Wall clock time and date at job start Mon Mar 30 2020 07:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 C 1.52998 * 109.46902 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47088 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46980 * 180.02562 * 6 5 4 8 8 C 1.39782 * 120.00087 * 180.02562 * 7 6 5 9 9 C 1.38956 * 120.00487 * 359.72338 * 8 7 6 10 10 C 1.38013 * 119.99008 * 179.72309 * 9 8 7 11 11 C 1.38899 * 120.00511 * 0.55423 * 10 9 8 12 12 O 1.35798 * 119.98862 * 179.69977 * 11 10 9 13 13 C 1.34818 * 116.99804 * 174.48089 * 12 11 10 14 14 H 1.07997 * 119.99862 * 5.05034 * 13 12 11 15 15 C 1.38618 * 119.99980 * 185.06170 * 13 12 11 16 16 N 1.31583 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99913 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47064 * 90.00834 * 17 15 13 19 19 H 1.48501 * 109.46801 * 210.00367 * 17 15 13 20 20 H 1.48492 * 109.47158 * 330.00530 * 17 15 13 21 21 C 1.38893 * 120.01764 * 359.72264 * 11 10 9 22 22 C 1.38018 * 120.00244 * 359.97438 * 21 11 10 23 23 H 1.08999 * 109.47095 * 300.00186 * 1 2 3 24 24 H 1.09001 * 109.46851 * 59.99629 * 1 2 3 25 25 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47095 * 239.99814 * 2 1 3 27 27 H 1.09006 * 109.46501 * 120.00052 * 2 1 3 28 28 H 1.08999 * 109.47250 * 59.99909 * 3 2 1 29 29 H 1.08997 * 109.47028 * 299.99954 * 3 2 1 30 30 H 1.08999 * 109.46961 * 60.00077 * 4 3 2 31 31 H 1.08997 * 109.47523 * 299.99996 * 4 3 2 32 32 H 1.09008 * 109.46697 * 60.00372 * 5 4 3 33 33 H 1.08997 * 109.47217 * 300.00528 * 5 4 3 34 34 H 1.08999 * 109.46961 * 60.00422 * 6 5 4 35 35 H 1.08997 * 109.47523 * 300.00341 * 6 5 4 36 36 H 0.97006 * 120.00257 * 0.02562 * 7 6 5 37 37 H 1.07998 * 120.00178 * 0.02562 * 9 8 7 38 38 H 1.07995 * 119.99091 * 180.25449 * 10 9 8 39 39 H 0.96992 * 119.99873 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.00388 * 179.97438 * 21 11 10 41 41 H 1.07998 * 119.99940 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 0.0013 7 7 6.0985 4.2660 0.0013 8 6 7.4728 4.5214 0.0018 9 6 8.3758 3.4653 0.0082 10 6 9.7326 3.7178 0.0029 11 6 10.1955 5.0274 0.0029 12 8 11.5306 5.2755 0.0040 13 6 11.9140 6.5628 -0.1116 14 1 11.1730 7.3484 -0.1174 15 6 13.2593 6.8780 -0.2232 16 7 13.6335 8.1344 -0.3355 17 14 14.5409 5.5190 -0.2128 18 1 14.7880 5.0609 -1.6036 19 1 15.8053 6.0355 0.3702 20 1 14.0484 4.3803 0.6033 21 6 9.2931 6.0833 0.0024 22 6 7.9361 5.8314 0.0013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9337 0.9284 -0.8891 31 1 3.9331 0.9287 0.8908 32 1 3.7164 3.3992 0.8896 33 1 3.7171 3.3982 -0.8904 34 1 5.9741 2.3704 -0.8880 35 1 5.9727 2.3716 0.8919 36 1 5.4682 5.0034 0.0009 37 1 8.0159 2.4471 0.0123 38 1 10.4345 2.8970 0.0037 39 1 14.5749 8.3549 -0.4133 40 1 9.6532 7.1014 0.0028 41 1 7.2345 6.6524 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020360450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:02 Heat of formation + Delta-G solvation = -44.834552 kcal Electronic energy + Delta-G solvation = -18470.674347 eV Core-core repulsion = 15542.482547 eV Total energy + Delta-G solvation = -2928.191800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81258 -39.00386 -37.48487 -35.81770 -34.34303 -33.13564 -31.82786 -29.86452 -28.13136 -26.73207 -24.77530 -23.63907 -22.23997 -21.94541 -21.72780 -19.62798 -19.07225 -17.74116 -16.90682 -16.83796 -16.04408 -15.75246 -15.52724 -15.46320 -15.27811 -14.61315 -14.37522 -14.23691 -14.12192 -13.96841 -13.82652 -13.26719 -13.17968 -12.91430 -12.76280 -12.46722 -12.35001 -12.22915 -11.92088 -11.76800 -11.65044 -11.38351 -11.32398 -11.20022 -10.96085 -10.26415 -9.80245 -8.42809 -7.97908 -6.10620 0.55899 0.88254 1.33682 1.38538 1.55317 2.33396 2.65256 2.84993 3.17148 3.30329 3.83414 4.02516 4.11210 4.13034 4.16443 4.25879 4.37500 4.51068 4.56584 4.60552 4.65602 4.77762 4.82418 4.91751 4.95452 4.97789 5.09180 5.12593 5.23340 5.23783 5.26159 5.29009 5.40006 5.49066 5.50880 5.55160 5.62667 5.84300 5.86250 6.14974 6.61012 6.92816 7.02531 7.73040 8.69503 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.063792 B = 0.002595 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.824414 B =10786.699812 C =11178.830112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.120 4.120 6 C 0.126 3.874 7 N -0.749 5.749 8 C 0.158 3.842 9 C -0.149 4.149 10 C -0.142 4.142 11 C 0.065 3.935 12 O -0.254 6.254 13 C -0.391 4.391 14 H 0.078 0.922 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.264 1.264 21 C -0.187 4.187 22 C -0.153 4.153 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.402 0.598 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.282 0.718 40 H 0.108 0.892 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.963 -15.649 0.645 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.158 4.158 6 C 0.002 3.998 7 N -0.383 5.383 8 C 0.056 3.944 9 C -0.171 4.171 10 C -0.162 4.162 11 C 0.016 3.984 12 O -0.163 6.163 13 C -0.468 4.468 14 H 0.095 0.905 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.795 3.205 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.207 4.207 22 C -0.175 4.175 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.656 -15.874 0.647 28.496 hybrid contribution 0.604 0.682 -0.043 0.912 sum -23.052 -15.192 0.604 27.615 Atomic orbital electron populations 1.21790 0.95728 1.01814 1.01836 1.21552 0.96050 0.96798 1.02069 1.21589 0.94872 0.96939 1.02111 1.21491 0.95695 0.95443 1.02590 1.21684 0.92953 0.98308 1.02881 1.21363 0.94851 0.82782 1.00758 1.44434 1.01745 1.07777 1.84342 1.17615 0.85230 0.92518 0.99002 1.20508 0.90702 0.98790 1.07096 1.20300 0.96216 0.93147 1.06505 1.19468 0.83224 0.94836 1.00871 1.83503 1.19951 1.28082 1.84805 1.20674 0.94094 0.80928 1.51098 0.90494 1.25268 0.98891 0.99227 0.96006 1.69751 1.18388 1.18242 1.50887 0.85187 0.77331 0.78732 0.79249 1.19217 1.19401 1.18797 1.21079 0.93883 0.98661 1.07076 1.20483 0.94044 0.95837 1.07143 0.92741 0.92743 0.92514 0.92034 0.92022 0.91995 0.92005 0.91606 0.91575 0.91189 0.91207 0.92779 0.92742 0.76275 0.83498 0.85298 0.90863 0.87403 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.13 -1.27 5.93 30.60 0.18 -1.08 16 3 C -0.12 -1.21 5.21 30.59 0.16 -1.05 16 4 C -0.11 -1.26 5.21 30.59 0.16 -1.10 16 5 C -0.12 -1.52 5.33 30.59 0.16 -1.36 16 6 C 0.13 2.21 4.91 86.38 0.42 2.64 16 7 N -0.75 -16.99 5.74 -339.26 -1.95 -18.93 16 8 C 0.16 4.95 6.66 38.22 0.25 5.21 16 9 C -0.15 -4.81 9.31 22.39 0.21 -4.60 16 10 C -0.14 -5.65 9.98 22.37 0.22 -5.42 16 11 C 0.06 3.14 6.65 22.59 0.15 3.29 16 12 O -0.25 -14.37 8.58 -23.15 -0.20 -14.57 16 13 C -0.39 -23.86 9.94 67.91 0.68 -23.18 16 14 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 15 C 0.00 0.18 5.49 84.82 0.47 0.64 16 16 N -0.93 -57.24 13.96 21.61 0.30 -56.94 16 17 Si 0.97 47.03 28.62 68.60 1.96 49.00 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 21 C -0.19 -8.56 9.16 22.37 0.20 -8.35 16 22 C -0.15 -5.50 9.89 22.39 0.22 -5.28 16 23 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.97 7.96 -2.39 -0.02 0.95 16 35 H 0.05 0.97 7.94 -2.39 -0.02 0.95 16 36 H 0.40 7.74 8.49 -92.70 -0.79 6.95 16 37 H 0.15 3.73 6.73 -2.91 -0.02 3.71 16 38 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.11 5.40 5.63 -2.91 -0.02 5.38 16 41 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -67.87 337.97 4.54 -63.33 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.21 Total: 18.47 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 4.21 Total: -40.36 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.64 Total: -75.88 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.20 Total: -14.57 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.96 Total: 49.00 kcal Total: -67.87 4.54 -63.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020360450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds