Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 110.99789 * 2 1 4 4 C 1.50703 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.94274 * 269.73082 * 4 3 2 6 6 C 1.38152 * 120.05531 * 179.72626 * 5 4 3 7 7 C 1.50701 * 120.02768 * 180.24643 * 6 5 4 8 8 C 1.38732 * 119.94134 * 0.52327 * 6 5 4 9 9 O 1.35900 * 120.05574 * 179.72518 * 8 6 5 10 10 C 1.42901 * 116.99928 * 270.01917 * 9 8 6 11 11 C 1.53002 * 109.46840 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46822 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00150 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99546 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00142 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46908 * 89.99999 * 16 14 12 18 18 H 1.48502 * 109.47175 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.47082 * 330.00396 * 16 14 12 20 20 C 1.38739 * 119.88756 * 359.75065 * 8 6 5 21 21 C 1.50693 * 120.02552 * 179.97438 * 20 8 6 22 22 C 1.38140 * 119.94434 * 359.97438 * 20 8 6 23 23 H 1.08996 * 109.47424 * 299.99656 * 1 2 3 24 24 H 1.09002 * 109.47411 * 60.00282 * 1 2 3 25 25 H 1.09007 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.00902 * 111.00273 * 123.95522 * 2 1 3 27 27 H 1.08992 * 109.47459 * 299.99826 * 3 2 1 28 28 H 1.09004 * 109.47040 * 59.99976 * 3 2 1 29 29 H 1.08000 * 119.97850 * 359.97438 * 5 4 3 30 30 H 1.08997 * 109.46997 * 270.27062 * 7 6 5 31 31 H 1.08993 * 109.46951 * 30.27577 * 7 6 5 32 32 H 1.09003 * 109.46562 * 150.27660 * 7 6 5 33 33 H 1.08993 * 109.47120 * 300.00189 * 10 9 8 34 34 H 1.09000 * 109.46692 * 60.00574 * 10 9 8 35 35 H 1.08997 * 109.47300 * 300.00517 * 11 10 9 36 36 H 1.09004 * 109.46763 * 60.00333 * 11 10 9 37 37 H 0.97001 * 119.99566 * 179.97438 * 15 14 12 38 38 H 1.09010 * 109.46900 * 270.01419 * 21 20 8 39 39 H 1.08995 * 109.47678 * 30.01776 * 21 20 8 40 40 H 1.09001 * 109.47418 * 150.01784 * 21 20 8 41 41 H 1.08004 * 119.97473 * 180.02562 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1914 1.3188 1.1990 6 6 5.5722 1.2763 1.2023 7 6 6.3230 1.2570 2.5089 8 6 6.2673 1.2572 0.0018 9 8 7.6258 1.2210 0.0024 10 6 8.3082 2.4765 0.0025 11 6 9.8192 2.2357 0.0038 12 6 10.5388 3.5598 0.0045 13 1 9.9750 4.4809 0.0036 14 6 11.9172 3.5952 0.0051 15 7 12.6038 2.4735 0.0047 16 14 12.8092 5.2364 0.0053 17 1 13.0449 5.6716 1.4055 18 1 14.1113 5.0922 -0.6941 19 1 11.9806 6.2503 -0.6953 20 6 5.5732 1.2756 -1.1993 21 6 6.3250 1.2555 -2.5051 22 6 4.1923 1.3123 -1.1972 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8306 -0.5261 0.7813 27 1 1.6459 1.8948 -0.8899 28 1 1.6458 1.8948 0.8900 29 1 3.6500 1.3382 2.1333 30 1 6.5314 2.2796 2.8233 31 1 5.7190 0.7595 3.2676 32 1 7.2617 0.7179 2.3805 33 1 8.0306 3.0410 -0.8877 34 1 8.0299 3.0412 0.8923 35 1 10.0964 1.6714 0.8941 36 1 10.0978 1.6708 -0.8858 37 1 13.5735 2.4985 0.0048 38 1 6.5339 2.2780 -2.8199 39 1 7.2634 0.7163 -2.3759 40 1 5.7216 0.7578 -3.2642 41 1 3.6514 1.3263 -2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037701798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -55.179486 kcal Electronic energy + Delta-G solvation = -19424.737639 eV Core-core repulsion = 16496.097249 eV Total energy + Delta-G solvation = -2928.640390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23280 -38.80706 -36.70222 -35.39969 -34.52537 -32.82710 -31.80406 -28.60604 -27.64280 -27.47572 -26.30949 -24.35594 -22.99567 -21.91671 -21.48538 -19.03844 -17.99785 -17.74106 -16.87101 -16.66931 -15.97744 -15.76661 -15.49722 -15.24349 -14.99722 -14.41359 -14.32970 -14.12664 -14.10795 -13.87731 -13.40975 -13.37493 -13.11571 -13.09508 -12.75159 -12.72684 -12.52724 -12.49965 -12.22944 -11.99867 -11.95595 -11.50316 -11.42496 -10.76746 -10.54097 -9.54703 -9.47368 -9.23074 -8.25690 -6.39398 0.19405 0.39177 1.40101 1.42321 1.53599 2.32896 2.48152 3.08023 3.08151 3.49653 3.80316 3.83529 3.86883 4.27544 4.32110 4.35912 4.40421 4.46489 4.50957 4.58197 4.64525 4.69833 4.72234 4.74211 4.75700 4.76478 4.86586 4.94957 5.07795 5.15717 5.34522 5.34863 5.45192 5.51175 5.59099 5.67975 5.70160 5.90229 6.03501 6.10728 6.42186 6.72493 6.77047 7.30600 8.87150 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038861 B = 0.003562 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.343645 B = 7858.313517 C = 8094.328203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.704 5.704 3 C 0.107 3.893 4 C -0.087 4.087 5 C -0.105 4.105 6 C -0.114 4.114 7 C -0.109 4.109 8 C 0.067 3.933 9 O -0.355 6.355 10 C 0.099 3.901 11 C 0.034 3.966 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.974 3.026 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.261 1.261 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.094 4.094 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.345 0.655 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.147 0.853 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.043 0.957 35 H -0.003 1.003 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.718 -1.757 1.007 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.335 5.335 3 C -0.021 4.021 4 C -0.087 4.087 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.166 4.166 8 C 0.023 3.977 9 O -0.273 6.273 10 C 0.026 3.974 11 C -0.004 4.004 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.797 3.203 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.185 1.185 20 C -0.116 4.116 21 C -0.166 4.166 22 C -0.113 4.113 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.163 0.837 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.165 0.835 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.404 -2.051 0.317 23.496 hybrid contribution 0.880 0.832 0.872 1.492 sum -22.524 -1.219 1.189 22.589 Atomic orbital electron populations 1.22246 0.86397 1.02637 1.00889 1.60424 1.08791 1.13535 1.50769 1.20833 0.88695 0.90382 1.02196 1.19936 0.96136 1.00129 0.92532 1.20990 0.91871 1.00700 0.98812 1.20404 0.95010 1.01108 0.94960 1.20679 0.99850 1.02436 0.93632 1.18912 0.83145 1.02585 0.93024 1.85983 1.15582 1.31398 1.94363 1.22643 0.92765 0.83030 0.99004 1.18903 0.89029 0.96693 0.95727 1.21397 0.92165 0.92716 1.52060 0.91607 1.26019 0.98477 1.00894 0.94175 1.70121 1.07379 1.28794 1.50685 0.85319 0.77670 0.78582 0.78705 1.19477 1.20520 1.18465 1.20434 0.95023 1.01148 0.95025 1.20678 0.99807 1.02428 0.93715 1.20948 0.91636 0.99652 0.99021 0.95203 0.91438 0.90647 0.83672 0.89518 0.93062 0.83538 0.91341 0.89022 0.93174 0.93937 0.93878 0.98506 0.98531 0.92448 0.91291 0.93127 0.89229 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 127.69 1.37 1.68 16 2 N -0.70 -11.10 6.84 -541.22 -3.70 -14.81 16 3 C 0.11 1.73 5.81 85.56 0.50 2.23 16 4 C -0.09 -1.93 5.39 -19.85 -0.11 -2.04 16 5 C -0.11 -2.49 9.35 22.26 0.21 -2.28 16 6 C -0.11 -3.51 5.89 -19.77 -0.12 -3.62 16 7 C -0.11 -3.15 9.79 71.24 0.70 -2.45 16 8 C 0.07 2.43 5.67 22.51 0.13 2.55 16 9 O -0.36 -15.53 8.15 -92.42 -0.75 -16.29 16 10 C 0.10 4.57 6.00 71.98 0.43 5.00 16 11 C 0.03 1.89 5.34 29.85 0.16 2.05 16 12 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 13 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 16 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.12 -3.65 5.89 -19.77 -0.12 -3.76 16 21 C -0.11 -3.27 9.79 71.23 0.70 -2.58 16 22 C -0.09 -2.37 9.35 22.25 0.21 -2.16 16 23 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.35 5.19 8.81 -89.69 -0.79 4.40 16 27 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 28 H 0.05 0.70 8.08 -2.38 -0.02 0.68 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 32 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 1.76 7.53 -2.39 -0.02 1.74 16 40 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 41 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -67.75 344.35 2.80 -64.94 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.20 Total: 13.17 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.75 Total: -36.09 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -3.42 Total: -71.88 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.75 Total: -16.29 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.75 2.80 -64.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037701798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.761 kcal (2) G-P(sol) polarization free energy of solvation -67.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds