Wall clock time and date at job start Mon Mar 30 2020 07:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.52993 * 109.47497 * 120.00005 * 2 1 3 5 5 C 1.52992 * 109.47409 * 174.99811 * 4 2 1 6 6 N 1.46902 * 109.47440 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00265 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47325 * 180.02562 * 7 6 5 9 9 C 1.38118 * 120.03410 * 260.00127 * 8 7 6 10 10 C 1.38285 * 120.06721 * 179.97438 * 9 8 7 11 11 C 1.38323 * 120.13964 * 359.95502 * 10 9 8 12 12 C 1.38076 * 120.06761 * 0.02562 * 11 10 9 13 13 C 1.38854 * 120.03536 * 79.95475 * 8 7 6 14 14 O 1.35751 * 120.07020 * 0.04730 * 13 8 7 15 15 C 1.34834 * 117.00114 * 174.38801 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.06857 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.07486 * 15 14 13 18 18 N 1.31555 * 120.00329 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47661 * 89.99332 * 19 17 15 21 21 H 1.48494 * 109.47328 * 209.99957 * 19 17 15 22 22 H 1.48503 * 109.46719 * 329.99508 * 19 17 15 23 23 H 1.09000 * 109.47109 * 299.99910 * 1 2 3 24 24 H 1.09006 * 109.47284 * 59.99892 * 1 2 3 25 25 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47031 * 240.00641 * 2 1 3 27 27 H 1.09000 * 109.47113 * 60.00093 * 3 2 1 28 28 H 1.09000 * 109.47195 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47187 * 300.00167 * 3 2 1 30 30 H 1.09009 * 109.46856 * 55.00156 * 4 2 1 31 31 H 1.08995 * 109.47367 * 295.00274 * 4 2 1 32 32 H 1.08996 * 109.47023 * 60.00146 * 5 4 2 33 33 H 1.09002 * 109.47742 * 300.00107 * 5 4 2 34 34 H 1.00901 * 110.99888 * 56.04980 * 6 5 4 35 35 H 1.08996 * 109.47209 * 59.99865 * 7 6 5 36 36 H 1.09000 * 109.47353 * 299.99890 * 7 6 5 37 37 H 1.08004 * 119.96844 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.92572 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.96339 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.02961 * 179.72101 * 12 11 10 41 41 H 0.96997 * 120.00240 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1878 6 7 4.0545 -1.5240 2.3870 7 6 5.5181 -1.6475 2.3629 8 6 5.9824 -2.3624 3.6056 9 6 6.4885 -1.6416 4.6695 10 6 6.9143 -2.2969 5.8103 11 6 6.8341 -3.6754 5.8903 12 6 6.3288 -4.4017 4.8303 13 6 5.9011 -3.7464 3.6826 14 8 5.4041 -4.4578 2.6386 15 6 5.4605 -5.8017 2.7314 16 1 5.8113 -6.2658 3.6413 17 6 5.0683 -6.5878 1.6587 18 7 4.6407 -6.0223 0.5505 19 14 5.1457 -8.4497 1.7875 20 1 3.8564 -8.9635 2.3156 21 1 5.3961 -9.0290 0.4433 22 1 6.2464 -8.8369 2.7062 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6054 -1.7198 1.2950 31 1 1.7517 -0.1584 2.1369 32 1 3.9994 0.1675 1.1419 33 1 3.8532 -1.3939 0.3001 34 1 3.6167 -2.4277 2.4865 35 1 5.9659 -0.6545 2.3258 36 1 5.8204 -2.2155 1.4831 37 1 6.5518 -0.5650 4.6104 38 1 7.3101 -1.7310 6.6407 39 1 7.1671 -4.1843 6.7829 40 1 6.2706 -5.4783 4.8916 41 1 4.3660 -6.5722 -0.1999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034991030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:02 Heat of formation + Delta-G solvation = -44.446504 kcal Electronic energy + Delta-G solvation = -19639.075658 eV Core-core repulsion = 16710.900684 eV Total energy + Delta-G solvation = -2928.174973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87064 -38.47293 -38.00701 -36.04099 -34.26676 -32.47853 -30.58927 -29.29443 -28.00117 -27.36074 -25.70968 -23.31705 -23.11711 -22.02386 -20.80327 -19.77853 -18.61920 -17.23233 -16.52019 -16.33164 -16.18343 -15.93477 -15.48699 -15.28947 -15.25750 -14.94946 -14.47431 -14.36521 -13.83461 -13.56697 -13.40639 -13.09296 -12.98905 -12.91750 -12.59876 -12.50014 -12.33852 -12.26311 -12.15847 -12.01460 -11.56197 -11.50434 -11.41720 -11.08948 -10.79797 -9.68881 -9.35992 -8.90967 -8.46096 -6.12490 0.59229 0.79683 1.33826 1.42398 1.49967 2.16830 2.83865 3.11329 3.44877 3.55252 3.91684 3.99863 4.08735 4.09834 4.15001 4.33906 4.39442 4.50455 4.58692 4.62612 4.65894 4.72240 4.79227 4.84734 4.87133 4.98628 5.04769 5.13260 5.14672 5.15904 5.18951 5.31313 5.35420 5.48055 5.52029 5.69904 5.76240 5.81967 6.01900 6.11199 6.30023 6.32598 6.99780 7.80371 8.75950 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.005934 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.803044 B = 4717.129859 C = 6581.118904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.104 4.104 5 C 0.060 3.940 6 N -0.681 5.681 7 C 0.124 3.876 8 C -0.167 4.167 9 C -0.060 4.060 10 C -0.193 4.193 11 C -0.076 4.076 12 C -0.251 4.251 13 C 0.119 3.881 14 O -0.220 6.220 15 C -0.411 4.411 16 H 0.097 0.903 17 C -0.018 4.018 18 N -0.916 5.916 19 Si 1.012 2.988 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.256 1.256 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.005 0.995 34 H 0.331 0.669 35 H 0.093 0.907 36 H 0.002 0.998 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 10.749 3.345 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.142 4.142 5 C -0.069 4.069 6 N -0.310 5.310 7 C -0.004 4.004 8 C -0.169 4.169 9 C -0.078 4.078 10 C -0.211 4.211 11 C -0.094 4.094 12 C -0.270 4.270 13 C 0.068 3.932 14 O -0.126 6.126 15 C -0.488 4.488 16 H 0.114 0.886 17 C -0.216 4.216 18 N -0.554 5.554 19 Si 0.832 3.168 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.179 1.179 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.023 0.977 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.020 0.980 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.352 11.348 3.305 12.051 hybrid contribution 0.147 -2.057 -0.932 2.263 sum -2.205 9.291 2.374 9.840 Atomic orbital electron populations 1.21805 0.94224 1.01555 1.02465 1.21078 0.96549 0.96965 0.96890 1.21850 1.00975 0.94862 1.02348 1.21544 0.93597 1.00007 0.99039 1.22064 0.96343 0.98694 0.89792 1.60795 1.05222 1.25581 1.39414 1.20448 0.88431 0.98519 0.93017 1.19226 1.08700 0.89840 0.99091 1.20989 0.95409 0.99962 0.91467 1.21157 1.06439 0.94110 0.99401 1.21168 0.96271 0.94772 0.97204 1.21297 1.09589 1.00523 0.95611 1.19772 0.92875 0.92236 0.88317 1.83925 1.71031 1.19753 1.37932 1.21742 1.46049 0.78851 1.02111 0.88612 1.26423 0.95913 1.05503 0.93736 1.70168 1.42658 1.37977 1.04584 0.84666 0.79503 0.74223 0.78360 1.18960 1.19788 1.17949 0.92020 0.91504 0.93544 0.92406 0.92037 0.92854 0.91742 0.94028 0.90776 0.89496 0.97693 0.85304 0.88854 0.97982 0.83600 0.83308 0.84110 0.86710 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.19 71.98 0.66 -2.25 16 2 C -0.10 -2.26 2.92 -10.80 -0.03 -2.29 16 3 C -0.14 -2.80 8.95 71.98 0.64 -2.16 16 4 C -0.10 -2.99 4.94 30.59 0.15 -2.84 16 5 C 0.06 1.98 5.44 86.30 0.47 2.45 16 6 N -0.68 -26.46 6.49 -517.96 -3.36 -29.82 16 7 C 0.12 5.00 5.48 85.56 0.47 5.47 16 8 C -0.17 -7.03 5.41 -19.75 -0.11 -7.14 16 9 C -0.06 -2.03 9.66 22.25 0.22 -1.81 16 10 C -0.19 -6.00 10.04 22.30 0.22 -5.78 16 11 C -0.08 -2.64 10.04 22.25 0.22 -2.42 16 12 C -0.25 -11.07 9.17 22.39 0.21 -10.87 16 13 C 0.12 5.86 6.62 22.58 0.15 6.01 16 14 O -0.22 -12.84 8.95 -22.80 -0.20 -13.05 16 15 C -0.41 -23.74 9.49 67.92 0.64 -23.10 16 16 H 0.10 5.16 5.20 -2.91 -0.02 5.15 16 17 C -0.02 -1.01 5.49 84.83 0.47 -0.55 16 18 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 19 Si 1.01 43.08 29.55 68.60 2.03 45.11 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.08 6.57 -2.39 -0.02 1.06 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 2.49 6.57 -2.39 -0.02 2.47 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.33 15.05 8.68 -89.69 -0.78 14.28 16 35 H 0.09 3.11 8.00 -2.39 -0.02 3.09 16 36 H 0.00 0.09 7.86 -2.39 -0.02 0.07 16 37 H 0.15 3.93 8.04 -2.91 -0.02 3.90 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -66.44 337.08 3.37 -63.08 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.23 Total: 37.12 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 4.38 Total: -47.27 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.07 Total: -84.99 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.20 Total: -13.05 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.44 3.37 -63.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.629 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds