Wall clock time and date at job start Mon Mar 30 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47050 * 2 1 4 4 C 1.52993 * 109.47455 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47409 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47440 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00265 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47325 * 180.02562 * 7 6 5 9 9 C 1.38118 * 120.03410 * 260.00127 * 8 7 6 10 10 C 1.38285 * 120.06721 * 179.97438 * 9 8 7 11 11 C 1.38323 * 120.13964 * 359.95502 * 10 9 8 12 12 C 1.38076 * 120.06761 * 0.02562 * 11 10 9 13 13 C 1.38854 * 120.03536 * 79.95475 * 8 7 6 14 14 O 1.35751 * 120.07020 * 0.04730 * 13 8 7 15 15 C 1.34834 * 117.00114 * 174.38801 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.06857 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.07486 * 15 14 13 18 18 N 1.31555 * 120.00329 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47008 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47461 * 119.99450 * 19 17 15 22 22 H 1.48499 * 109.46853 * 239.99794 * 19 17 15 23 23 H 1.08995 * 109.47458 * 60.00003 * 1 2 3 24 24 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46829 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.47223 * 239.99857 * 2 1 3 27 27 H 1.09004 * 109.47100 * 119.99512 * 2 1 3 28 28 H 1.09003 * 109.46975 * 59.99593 * 3 2 1 29 29 H 1.09004 * 109.46675 * 300.00260 * 3 2 1 30 30 H 1.09009 * 109.46856 * 60.00072 * 4 3 2 31 31 H 1.08995 * 109.47367 * 300.00189 * 4 3 2 32 32 H 1.08996 * 109.47023 * 60.00146 * 5 4 3 33 33 H 1.09002 * 109.47742 * 300.00107 * 5 4 3 34 34 H 1.00901 * 110.99888 * 56.04980 * 6 5 4 35 35 H 1.08996 * 109.47209 * 59.99865 * 7 6 5 36 36 H 1.09000 * 109.47353 * 299.99890 * 7 6 5 37 37 H 1.08004 * 119.96844 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.92572 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.96339 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.02961 * 179.72101 * 12 11 10 41 41 H 0.96997 * 120.00240 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5489 2.8852 0.0000 7 6 6.0753 4.2566 0.0000 8 6 7.5817 4.2165 -0.0006 9 6 8.2788 4.4054 1.1767 10 6 9.6612 4.3683 1.1770 11 6 10.3501 4.1409 -0.0008 12 6 9.6589 3.9509 -1.1809 13 6 8.2704 3.9886 -1.1846 14 8 7.5882 3.8025 -2.3434 15 6 8.3168 3.7024 -3.4735 16 1 9.3954 3.6885 -3.4210 17 6 7.6812 3.6174 -4.7028 18 7 6.3673 3.6339 -4.7666 19 14 8.6906 3.4779 -6.2684 20 1 10.1359 3.4804 -5.9274 21 1 8.3486 2.2130 -6.9669 22 1 8.3898 4.6302 -7.1555 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9287 -0.8892 31 1 3.9330 0.9290 0.8908 32 1 3.7162 3.3994 0.8895 33 1 3.7169 3.3985 -0.8904 34 1 5.9105 2.3588 -0.7812 35 1 5.7258 4.7799 0.8899 36 1 5.7258 4.7800 -0.8900 37 1 7.7437 4.5824 2.0980 38 1 10.2039 4.5167 2.0988 39 1 11.4297 4.1121 0.0028 40 1 10.1976 3.7780 -2.1009 41 1 5.9227 3.5741 -5.6266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035042967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:08 Heat of formation + Delta-G solvation = -31.313761 kcal Electronic energy + Delta-G solvation = -19381.646317 eV Core-core repulsion = 16454.040822 eV Total energy + Delta-G solvation = -2927.605495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.16361 -36.76360 -36.29457 -34.73865 -32.31245 -31.59335 -29.60908 -28.76491 -25.84130 -25.32878 -23.49803 -21.59485 -21.23193 -20.92894 -20.28127 -17.93581 -16.80397 -15.92766 -15.28449 -14.75289 -14.56463 -14.44558 -14.29058 -13.75083 -13.68106 -13.38393 -13.18499 -12.94937 -12.68966 -12.29667 -11.85779 -11.69833 -11.63682 -11.33206 -11.27675 -10.94823 -10.87051 -10.85599 -10.64952 -10.60239 -10.41147 -10.32714 -10.27439 -9.31042 -8.85662 -8.11766 -7.77600 -7.18740 -6.46821 -4.05210 2.18430 2.41421 3.11109 3.12981 3.17949 3.95461 4.47344 4.75448 4.96567 5.04894 5.11033 5.20402 5.29710 5.36309 5.51569 5.61975 5.64535 5.71409 5.77090 5.81632 5.90022 5.94352 6.01541 6.06357 6.10421 6.15938 6.17725 6.25748 6.34669 6.46716 6.51458 6.56150 6.74304 6.94137 7.12353 7.29046 7.39979 7.44149 7.61355 7.86632 7.95130 8.03867 9.00083 9.69096 10.71131 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.005463 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.904933 B = 5124.449120 C = 7096.588699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.117 4.117 5 C 0.059 3.941 6 N -0.686 5.686 7 C 0.119 3.881 8 C -0.156 4.156 9 C -0.061 4.061 10 C -0.214 4.214 11 C -0.076 4.076 12 C -0.234 4.234 13 C 0.158 3.842 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.939 3.061 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.350 0.650 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 -2.721 8.029 9.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.155 4.155 5 C -0.070 4.070 6 N -0.317 5.317 7 C -0.010 4.010 8 C -0.158 4.158 9 C -0.079 4.079 10 C -0.233 4.233 11 C -0.094 4.094 12 C -0.253 4.253 13 C 0.104 3.896 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.163 4.163 18 N -0.499 5.499 19 Si 0.764 3.236 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.963 -2.818 8.465 10.209 hybrid contribution 0.507 0.221 -1.761 1.846 sum -4.456 -2.597 6.703 8.458 Atomic orbital electron populations 1.21780 0.96231 1.01265 1.01679 1.21530 0.95466 0.97229 1.02013 1.21567 0.95663 0.96479 1.01852 1.21551 0.94487 0.96924 1.02501 1.21905 0.88803 0.96414 0.99921 1.60676 1.06160 1.14229 1.50637 1.20473 0.90828 0.89740 0.99942 1.18858 0.94544 1.10847 0.91530 1.20539 0.93725 0.97823 0.95857 1.20593 0.94129 1.11130 0.97452 1.20753 0.98429 0.97651 0.92593 1.21155 0.94104 1.11184 0.98901 1.19214 0.90521 0.92356 0.87512 1.83943 1.34514 1.77863 1.11810 1.21351 0.91239 1.52189 0.81906 0.89150 1.25233 0.96081 0.96673 0.98360 1.70029 1.07443 1.46463 1.25953 0.85679 0.79277 0.78221 0.80463 1.19145 1.20193 1.20226 0.92799 0.93050 0.92930 0.92009 0.92148 0.92236 0.92075 0.91962 0.91505 0.91925 0.95284 0.83095 0.91844 0.94098 0.87098 0.87719 0.87637 0.85644 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.12 -1.40 5.21 -26.73 -0.14 -1.54 16 4 C -0.12 -1.65 5.47 -26.74 -0.15 -1.79 16 5 C 0.06 0.95 5.68 -3.83 -0.02 0.93 16 6 N -0.69 -12.96 6.49 -115.07 -0.75 -13.71 16 7 C 0.12 2.34 5.48 -4.98 -0.03 2.31 16 8 C -0.16 -3.29 5.41 -104.44 -0.56 -3.86 16 9 C -0.06 -1.13 9.66 -39.61 -0.38 -1.51 16 10 C -0.21 -3.82 10.04 -39.53 -0.40 -4.22 16 11 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 12 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 13 C 0.16 3.76 6.62 -39.11 -0.26 3.51 16 14 O -0.18 -4.86 8.95 0.03 0.00 -4.86 16 15 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 19 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.35 7.46 8.68 -39.29 -0.34 7.12 16 35 H 0.06 1.10 8.00 -51.93 -0.42 0.68 16 36 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 37 H 0.11 1.77 8.04 -52.48 -0.42 1.35 16 38 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -28.61 341.01 -8.95 -37.56 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.79 Total: 9.86 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.29 Total: -25.44 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.01 Total: -37.63 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: 0.00 Total: -4.86 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.61 -8.95 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035042967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.244 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds