Wall clock time and date at job start Mon Mar 30 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 C 1.52998 * 109.46902 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47088 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46980 * 180.02562 * 6 5 4 8 8 C 1.39782 * 120.00087 * 180.02562 * 7 6 5 9 9 C 1.38956 * 120.00487 * 359.72338 * 8 7 6 10 10 C 1.38013 * 119.99008 * 179.72309 * 9 8 7 11 11 C 1.38899 * 120.00511 * 0.55423 * 10 9 8 12 12 O 1.35798 * 119.98862 * 179.69977 * 11 10 9 13 13 C 1.34818 * 116.99804 * 174.48089 * 12 11 10 14 14 H 1.07997 * 119.99862 * 5.05034 * 13 12 11 15 15 C 1.38618 * 119.99980 * 185.06170 * 13 12 11 16 16 N 1.31583 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99913 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47064 * 90.00834 * 17 15 13 19 19 H 1.48501 * 109.46801 * 210.00367 * 17 15 13 20 20 H 1.48492 * 109.47158 * 330.00530 * 17 15 13 21 21 C 1.38893 * 120.01764 * 359.72264 * 11 10 9 22 22 C 1.38018 * 120.00244 * 359.97438 * 21 11 10 23 23 H 1.08999 * 109.47095 * 300.00186 * 1 2 3 24 24 H 1.09001 * 109.46851 * 59.99629 * 1 2 3 25 25 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47095 * 239.99814 * 2 1 3 27 27 H 1.09006 * 109.46501 * 120.00052 * 2 1 3 28 28 H 1.08999 * 109.47250 * 59.99909 * 3 2 1 29 29 H 1.08997 * 109.47028 * 299.99954 * 3 2 1 30 30 H 1.08999 * 109.46961 * 60.00077 * 4 3 2 31 31 H 1.08997 * 109.47523 * 299.99996 * 4 3 2 32 32 H 1.09008 * 109.46697 * 60.00372 * 5 4 3 33 33 H 1.08997 * 109.47217 * 300.00528 * 5 4 3 34 34 H 1.08999 * 109.46961 * 60.00422 * 6 5 4 35 35 H 1.08997 * 109.47523 * 300.00341 * 6 5 4 36 36 H 0.97006 * 120.00257 * 0.02562 * 7 6 5 37 37 H 1.07998 * 120.00178 * 0.02562 * 9 8 7 38 38 H 1.07995 * 119.99091 * 180.25449 * 10 9 8 39 39 H 0.96992 * 119.99873 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.00388 * 179.97438 * 21 11 10 41 41 H 1.07998 * 119.99940 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 0.0013 7 7 6.0985 4.2660 0.0013 8 6 7.4728 4.5214 0.0018 9 6 8.3758 3.4653 0.0082 10 6 9.7326 3.7178 0.0029 11 6 10.1955 5.0274 0.0029 12 8 11.5306 5.2755 0.0040 13 6 11.9140 6.5628 -0.1116 14 1 11.1730 7.3484 -0.1174 15 6 13.2593 6.8780 -0.2232 16 7 13.6335 8.1344 -0.3355 17 14 14.5409 5.5190 -0.2128 18 1 14.7880 5.0609 -1.6036 19 1 15.8053 6.0355 0.3702 20 1 14.0484 4.3803 0.6033 21 6 9.2931 6.0833 0.0024 22 6 7.9361 5.8314 0.0013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9337 0.9284 -0.8891 31 1 3.9331 0.9287 0.8908 32 1 3.7164 3.3992 0.8896 33 1 3.7171 3.3982 -0.8904 34 1 5.9741 2.3704 -0.8880 35 1 5.9727 2.3716 0.8919 36 1 5.4682 5.0034 0.0009 37 1 8.0159 2.4471 0.0123 38 1 10.4345 2.8970 0.0037 39 1 14.5749 8.3549 -0.4133 40 1 9.6532 7.1014 0.0028 41 1 7.2345 6.6524 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020360450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:03 Heat of formation + Delta-G solvation = -27.911746 kcal Electronic energy + Delta-G solvation = -18469.940519 eV Core-core repulsion = 15542.482547 eV Total energy + Delta-G solvation = -2927.457972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15446 -37.58781 -36.59153 -34.74275 -32.48561 -32.01681 -30.26612 -28.78187 -26.81672 -25.01360 -23.71868 -22.35099 -21.36210 -21.09642 -20.48441 -17.67747 -17.28299 -16.32721 -16.32222 -15.37428 -15.04625 -14.46754 -14.13280 -13.82440 -13.72055 -13.58966 -13.41330 -13.29328 -12.67798 -12.49149 -12.22960 -12.13007 -12.05923 -11.78733 -11.50114 -11.45535 -11.24013 -11.06089 -10.83494 -10.76111 -10.73506 -10.57078 -10.07606 -9.26891 -9.18400 -8.52016 -8.22128 -6.47428 -6.28450 -3.92777 2.14495 2.50167 3.29696 3.33162 3.48677 3.76959 4.34532 4.44959 4.54924 4.62938 4.68833 4.82927 4.96424 5.05312 5.08590 5.17923 5.22759 5.37117 5.45741 5.46894 5.54534 5.60044 5.63679 5.67839 5.72753 5.76718 5.84985 5.92827 6.06955 6.07174 6.16551 6.20318 6.47621 6.81063 6.84633 7.03622 7.37319 7.51396 7.81971 7.95887 8.13014 8.24443 9.08238 9.74632 10.80155 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.063792 B = 0.002595 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.824414 B =10786.699812 C =11178.830112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.130 4.130 6 C 0.133 3.867 7 N -0.761 5.761 8 C 0.132 3.868 9 C -0.150 4.150 10 C -0.149 4.149 11 C 0.116 3.884 12 O -0.228 6.228 13 C -0.384 4.384 14 H 0.103 0.897 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.176 4.176 22 C -0.145 4.145 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.391 0.609 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.134 0.866 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.790 -13.175 0.614 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.167 4.167 6 C 0.008 3.992 7 N -0.396 5.396 8 C 0.034 3.966 9 C -0.172 4.172 10 C -0.169 4.169 11 C 0.065 3.935 12 O -0.135 6.135 13 C -0.460 4.460 14 H 0.120 0.880 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.195 4.195 22 C -0.167 4.167 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.224 0.776 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.394 -13.379 0.616 25.241 hybrid contribution 0.333 0.016 -0.040 0.336 sum -21.061 -13.363 0.576 24.949 Atomic orbital electron populations 1.21783 0.96003 1.01524 1.01776 1.21548 0.95769 0.97021 1.02054 1.21618 0.95332 0.96713 1.02078 1.21519 0.95345 0.96237 1.02428 1.21760 0.95033 0.97467 1.02486 1.21133 0.93043 0.84573 1.00480 1.44266 1.03278 1.05852 1.86250 1.17471 0.83308 0.93297 1.02566 1.20164 0.91908 0.96911 1.08220 1.20014 0.94610 0.94300 1.07987 1.18963 0.84092 0.92941 0.97518 1.83575 1.17897 1.29684 1.82338 1.20704 0.94055 0.80206 1.50998 0.87965 1.24428 0.96944 0.96811 0.96100 1.69663 1.17636 1.16493 1.48974 0.86180 0.79721 0.81964 0.78986 1.20094 1.21032 1.18474 1.21110 0.92189 1.00011 1.06206 1.20298 0.95237 0.93996 1.07190 0.92800 0.92792 0.92864 0.92032 0.92036 0.92031 0.92022 0.91731 0.91728 0.91579 0.91565 0.93122 0.93133 0.77587 0.87021 0.86566 0.91343 0.84881 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.13 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.12 -0.78 5.21 -26.73 -0.14 -0.91 16 4 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 5 C -0.13 -1.06 5.33 -26.73 -0.14 -1.20 16 6 C 0.13 1.44 4.91 -4.04 -0.02 1.42 16 7 N -0.76 -10.14 5.74 -58.58 -0.34 -10.48 16 8 C 0.13 2.27 6.66 -83.70 -0.56 1.71 16 9 C -0.15 -2.65 9.31 -39.40 -0.37 -3.02 16 10 C -0.15 -3.06 9.98 -39.42 -0.39 -3.45 16 11 C 0.12 2.76 6.65 -39.09 -0.26 2.50 16 12 O -0.23 -6.22 8.58 -0.06 0.00 -6.22 16 13 C -0.38 -11.11 9.94 30.87 0.31 -10.80 16 14 H 0.10 3.01 5.43 -52.49 -0.28 2.73 16 15 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 16 N -0.89 -26.33 13.96 55.48 0.77 -25.56 16 17 Si 0.91 22.34 28.62 -169.99 -4.86 17.47 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.18 -3.89 9.16 -39.42 -0.36 -4.25 16 22 C -0.15 -2.70 9.89 -39.40 -0.39 -3.09 16 23 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.57 7.96 -51.93 -0.41 0.16 16 35 H 0.05 0.57 7.94 -51.93 -0.41 0.15 16 36 H 0.39 4.56 8.49 -40.82 -0.35 4.21 16 37 H 0.11 1.68 6.73 -52.49 -0.35 1.33 16 38 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.28 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.13 3.09 5.63 -52.49 -0.30 2.79 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -30.35 337.97 -8.42 -38.77 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.74 Total: 2.81 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.35 Total: -21.89 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.44 Total: -36.04 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.00 Total: -6.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.35 -8.42 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020360450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.859 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds