Wall clock time and date at job start Mon Mar 30 2020 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.53005 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46880 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47002 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47099 * 180.02562 * 6 5 4 8 8 C 1.39676 * 120.00079 * 179.97438 * 7 6 5 9 9 C 1.39012 * 120.03933 * 359.97201 * 8 7 6 10 10 C 1.38143 * 120.06228 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72769 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47045 * 90.00101 * 18 16 14 20 20 H 1.48501 * 109.46856 * 209.99702 * 18 16 14 21 21 H 1.48495 * 109.47115 * 329.99492 * 18 16 14 22 22 C 1.38746 * 120.04204 * 179.97438 * 8 7 6 23 23 H 1.08996 * 109.47233 * 60.00040 * 1 2 3 24 24 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47160 * 299.99880 * 1 2 3 26 26 H 1.09002 * 109.47160 * 240.00120 * 2 1 3 27 27 H 1.08996 * 109.47233 * 119.99960 * 2 1 3 28 28 H 1.08993 * 109.47281 * 59.99868 * 3 2 1 29 29 H 1.09004 * 109.47008 * 299.99684 * 3 2 1 30 30 H 1.08998 * 109.46718 * 60.00323 * 4 3 2 31 31 H 1.08996 * 109.47233 * 299.99960 * 4 3 2 32 32 H 1.08993 * 109.47281 * 59.99868 * 5 4 3 33 33 H 1.09004 * 109.47008 * 299.99684 * 5 4 3 34 34 H 1.08993 * 109.47564 * 59.99608 * 6 5 4 35 35 H 1.09004 * 109.46627 * 299.99484 * 6 5 4 36 36 H 0.96996 * 120.00220 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.96626 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.93082 * 179.97438 * 10 9 8 39 39 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 40 40 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.07071 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 7 6.0983 4.2663 0.0000 8 6 7.4715 4.5216 0.0005 9 6 8.3756 3.4657 0.0017 10 6 9.7339 3.7176 0.0027 11 6 10.1982 5.0190 -0.0030 12 6 9.3000 6.0786 0.0018 13 8 9.7572 7.3568 0.0019 14 6 8.8376 8.3359 -0.1151 15 1 7.7858 8.0909 -0.1212 16 6 9.2422 9.6573 -0.2276 17 7 10.5235 9.9557 -0.2197 18 14 7.9682 11.0136 -0.3903 19 1 7.5916 11.5037 0.9599 20 1 8.5362 12.1338 -1.1828 21 1 6.7641 10.4818 -1.0776 22 6 7.9349 5.8294 0.0000 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 3.7163 3.3994 0.8894 33 1 3.7170 3.3983 -0.8905 34 1 5.9733 2.3708 -0.8896 35 1 5.9732 2.3717 0.8903 36 1 5.4680 5.0036 -0.0004 37 1 8.0157 2.4474 0.0017 38 1 10.4344 2.8956 0.0040 39 1 11.2607 5.2126 -0.0069 40 1 10.8066 10.8802 -0.2981 41 1 7.2347 6.6516 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:06 Heat of formation + Delta-G solvation = -32.459992 kcal Electronic energy + Delta-G solvation = -18651.625750 eV Core-core repulsion = 15723.970551 eV Total energy + Delta-G solvation = -2927.655199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.02655 -37.43901 -36.46762 -34.80680 -32.54565 -32.07065 -29.52987 -28.50036 -27.02036 -25.19569 -23.89674 -21.99191 -21.37525 -21.09012 -20.35431 -17.81359 -17.21851 -16.27648 -15.62625 -15.00401 -15.00025 -14.79604 -14.17890 -14.14350 -13.64099 -13.61990 -13.30596 -13.25788 -12.83090 -12.41217 -12.17188 -12.12324 -11.75496 -11.59425 -11.39554 -11.21255 -11.07246 -10.86621 -10.84173 -10.71545 -10.66917 -10.52911 -10.35712 -9.35793 -9.32047 -8.72203 -7.30294 -6.72181 -6.37422 -3.96540 2.42906 2.62188 3.16317 3.17252 3.21680 3.79853 4.02638 4.49113 4.59412 4.73097 4.74960 4.87781 5.01029 5.12983 5.18636 5.23593 5.41336 5.41567 5.50046 5.52138 5.58792 5.66240 5.73871 5.77105 5.80653 5.89484 5.97391 6.04351 6.12195 6.12371 6.32616 6.41335 6.70016 6.70609 7.09380 7.19706 7.43625 7.53786 7.72022 8.07909 8.09223 8.26383 9.08774 9.81950 10.81052 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.003247 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.962890 B = 8621.383116 C = 9831.393540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.132 3.868 7 N -0.756 5.756 8 C 0.248 3.752 9 C -0.279 4.279 10 C -0.041 4.041 11 C -0.237 4.237 12 C 0.189 3.811 13 O -0.179 6.179 14 C -0.388 4.388 15 H 0.090 0.910 16 C 0.037 3.963 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.303 4.303 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.394 0.606 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.268 0.732 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.560 -15.933 0.231 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.169 4.169 6 C 0.007 3.993 7 N -0.388 5.388 8 C 0.147 3.853 9 C -0.302 4.302 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.501 5.501 18 Si 0.765 3.235 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.327 4.327 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.227 0.773 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.078 0.922 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.203 -15.823 0.229 21.944 hybrid contribution -0.955 0.972 -0.076 1.365 sum -16.158 -14.851 0.153 21.947 Atomic orbital electron populations 1.21785 0.96015 1.01496 1.01805 1.21543 0.95759 0.97028 1.02015 1.21623 0.95333 0.96696 1.02138 1.21510 0.95345 0.96189 1.02378 1.21779 0.94987 0.97509 1.02635 1.21178 0.93067 0.84375 1.00701 1.44554 1.03843 1.06260 1.84162 1.17483 0.82841 0.93068 0.91923 1.20077 0.92871 0.96410 1.20868 1.20378 0.94387 0.95149 0.96033 1.20037 0.98563 0.90812 1.16346 1.19071 0.91212 0.86008 0.90258 1.83986 1.35625 1.10063 1.78552 1.21291 0.88515 0.84782 1.51864 0.89235 1.25269 0.97156 0.97429 0.96777 1.70046 1.14078 1.19419 1.46517 0.85734 0.79446 0.79785 0.78555 1.19991 1.20321 1.19330 1.20508 0.95931 0.94781 1.21438 0.92780 0.92882 0.92789 0.92051 0.92053 0.92002 0.91994 0.91747 0.91742 0.91489 0.91489 0.92866 0.92876 0.77256 0.87899 0.87220 0.86924 0.92161 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 5 C -0.13 -1.23 5.33 -26.73 -0.14 -1.37 16 6 C 0.13 1.59 4.91 -4.04 -0.02 1.57 16 7 N -0.76 -11.69 5.73 -58.65 -0.34 -12.03 16 8 C 0.25 4.83 6.65 -83.81 -0.56 4.27 16 9 C -0.28 -5.18 9.31 -39.33 -0.37 -5.54 16 10 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 11 C -0.24 -5.30 9.99 -39.36 -0.39 -5.70 16 12 C 0.19 4.79 6.64 -39.14 -0.26 4.53 16 13 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 14 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 15 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 17 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 18 Si 0.94 20.94 29.55 -169.99 -5.02 15.91 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.30 -6.90 9.01 -39.20 -0.35 -7.25 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 35 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 36 H 0.39 5.64 8.48 -40.82 -0.35 5.30 16 37 H 0.10 1.65 6.73 -52.49 -0.35 1.29 16 38 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 39 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 2.82 5.64 -52.49 -0.30 2.52 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -31.28 339.09 -8.58 -39.86 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.72 Total: 5.74 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -2.36 Total: -24.17 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.42 Total: -37.16 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.28 -8.58 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.395 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds