Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 110.99789 * 2 1 4 4 C 1.50703 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.94274 * 269.73082 * 4 3 2 6 6 C 1.38152 * 120.05531 * 179.72626 * 5 4 3 7 7 C 1.50701 * 120.02768 * 180.24643 * 6 5 4 8 8 C 1.38732 * 119.94134 * 0.52327 * 6 5 4 9 9 O 1.35900 * 120.05574 * 179.72518 * 8 6 5 10 10 C 1.42901 * 116.99928 * 270.01917 * 9 8 6 11 11 C 1.53002 * 109.46840 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46822 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00150 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99546 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00142 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46908 * 89.99999 * 16 14 12 18 18 H 1.48502 * 109.47175 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.47082 * 330.00396 * 16 14 12 20 20 C 1.38739 * 119.88756 * 359.75065 * 8 6 5 21 21 C 1.50693 * 120.02552 * 179.97438 * 20 8 6 22 22 C 1.38140 * 119.94434 * 359.97438 * 20 8 6 23 23 H 1.08996 * 109.47424 * 299.99656 * 1 2 3 24 24 H 1.09002 * 109.47411 * 60.00282 * 1 2 3 25 25 H 1.09007 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.00902 * 111.00273 * 123.95522 * 2 1 3 27 27 H 1.08992 * 109.47459 * 299.99826 * 3 2 1 28 28 H 1.09004 * 109.47040 * 59.99976 * 3 2 1 29 29 H 1.08000 * 119.97850 * 359.97438 * 5 4 3 30 30 H 1.08997 * 109.46997 * 270.27062 * 7 6 5 31 31 H 1.08993 * 109.46951 * 30.27577 * 7 6 5 32 32 H 1.09003 * 109.46562 * 150.27660 * 7 6 5 33 33 H 1.08993 * 109.47120 * 300.00189 * 10 9 8 34 34 H 1.09000 * 109.46692 * 60.00574 * 10 9 8 35 35 H 1.08997 * 109.47300 * 300.00517 * 11 10 9 36 36 H 1.09004 * 109.46763 * 60.00333 * 11 10 9 37 37 H 0.97001 * 119.99566 * 179.97438 * 15 14 12 38 38 H 1.09010 * 109.46900 * 270.01419 * 21 20 8 39 39 H 1.08995 * 109.47678 * 30.01776 * 21 20 8 40 40 H 1.09001 * 109.47418 * 150.01784 * 21 20 8 41 41 H 1.08004 * 119.97473 * 180.02562 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1914 1.3188 1.1990 6 6 5.5722 1.2763 1.2023 7 6 6.3230 1.2570 2.5089 8 6 6.2673 1.2572 0.0018 9 8 7.6258 1.2210 0.0024 10 6 8.3082 2.4765 0.0025 11 6 9.8192 2.2357 0.0038 12 6 10.5388 3.5598 0.0045 13 1 9.9750 4.4809 0.0036 14 6 11.9172 3.5952 0.0051 15 7 12.6038 2.4735 0.0047 16 14 12.8092 5.2364 0.0053 17 1 13.0449 5.6716 1.4055 18 1 14.1113 5.0922 -0.6941 19 1 11.9806 6.2503 -0.6953 20 6 5.5732 1.2756 -1.1993 21 6 6.3250 1.2555 -2.5051 22 6 4.1923 1.3123 -1.1972 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8306 -0.5261 0.7813 27 1 1.6459 1.8948 -0.8899 28 1 1.6458 1.8948 0.8900 29 1 3.6500 1.3382 2.1333 30 1 6.5314 2.2796 2.8233 31 1 5.7190 0.7595 3.2676 32 1 7.2617 0.7179 2.3805 33 1 8.0306 3.0410 -0.8877 34 1 8.0299 3.0412 0.8923 35 1 10.0964 1.6714 0.8941 36 1 10.0978 1.6708 -0.8858 37 1 13.5735 2.4985 0.0048 38 1 6.5339 2.2780 -2.8199 39 1 7.2634 0.7163 -2.3759 40 1 5.7216 0.7578 -3.2642 41 1 3.6514 1.3263 -2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037701798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = -36.980820 kcal Electronic energy + Delta-G solvation = -19423.948486 eV Core-core repulsion = 16496.097249 eV Total energy + Delta-G solvation = -2927.851237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00379 -37.52948 -35.77042 -33.37333 -33.31411 -31.57528 -29.96450 -27.57422 -26.53907 -26.18161 -24.60022 -23.54011 -21.02516 -20.76463 -20.36874 -17.40397 -16.61387 -16.11084 -15.89881 -14.95728 -14.77362 -14.65579 -14.22024 -13.84627 -13.79983 -13.41779 -12.95304 -12.91941 -12.80494 -12.45230 -12.29718 -12.26278 -12.11498 -11.60010 -11.39437 -11.29778 -11.09938 -10.95393 -10.87703 -10.52355 -10.37837 -9.57487 -9.27539 -9.09915 -8.76117 -8.40798 -8.39567 -8.09008 -6.06770 -4.10842 1.37362 1.51428 3.28915 3.34967 3.38032 3.59194 4.18451 4.35201 4.55311 4.72001 4.82579 4.99957 5.06678 5.14685 5.28445 5.29456 5.32332 5.45165 5.57227 5.61161 5.69563 5.78413 5.87790 5.90380 6.01237 6.02318 6.15476 6.22232 6.32146 6.53244 6.58372 6.62443 6.70472 6.77655 6.84451 7.00611 7.08133 7.58081 7.72450 7.88824 8.23331 8.32414 8.95290 9.53160 11.04708 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038861 B = 0.003562 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.343645 B = 7858.313517 C = 8094.328203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.103 3.897 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.104 4.104 7 C -0.112 4.112 8 C 0.113 3.887 9 O -0.339 6.339 10 C 0.079 3.921 11 C 0.027 3.973 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.092 4.092 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.344 0.656 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.128 -3.029 0.759 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C -0.025 4.025 4 C -0.100 4.100 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.168 4.168 8 C 0.069 3.931 9 O -0.257 6.257 10 C 0.006 3.994 11 C -0.010 4.010 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.105 4.105 21 C -0.169 4.169 22 C -0.111 4.111 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.161 0.839 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.784 -3.315 0.068 21.047 hybrid contribution 0.221 1.325 0.948 1.644 sum -20.563 -1.990 1.016 20.684 Atomic orbital electron populations 1.22209 0.87841 1.01898 1.00333 1.60436 1.07381 1.13913 1.50403 1.20835 0.90933 0.89726 1.01013 1.19561 0.94437 1.02805 0.93220 1.20693 0.93012 1.01983 0.97164 1.20206 0.93736 1.01057 0.95497 1.20690 1.00630 1.02504 0.92999 1.18554 0.84595 0.98819 0.91160 1.86020 1.13210 1.32398 1.94075 1.23149 0.95401 0.82058 0.98794 1.19091 0.85567 0.97712 0.98631 1.21003 0.91353 0.92013 1.51889 0.92522 1.24982 0.97551 0.96614 0.95031 1.69978 1.06864 1.26059 1.49944 0.86522 0.79123 0.83749 0.78191 1.20540 1.21071 1.19796 1.20264 0.93857 1.00906 0.95495 1.20696 1.00609 1.02503 0.93053 1.20686 0.92650 1.00319 0.97452 0.96124 0.91703 0.91384 0.83860 0.90323 0.94553 0.86513 0.91332 0.92046 0.90357 0.94250 0.94299 0.95604 0.95569 0.92777 0.91320 0.90397 0.91892 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.70 60.06 0.64 0.84 16 2 N -0.69 -6.57 6.84 -122.42 -0.84 -7.41 16 3 C 0.10 1.02 5.81 -4.97 -0.03 0.99 16 4 C -0.10 -1.25 5.39 -104.60 -0.56 -1.81 16 5 C -0.11 -1.44 9.35 -39.60 -0.37 -1.81 16 6 C -0.10 -1.63 5.89 -104.47 -0.62 -2.25 16 7 C -0.11 -1.61 9.79 36.01 0.35 -1.26 16 8 C 0.11 2.01 5.67 -39.21 -0.22 1.79 16 9 O -0.34 -7.02 8.15 -19.43 -0.16 -7.18 16 10 C 0.08 1.74 6.00 37.16 0.22 1.96 16 11 C 0.03 0.72 5.34 -27.88 -0.15 0.57 16 12 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.10 -1.66 5.89 -104.48 -0.62 -2.28 16 21 C -0.11 -1.65 9.79 36.00 0.35 -1.30 16 22 C -0.09 -1.26 9.35 -39.61 -0.37 -1.63 16 23 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.34 3.11 8.81 -39.29 -0.35 2.76 16 27 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 39 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 40 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -30.45 344.35 -8.87 -39.31 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.00 Total: -0.74 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.78 Total: -19.66 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: -0.10 Total: -33.33 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.16 Total: -7.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.45 -8.87 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037701798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.333 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds