Wall clock time and date at job start Mon Mar 30 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47050 * 2 1 4 4 C 1.52993 * 109.47455 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47409 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47440 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00265 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47325 * 180.02562 * 7 6 5 9 9 C 1.38118 * 120.03410 * 260.00127 * 8 7 6 10 10 C 1.38285 * 120.06721 * 179.97438 * 9 8 7 11 11 C 1.38323 * 120.13964 * 359.95502 * 10 9 8 12 12 C 1.38076 * 120.06761 * 0.02562 * 11 10 9 13 13 C 1.38854 * 120.03536 * 79.95475 * 8 7 6 14 14 O 1.35751 * 120.07020 * 0.04730 * 13 8 7 15 15 C 1.34834 * 117.00114 * 174.38801 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.06857 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.07486 * 15 14 13 18 18 N 1.31555 * 120.00329 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47008 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47461 * 119.99450 * 19 17 15 22 22 H 1.48499 * 109.46853 * 239.99794 * 19 17 15 23 23 H 1.08995 * 109.47458 * 60.00003 * 1 2 3 24 24 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46829 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.47223 * 239.99857 * 2 1 3 27 27 H 1.09004 * 109.47100 * 119.99512 * 2 1 3 28 28 H 1.09003 * 109.46975 * 59.99593 * 3 2 1 29 29 H 1.09004 * 109.46675 * 300.00260 * 3 2 1 30 30 H 1.09009 * 109.46856 * 60.00072 * 4 3 2 31 31 H 1.08995 * 109.47367 * 300.00189 * 4 3 2 32 32 H 1.08996 * 109.47023 * 60.00146 * 5 4 3 33 33 H 1.09002 * 109.47742 * 300.00107 * 5 4 3 34 34 H 1.00901 * 110.99888 * 56.04980 * 6 5 4 35 35 H 1.08996 * 109.47209 * 59.99865 * 7 6 5 36 36 H 1.09000 * 109.47353 * 299.99890 * 7 6 5 37 37 H 1.08004 * 119.96844 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.92572 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.96339 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.02961 * 179.72101 * 12 11 10 41 41 H 0.96997 * 120.00240 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5489 2.8852 0.0000 7 6 6.0753 4.2566 0.0000 8 6 7.5817 4.2165 -0.0006 9 6 8.2788 4.4054 1.1767 10 6 9.6612 4.3683 1.1770 11 6 10.3501 4.1409 -0.0008 12 6 9.6589 3.9509 -1.1809 13 6 8.2704 3.9886 -1.1846 14 8 7.5882 3.8025 -2.3434 15 6 8.3168 3.7024 -3.4735 16 1 9.3954 3.6885 -3.4210 17 6 7.6812 3.6174 -4.7028 18 7 6.3673 3.6339 -4.7666 19 14 8.6906 3.4779 -6.2684 20 1 10.1359 3.4804 -5.9274 21 1 8.3486 2.2130 -6.9669 22 1 8.3898 4.6302 -7.1555 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9287 -0.8892 31 1 3.9330 0.9290 0.8908 32 1 3.7162 3.3994 0.8895 33 1 3.7169 3.3985 -0.8904 34 1 5.9105 2.3588 -0.7812 35 1 5.7258 4.7799 0.8899 36 1 5.7258 4.7800 -0.8900 37 1 7.7437 4.5824 2.0980 38 1 10.2039 4.5167 2.0988 39 1 11.4297 4.1121 0.0028 40 1 10.1976 3.7780 -2.1009 41 1 5.9227 3.5741 -5.6266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035042967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:08 Heat of formation + Delta-G solvation = -47.751344 kcal Electronic energy + Delta-G solvation = -19382.359104 eV Core-core repulsion = 16454.040822 eV Total energy + Delta-G solvation = -2928.318282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87060 -38.28925 -37.76589 -35.94637 -34.27449 -32.93990 -30.96872 -30.34555 -27.45795 -26.95781 -24.83565 -23.28099 -22.43078 -22.11344 -21.70188 -19.78130 -18.61980 -17.25564 -16.60757 -16.46606 -16.15576 -15.99412 -15.68095 -15.28442 -15.17669 -14.82515 -14.50815 -14.31878 -14.02692 -13.64062 -13.52535 -13.13472 -12.98843 -12.86599 -12.53600 -12.43933 -12.26402 -12.18282 -12.08027 -11.91044 -11.80389 -11.50606 -11.39293 -11.08707 -10.80775 -9.69106 -9.36249 -8.91111 -8.46545 -6.12847 0.59120 0.79419 1.33838 1.41418 1.50798 2.16535 2.83641 3.11032 3.44603 3.54890 3.91422 4.02357 4.08462 4.12519 4.22269 4.32135 4.35275 4.44940 4.53828 4.60515 4.65430 4.72297 4.73275 4.84198 4.91258 4.92555 5.03302 5.13121 5.14580 5.18857 5.20558 5.32287 5.35391 5.44084 5.49766 5.69733 5.76146 5.81860 6.01807 6.10948 6.29881 6.32189 6.99568 7.80184 8.75835 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.005463 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.904933 B = 5124.449120 C = 7096.588699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.109 4.109 5 C 0.059 3.941 6 N -0.681 5.681 7 C 0.124 3.876 8 C -0.167 4.167 9 C -0.060 4.060 10 C -0.193 4.193 11 C -0.076 4.076 12 C -0.251 4.251 13 C 0.119 3.881 14 O -0.220 6.220 15 C -0.410 4.410 16 H 0.097 0.903 17 C -0.018 4.018 18 N -0.916 5.916 19 Si 1.012 2.988 20 H -0.254 1.254 21 H -0.270 1.270 22 H -0.271 1.271 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.007 0.993 34 H 0.331 0.669 35 H 0.094 0.906 36 H 0.002 0.998 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 -2.732 10.455 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.147 4.147 5 C -0.070 4.070 6 N -0.311 5.311 7 C -0.005 4.005 8 C -0.168 4.168 9 C -0.078 4.078 10 C -0.211 4.211 11 C -0.094 4.094 12 C -0.271 4.271 13 C 0.068 3.932 14 O -0.127 6.127 15 C -0.487 4.487 16 H 0.114 0.886 17 C -0.216 4.216 18 N -0.555 5.555 19 Si 0.833 3.167 20 H -0.177 1.177 21 H -0.195 1.195 22 H -0.196 1.196 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.025 0.975 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.021 0.979 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.827 -2.820 10.949 11.936 hybrid contribution 0.249 0.275 -2.210 2.241 sum -3.578 -2.545 8.739 9.780 Atomic orbital electron populations 1.21763 0.94938 1.02079 1.01974 1.21522 0.96601 0.96108 1.01959 1.21532 0.93738 0.97634 1.02128 1.21496 0.96170 0.95215 1.01816 1.22024 0.87199 0.97908 0.99842 1.60792 1.07685 1.13381 1.49198 1.20456 0.90557 0.90013 0.99442 1.19222 0.95297 1.10574 0.91713 1.20993 0.94515 0.96377 0.95958 1.21162 0.93982 1.07378 0.98606 1.21166 1.00303 0.96292 0.91631 1.21300 0.93588 1.12033 1.00129 1.19771 0.91794 0.94092 0.87529 1.83925 1.35566 1.80451 1.12730 1.21787 0.91782 1.52381 0.82737 0.88592 1.26422 0.97284 0.96157 1.01708 1.70173 1.09444 1.49008 1.26825 0.84606 0.78076 0.78413 0.75637 1.17728 1.19460 1.19570 0.93112 0.92015 0.92044 0.92946 0.91374 0.90726 0.92988 0.94010 0.90733 0.89676 0.97497 0.85261 0.88806 0.97948 0.83580 0.83298 0.84113 0.86726 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.86 16 2 C -0.12 -2.54 5.93 30.60 0.18 -2.36 16 3 C -0.11 -2.61 5.21 30.59 0.16 -2.45 16 4 C -0.11 -3.11 5.47 30.59 0.17 -2.94 16 5 C 0.06 1.95 5.68 86.30 0.49 2.44 16 6 N -0.68 -26.42 6.49 -517.96 -3.36 -29.78 16 7 C 0.12 4.97 5.48 85.56 0.47 5.43 16 8 C -0.17 -7.00 5.41 -19.75 -0.11 -7.11 16 9 C -0.06 -2.03 9.66 22.25 0.22 -1.81 16 10 C -0.19 -6.01 10.04 22.30 0.22 -5.78 16 11 C -0.08 -2.63 10.04 22.25 0.22 -2.41 16 12 C -0.25 -11.09 9.17 22.39 0.21 -10.88 16 13 C 0.12 5.86 6.62 22.58 0.15 6.01 16 14 O -0.22 -12.85 8.95 -22.80 -0.20 -13.06 16 15 C -0.41 -23.70 9.49 67.92 0.64 -23.06 16 16 H 0.10 5.18 5.20 -2.91 -0.02 5.17 16 17 C -0.02 -1.01 5.49 84.83 0.47 -0.55 16 18 N -0.92 -55.49 13.67 21.61 0.30 -55.19 16 19 Si 1.01 43.09 29.55 68.60 2.03 45.12 16 20 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.33 15.04 8.68 -89.69 -0.78 14.26 16 35 H 0.09 3.11 8.00 -2.39 -0.02 3.10 16 36 H 0.00 0.11 7.86 -2.39 -0.02 0.09 16 37 H 0.15 3.92 8.04 -2.91 -0.02 3.90 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.11 5.18 5.64 -2.91 -0.02 5.17 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -66.44 341.01 3.18 -63.26 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.22 Total: 36.98 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 4.20 Total: -47.33 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -3.07 Total: -84.97 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.20 Total: -13.06 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -66.44 3.18 -63.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035042967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.507 kcal (2) G-P(sol) polarization free energy of solvation -66.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds