Wall clock time and date at job start Mon Mar 30 2020 07:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.53005 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46880 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47002 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47099 * 180.02562 * 6 5 4 8 8 C 1.39676 * 120.00079 * 179.97438 * 7 6 5 9 9 C 1.39012 * 120.03933 * 359.97201 * 8 7 6 10 10 C 1.38143 * 120.06228 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72769 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47045 * 90.00101 * 18 16 14 20 20 H 1.48501 * 109.46856 * 209.99702 * 18 16 14 21 21 H 1.48495 * 109.47115 * 329.99492 * 18 16 14 22 22 C 1.38746 * 120.04204 * 179.97438 * 8 7 6 23 23 H 1.08996 * 109.47233 * 60.00040 * 1 2 3 24 24 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47160 * 299.99880 * 1 2 3 26 26 H 1.09002 * 109.47160 * 240.00120 * 2 1 3 27 27 H 1.08996 * 109.47233 * 119.99960 * 2 1 3 28 28 H 1.08993 * 109.47281 * 59.99868 * 3 2 1 29 29 H 1.09004 * 109.47008 * 299.99684 * 3 2 1 30 30 H 1.08998 * 109.46718 * 60.00323 * 4 3 2 31 31 H 1.08996 * 109.47233 * 299.99960 * 4 3 2 32 32 H 1.08993 * 109.47281 * 59.99868 * 5 4 3 33 33 H 1.09004 * 109.47008 * 299.99684 * 5 4 3 34 34 H 1.08993 * 109.47564 * 59.99608 * 6 5 4 35 35 H 1.09004 * 109.46627 * 299.99484 * 6 5 4 36 36 H 0.96996 * 120.00220 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.96626 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.93082 * 179.97438 * 10 9 8 39 39 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 40 40 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.07071 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 7 6.0983 4.2663 0.0000 8 6 7.4715 4.5216 0.0005 9 6 8.3756 3.4657 0.0017 10 6 9.7339 3.7176 0.0027 11 6 10.1982 5.0190 -0.0030 12 6 9.3000 6.0786 0.0018 13 8 9.7572 7.3568 0.0019 14 6 8.8376 8.3359 -0.1151 15 1 7.7858 8.0909 -0.1212 16 6 9.2422 9.6573 -0.2276 17 7 10.5235 9.9557 -0.2197 18 14 7.9682 11.0136 -0.3903 19 1 7.5916 11.5037 0.9599 20 1 8.5362 12.1338 -1.1828 21 1 6.7641 10.4818 -1.0776 22 6 7.9349 5.8294 0.0000 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 3.7163 3.3994 0.8894 33 1 3.7170 3.3983 -0.8905 34 1 5.9733 2.3708 -0.8896 35 1 5.9732 2.3717 0.8903 36 1 5.4680 5.0036 -0.0004 37 1 8.0157 2.4474 0.0017 38 1 10.4344 2.8956 0.0040 39 1 11.2607 5.2126 -0.0069 40 1 10.8066 10.8802 -0.2981 41 1 7.2347 6.6516 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:05 Heat of formation + Delta-G solvation = -50.528353 kcal Electronic energy + Delta-G solvation = -18652.409253 eV Core-core repulsion = 15723.970551 eV Total energy + Delta-G solvation = -2928.438702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76276 -38.89408 -37.49820 -35.97728 -34.24136 -33.35831 -30.91971 -30.01706 -28.13640 -27.19592 -24.80241 -23.46935 -22.33558 -21.94023 -21.69808 -19.71292 -18.95927 -17.15463 -16.93531 -16.73114 -16.25732 -15.84236 -15.78709 -15.45774 -15.41534 -14.61783 -14.45911 -14.23162 -14.18142 -13.82999 -13.48006 -13.20012 -13.06217 -12.75370 -12.53428 -12.41012 -12.35261 -12.15379 -12.00567 -11.77979 -11.67875 -11.46619 -11.33874 -11.24415 -10.92396 -10.59809 -9.10265 -8.44941 -8.23142 -6.13364 0.76309 0.92102 1.34263 1.44835 1.52233 2.18896 2.56685 2.89667 3.27009 3.59796 3.79797 4.00153 4.10807 4.20810 4.23672 4.35068 4.40275 4.50292 4.58700 4.62078 4.70695 4.77523 4.81201 4.92468 4.92967 5.04276 5.07895 5.12513 5.16170 5.17055 5.23797 5.27052 5.38440 5.47259 5.49251 5.53938 5.75629 5.80595 6.04670 6.12034 6.60765 6.87819 7.00243 7.83486 8.78680 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.003247 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.962890 B = 8621.383116 C = 9831.393540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.127 3.873 7 N -0.748 5.748 8 C 0.253 3.747 9 C -0.265 4.265 10 C -0.026 4.026 11 C -0.262 4.262 12 C 0.151 3.849 13 O -0.232 6.232 14 C -0.410 4.410 15 H 0.099 0.901 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.020 2.980 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.318 4.318 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.107 0.893 40 H 0.272 0.728 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 -18.259 0.153 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.149 4.149 5 C -0.161 4.161 6 C 0.003 3.997 7 N -0.378 5.378 8 C 0.149 3.851 9 C -0.288 4.288 10 C -0.045 4.045 11 C -0.283 4.283 12 C 0.100 3.900 13 O -0.139 6.139 14 C -0.487 4.487 15 H 0.116 0.884 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.342 4.342 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.682 -18.221 0.155 25.390 hybrid contribution -0.288 1.339 -0.037 1.370 sum -17.970 -16.882 0.117 24.656 Atomic orbital electron populations 1.21794 0.95765 1.01864 1.01789 1.21540 0.96013 0.96594 1.02178 1.21599 0.94893 0.97111 1.02025 1.21474 0.95672 0.95016 1.02782 1.21715 0.92969 0.98671 1.02732 1.21434 0.94839 0.82166 1.01217 1.44752 1.02323 1.08257 1.82479 1.17596 0.85022 0.91974 0.90540 1.20566 0.92440 0.97833 1.17959 1.20839 0.95647 0.94615 0.93376 1.20272 0.98199 0.91841 1.17982 1.19654 0.93079 0.85426 0.91841 1.83948 1.36859 1.11728 1.81318 1.21781 0.89079 0.85491 1.52322 0.88419 1.26606 0.99699 0.99908 0.96028 1.70196 1.16656 1.20200 1.48987 0.84578 0.76592 0.75837 0.79110 1.18791 1.19515 1.17776 1.20526 0.94853 0.96280 1.22540 0.92815 0.92367 0.92814 0.91893 0.91882 0.92129 0.92139 0.91355 0.91325 0.91419 0.91455 0.92219 0.92190 0.76693 0.84088 0.82942 0.87489 0.91899 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.13 -1.37 5.93 30.60 0.18 -1.19 16 3 C -0.12 -1.42 5.21 30.60 0.16 -1.26 16 4 C -0.11 -1.40 5.21 30.60 0.16 -1.24 16 5 C -0.12 -1.92 5.33 30.59 0.16 -1.76 16 6 C 0.13 2.60 4.91 86.38 0.42 3.02 16 7 N -0.75 -21.16 5.73 -339.47 -1.95 -23.10 16 8 C 0.25 9.36 6.65 38.20 0.25 9.61 16 9 C -0.27 -8.87 9.31 22.43 0.21 -8.66 16 10 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 11 C -0.26 -11.89 9.99 22.42 0.22 -11.67 16 12 C 0.15 7.98 6.64 22.56 0.15 8.13 16 13 O -0.23 -14.58 9.76 -22.78 -0.22 -14.81 16 14 C -0.41 -24.75 9.49 67.92 0.64 -24.10 16 15 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 16 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 17 N -0.92 -57.96 13.67 21.61 0.30 -57.66 16 18 Si 1.02 43.91 29.55 68.60 2.03 45.93 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 22 C -0.32 -14.71 9.01 22.52 0.20 -14.51 16 23 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 35 H 0.06 1.20 7.95 -2.38 -0.02 1.18 16 36 H 0.40 10.63 8.48 -92.71 -0.79 9.84 16 37 H 0.14 3.70 6.73 -2.91 -0.02 3.68 16 38 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16 Total: -1.00 -71.96 339.09 4.54 -67.41 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.21 Total: 28.46 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 4.17 Total: -46.23 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.65 Total: -80.77 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.22 Total: -14.81 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.96 4.54 -67.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.885 kcal (2) G-P(sol) polarization free energy of solvation -71.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds