Wall clock time and date at job start Mon Mar 30 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 110.99928 * 2 1 4 4 H 1.09002 * 109.47316 * 35.00339 * 3 2 1 5 5 C 1.52993 * 109.47069 * 274.99558 * 3 2 1 6 6 C 1.50707 * 109.46704 * 154.99936 * 3 2 1 7 7 C 1.38161 * 120.03049 * 25.23568 * 6 3 2 8 8 C 1.38250 * 120.05645 * 180.25526 * 7 6 3 9 9 C 1.50692 * 119.94292 * 179.74354 * 8 7 6 10 10 C 1.38288 * 120.10669 * 359.76010 * 8 7 6 11 11 C 1.38121 * 120.05937 * 0.02562 * 10 8 7 12 12 C 1.38715 * 120.02369 * 204.99453 * 6 3 2 13 13 O 1.35900 * 120.05747 * 0.02562 * 12 6 3 14 14 C 1.42895 * 116.99858 * 179.72465 * 13 12 6 15 15 C 1.53006 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47510 * 119.99847 * 20 18 16 23 23 H 1.48506 * 109.47246 * 239.99882 * 20 18 16 24 24 H 1.09006 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47286 * 300.00321 * 1 2 3 26 26 H 1.09002 * 109.47354 * 59.99907 * 1 2 3 27 27 H 1.00905 * 110.99563 * 123.95573 * 2 1 3 28 28 H 1.09001 * 109.47005 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.47689 * 300.00552 * 5 3 2 30 30 H 1.09008 * 109.47147 * 60.00506 * 5 3 2 31 31 H 1.08004 * 119.97211 * 359.97438 * 7 6 3 32 32 H 1.08999 * 109.47020 * 270.01345 * 9 8 7 33 33 H 1.08996 * 109.47566 * 30.02096 * 9 8 7 34 34 H 1.09003 * 109.46942 * 150.02172 * 9 8 7 35 35 H 1.08002 * 119.96782 * 179.97438 * 10 8 7 36 36 H 1.08002 * 120.02475 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.47626 * 59.99849 * 14 13 12 38 38 H 1.09001 * 109.47255 * 299.99590 * 14 13 12 39 39 H 1.09001 * 109.47002 * 299.99477 * 15 14 13 40 40 H 1.08993 * 109.46955 * 59.99914 * 15 14 13 41 41 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5895 5 6 2.0609 1.8925 -1.4370 6 6 3.3776 1.3788 0.6005 7 6 4.1525 0.2355 0.5662 8 6 5.4185 0.2402 1.1217 9 6 6.2593 -1.0099 1.0880 10 6 5.9144 1.3901 1.7083 11 6 5.1454 2.5370 1.7412 12 6 3.8748 2.5351 1.1837 13 8 3.1162 3.6622 1.2148 14 6 3.6903 4.8136 1.8366 15 6 2.6964 5.9753 1.7751 16 6 3.3021 7.1898 2.4303 17 1 4.2963 7.1381 2.8491 18 6 2.5867 8.3665 2.4961 19 7 1.3759 8.4293 1.9866 20 14 3.3371 9.8717 3.3089 21 1 4.6995 9.5419 3.7994 22 1 3.4204 10.9777 2.3215 23 1 2.4880 10.2919 4.4525 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8305 -0.5262 0.7814 28 1 2.4519 2.9100 -1.4370 29 1 2.7165 1.2516 -2.0265 30 1 1.0611 1.8872 -1.8713 31 1 3.7672 -0.6640 0.1092 32 1 6.0666 -1.6015 1.9829 33 1 6.0054 -1.5949 0.2040 34 1 7.3141 -0.7375 1.0527 35 1 6.9036 1.3911 2.1419 36 1 5.5330 3.4346 2.1999 37 1 4.6055 5.0909 1.3134 38 1 3.9212 4.5873 2.8775 39 1 2.4660 6.2016 0.7340 40 1 1.7811 5.6984 2.2980 41 1 0.8724 9.2570 2.0332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037710763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:59 Heat of formation + Delta-G solvation = -33.152703 kcal Electronic energy + Delta-G solvation = -19678.883637 eV Core-core repulsion = 16751.198399 eV Total energy + Delta-G solvation = -2927.685237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12152 -37.56287 -36.50613 -33.46468 -32.13841 -31.21105 -30.11105 -29.11727 -26.30308 -25.38609 -24.86073 -23.22182 -21.55948 -20.44398 -19.90581 -17.85509 -16.30199 -16.07562 -15.82042 -15.39042 -14.62347 -14.58280 -14.22677 -14.04802 -13.92081 -13.60193 -13.11340 -12.86402 -12.52961 -12.34495 -12.31440 -12.06324 -11.86440 -11.64335 -11.42424 -11.19560 -11.14615 -10.88423 -10.82193 -10.67238 -10.29106 -9.82853 -9.67560 -9.30486 -8.69028 -8.47639 -8.46999 -7.67002 -6.12519 -4.17143 1.49235 1.64748 3.24950 3.32179 3.35680 3.83240 3.90173 4.22700 4.39686 4.76791 4.99511 5.07054 5.24133 5.30762 5.35644 5.37024 5.48744 5.57718 5.60826 5.63306 5.69389 5.84758 5.85958 5.96087 6.01346 6.01765 6.08302 6.10656 6.24967 6.44059 6.49092 6.53366 6.68726 6.74274 7.01419 7.10771 7.35524 7.48588 7.61510 7.79368 8.04058 8.21822 8.88620 9.47447 10.99074 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.004514 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.694738 B = 6201.470821 C = 7339.718772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.691 5.691 3 C 0.133 3.867 4 H 0.061 0.939 5 C -0.130 4.130 6 C -0.130 4.130 7 C -0.072 4.072 8 C -0.141 4.141 9 C -0.104 4.104 10 C -0.081 4.081 11 C -0.208 4.208 12 C 0.146 3.854 13 O -0.313 6.313 14 C 0.065 3.935 15 C 0.026 3.974 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.340 0.660 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -17.909 -2.810 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.322 5.322 3 C 0.024 3.976 4 H 0.079 0.921 5 C -0.188 4.188 6 C -0.131 4.131 7 C -0.091 4.091 8 C -0.141 4.141 9 C -0.160 4.160 10 C -0.099 4.099 11 C -0.227 4.227 12 C 0.098 3.902 13 O -0.226 6.226 14 C -0.009 4.009 15 C -0.011 4.011 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.527 5.527 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.158 0.842 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.310 -17.798 -3.595 18.662 hybrid contribution 0.380 1.345 1.526 2.070 sum 4.690 -16.453 -2.069 17.233 Atomic orbital electron populations 1.22231 0.87920 1.01442 1.00748 1.60624 1.07727 1.14173 1.49704 1.20222 0.91576 0.89040 0.96808 0.92113 1.21702 1.01513 1.00899 0.94647 1.19225 0.97585 0.92242 1.04016 1.20680 0.92878 0.97338 0.98169 1.19706 0.95814 0.95917 1.02707 1.20647 0.98678 0.94873 1.01835 1.20789 0.99078 0.92011 0.98015 1.21318 0.94989 1.00194 1.06218 1.18982 0.90089 0.87307 0.93795 1.86160 1.43042 1.18521 1.74865 1.23325 0.98881 0.83499 0.95191 1.19114 0.94034 0.89278 0.98653 1.21010 1.01860 0.95209 1.38371 0.92335 1.24982 0.94826 0.98944 0.95385 1.69980 1.10648 1.27193 1.44916 0.86442 0.79302 0.82555 0.79155 1.19635 1.20805 1.20834 0.91683 0.95800 0.91598 0.84171 0.91851 0.92425 0.92847 0.84963 0.91890 0.91931 0.92102 0.86337 0.85195 0.93147 0.93248 0.95406 0.95515 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.50 60.06 0.63 0.91 16 2 N -0.69 -8.35 5.92 -115.25 -0.68 -9.03 16 3 C 0.13 1.94 2.55 -68.86 -0.18 1.76 16 4 H 0.06 1.02 7.35 -51.93 -0.38 0.64 16 5 C -0.13 -1.85 9.40 37.15 0.35 -1.51 16 6 C -0.13 -1.98 4.94 -104.47 -0.52 -2.50 16 7 C -0.07 -0.95 8.51 -39.61 -0.34 -1.29 16 8 C -0.14 -1.76 5.88 -104.60 -0.62 -2.38 16 9 C -0.10 -0.96 10.01 36.00 0.36 -0.60 16 10 C -0.08 -1.09 9.69 -39.61 -0.38 -1.47 16 11 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 12 C 0.15 2.55 6.66 -39.22 -0.26 2.29 16 13 O -0.31 -6.35 9.27 -19.43 -0.18 -6.53 16 14 C 0.07 1.39 4.68 37.16 0.17 1.57 16 15 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 16 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.27 8.06 -51.93 -0.42 -0.15 16 26 H 0.07 0.71 7.44 -51.93 -0.39 0.32 16 27 H 0.34 3.79 7.36 -39.29 -0.29 3.50 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.70 7.45 -51.92 -0.39 0.31 16 31 H 0.13 1.51 6.98 -52.48 -0.37 1.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 37 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 38 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -29.61 336.49 -8.46 -38.08 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.70 Total: 1.51 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.69 Total: -19.67 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.05 Total: -34.66 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.18 Total: -6.53 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.61 -8.46 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037710763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.923 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds