Wall clock time and date at job start Mon Mar 30 2020 07:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.52993 * 109.47497 * 120.00005 * 2 1 3 5 5 C 1.52992 * 109.47409 * 174.99811 * 4 2 1 6 6 N 1.46902 * 109.47440 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00265 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47325 * 180.02562 * 7 6 5 9 9 C 1.38118 * 120.03410 * 260.00127 * 8 7 6 10 10 C 1.38285 * 120.06721 * 179.97438 * 9 8 7 11 11 C 1.38323 * 120.13964 * 359.95502 * 10 9 8 12 12 C 1.38076 * 120.06761 * 0.02562 * 11 10 9 13 13 C 1.38854 * 120.03536 * 79.95475 * 8 7 6 14 14 O 1.35751 * 120.07020 * 0.04730 * 13 8 7 15 15 C 1.34834 * 117.00114 * 174.38801 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.06857 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.07486 * 15 14 13 18 18 N 1.31555 * 120.00329 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47661 * 89.99332 * 19 17 15 21 21 H 1.48494 * 109.47328 * 209.99957 * 19 17 15 22 22 H 1.48503 * 109.46719 * 329.99508 * 19 17 15 23 23 H 1.09000 * 109.47109 * 299.99910 * 1 2 3 24 24 H 1.09006 * 109.47284 * 59.99892 * 1 2 3 25 25 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47031 * 240.00641 * 2 1 3 27 27 H 1.09000 * 109.47113 * 60.00093 * 3 2 1 28 28 H 1.09000 * 109.47195 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47187 * 300.00167 * 3 2 1 30 30 H 1.09009 * 109.46856 * 55.00156 * 4 2 1 31 31 H 1.08995 * 109.47367 * 295.00274 * 4 2 1 32 32 H 1.08996 * 109.47023 * 60.00146 * 5 4 2 33 33 H 1.09002 * 109.47742 * 300.00107 * 5 4 2 34 34 H 1.00901 * 110.99888 * 56.04980 * 6 5 4 35 35 H 1.08996 * 109.47209 * 59.99865 * 7 6 5 36 36 H 1.09000 * 109.47353 * 299.99890 * 7 6 5 37 37 H 1.08004 * 119.96844 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.92572 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.96339 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.02961 * 179.72101 * 12 11 10 41 41 H 0.96997 * 120.00240 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1878 6 7 4.0545 -1.5240 2.3870 7 6 5.5181 -1.6475 2.3629 8 6 5.9824 -2.3624 3.6056 9 6 6.4885 -1.6416 4.6695 10 6 6.9143 -2.2969 5.8103 11 6 6.8341 -3.6754 5.8903 12 6 6.3288 -4.4017 4.8303 13 6 5.9011 -3.7464 3.6826 14 8 5.4041 -4.4578 2.6386 15 6 5.4605 -5.8017 2.7314 16 1 5.8113 -6.2658 3.6413 17 6 5.0683 -6.5878 1.6587 18 7 4.6407 -6.0223 0.5505 19 14 5.1457 -8.4497 1.7875 20 1 3.8564 -8.9635 2.3156 21 1 5.3961 -9.0290 0.4433 22 1 6.2464 -8.8369 2.7062 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6054 -1.7198 1.2950 31 1 1.7517 -0.1584 2.1369 32 1 3.9994 0.1675 1.1419 33 1 3.8532 -1.3939 0.3001 34 1 3.6167 -2.4277 2.4865 35 1 5.9659 -0.6545 2.3258 36 1 5.8204 -2.2155 1.4831 37 1 6.5518 -0.5650 4.6104 38 1 7.3101 -1.7310 6.6407 39 1 7.1671 -4.1843 6.7829 40 1 6.2706 -5.4783 4.8916 41 1 4.3660 -6.5722 -0.1999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034991030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:02 Heat of formation + Delta-G solvation = -27.768613 kcal Electronic energy + Delta-G solvation = -19638.352450 eV Core-core repulsion = 16710.900684 eV Total energy + Delta-G solvation = -2927.451766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.16431 -37.17802 -36.36226 -34.70234 -32.29166 -30.99728 -28.98154 -27.92914 -27.13024 -25.39213 -24.24163 -21.88510 -21.53647 -20.45301 -19.73076 -17.93274 -16.80933 -15.80085 -14.96579 -14.75861 -14.66421 -14.42648 -14.13991 -13.86800 -13.69636 -13.46317 -13.05349 -12.74865 -12.51572 -12.18776 -12.08854 -11.70942 -11.64867 -11.43452 -11.29413 -11.12449 -10.88661 -10.69040 -10.63393 -10.50483 -10.40699 -10.30118 -10.26546 -9.31131 -8.84992 -8.11394 -7.76958 -7.18505 -6.46408 -4.04867 2.18652 2.41745 3.11785 3.13003 3.17245 3.95746 4.48307 4.79073 4.99625 5.02369 5.08474 5.21988 5.31611 5.54034 5.61492 5.64080 5.65565 5.72253 5.79496 5.86809 5.88292 5.93028 6.01679 6.02160 6.15195 6.19603 6.23860 6.28143 6.35421 6.47743 6.51992 6.58872 6.74499 6.94363 7.12243 7.29282 7.40073 7.44388 7.62104 7.86881 7.95501 8.04333 9.00320 9.69294 10.71404 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.005934 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.803044 B = 4717.129859 C = 6581.118904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.111 4.111 5 C 0.058 3.942 6 N -0.685 5.685 7 C 0.119 3.881 8 C -0.156 4.156 9 C -0.060 4.060 10 C -0.214 4.214 11 C -0.076 4.076 12 C -0.234 4.234 13 C 0.158 3.842 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.090 0.910 17 C 0.041 3.959 18 N -0.863 5.863 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.350 0.650 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 9.112 1.277 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.071 4.071 6 N -0.317 5.317 7 C -0.010 4.010 8 C -0.158 4.158 9 C -0.079 4.079 10 C -0.233 4.233 11 C -0.094 4.094 12 C -0.253 4.253 13 C 0.104 3.896 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.163 4.163 18 N -0.499 5.499 19 Si 0.763 3.237 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.193 1.193 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.169 0.831 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.932 9.668 1.195 10.173 hybrid contribution 0.223 -1.775 -0.484 1.853 sum -2.708 7.893 0.712 8.375 Atomic orbital electron populations 1.21826 0.95478 1.01698 1.01295 1.21088 0.95481 0.96268 0.98746 1.21881 1.01265 0.96043 1.01219 1.21593 0.95247 1.00665 0.97411 1.21964 0.94808 0.98566 0.91792 1.60678 1.05796 1.26920 1.38291 1.20468 0.87812 0.97855 0.94817 1.18861 1.08641 0.90557 0.97738 1.20537 0.96902 0.98217 0.92280 1.20589 1.09460 0.94371 0.98875 1.20753 0.97527 0.93973 0.97188 1.21150 1.08695 1.00573 0.94916 1.19214 0.91340 0.90968 0.88090 1.83943 1.68477 1.19719 1.35951 1.21297 1.45823 0.78086 1.01520 0.89216 1.25229 0.96471 1.00276 0.94352 1.70020 1.40310 1.36028 1.03509 0.85746 0.78954 0.80907 0.78047 1.19926 1.20340 1.19262 0.92817 0.93075 0.92683 0.91328 0.92783 0.92439 0.93244 0.91955 0.91450 0.91652 0.95367 0.83133 0.91871 0.94118 0.87109 0.87730 0.87643 0.85658 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 37.16 0.34 -1.21 16 2 C -0.10 -1.16 2.92 -90.63 -0.26 -1.42 16 3 C -0.15 -1.57 8.95 37.16 0.33 -1.23 16 4 C -0.11 -1.58 4.94 -26.74 -0.13 -1.71 16 5 C 0.06 0.94 5.44 -3.83 -0.02 0.91 16 6 N -0.69 -12.94 6.49 -115.07 -0.75 -13.68 16 7 C 0.12 2.34 5.48 -4.98 -0.03 2.31 16 8 C -0.16 -3.30 5.41 -104.44 -0.56 -3.86 16 9 C -0.06 -1.12 9.66 -39.61 -0.38 -1.51 16 10 C -0.21 -3.82 10.04 -39.53 -0.40 -4.22 16 11 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 12 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 13 C 0.16 3.76 6.62 -39.11 -0.26 3.50 16 14 O -0.18 -4.85 8.95 0.03 0.00 -4.85 16 15 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 19 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.35 7.46 8.68 -39.29 -0.34 7.11 16 35 H 0.06 1.09 8.00 -51.93 -0.42 0.68 16 36 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 37 H 0.11 1.77 8.04 -52.48 -0.42 1.35 16 38 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -28.56 337.08 -8.49 -37.05 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.62 Total: 10.12 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -1.94 Total: -25.18 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.01 Total: -37.58 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.85 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.56 -8.49 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.279 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds