Wall clock time and date at job start Mon Mar 30 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 110.99928 * 2 1 4 4 H 1.09002 * 109.47316 * 35.00339 * 3 2 1 5 5 C 1.52993 * 109.47069 * 274.99558 * 3 2 1 6 6 C 1.50707 * 109.46704 * 154.99936 * 3 2 1 7 7 C 1.38161 * 120.03049 * 25.23568 * 6 3 2 8 8 C 1.38250 * 120.05645 * 180.25526 * 7 6 3 9 9 C 1.50692 * 119.94292 * 179.74354 * 8 7 6 10 10 C 1.38288 * 120.10669 * 359.76010 * 8 7 6 11 11 C 1.38121 * 120.05937 * 0.02562 * 10 8 7 12 12 C 1.38715 * 120.02369 * 204.99453 * 6 3 2 13 13 O 1.35900 * 120.05747 * 0.02562 * 12 6 3 14 14 C 1.42895 * 116.99858 * 179.72465 * 13 12 6 15 15 C 1.53006 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47510 * 119.99847 * 20 18 16 23 23 H 1.48506 * 109.47246 * 239.99882 * 20 18 16 24 24 H 1.09006 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47286 * 300.00321 * 1 2 3 26 26 H 1.09002 * 109.47354 * 59.99907 * 1 2 3 27 27 H 1.00905 * 110.99563 * 123.95573 * 2 1 3 28 28 H 1.09001 * 109.47005 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.47689 * 300.00552 * 5 3 2 30 30 H 1.09008 * 109.47147 * 60.00506 * 5 3 2 31 31 H 1.08004 * 119.97211 * 359.97438 * 7 6 3 32 32 H 1.08999 * 109.47020 * 270.01345 * 9 8 7 33 33 H 1.08996 * 109.47566 * 30.02096 * 9 8 7 34 34 H 1.09003 * 109.46942 * 150.02172 * 9 8 7 35 35 H 1.08002 * 119.96782 * 179.97438 * 10 8 7 36 36 H 1.08002 * 120.02475 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.47626 * 59.99849 * 14 13 12 38 38 H 1.09001 * 109.47255 * 299.99590 * 14 13 12 39 39 H 1.09001 * 109.47002 * 299.99477 * 15 14 13 40 40 H 1.08993 * 109.46955 * 59.99914 * 15 14 13 41 41 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5895 5 6 2.0609 1.8925 -1.4370 6 6 3.3776 1.3788 0.6005 7 6 4.1525 0.2355 0.5662 8 6 5.4185 0.2402 1.1217 9 6 6.2593 -1.0099 1.0880 10 6 5.9144 1.3901 1.7083 11 6 5.1454 2.5370 1.7412 12 6 3.8748 2.5351 1.1837 13 8 3.1162 3.6622 1.2148 14 6 3.6903 4.8136 1.8366 15 6 2.6964 5.9753 1.7751 16 6 3.3021 7.1898 2.4303 17 1 4.2963 7.1381 2.8491 18 6 2.5867 8.3665 2.4961 19 7 1.3759 8.4293 1.9866 20 14 3.3371 9.8717 3.3089 21 1 4.6995 9.5419 3.7994 22 1 3.4204 10.9777 2.3215 23 1 2.4880 10.2919 4.4525 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8305 -0.5262 0.7814 28 1 2.4519 2.9100 -1.4370 29 1 2.7165 1.2516 -2.0265 30 1 1.0611 1.8872 -1.8713 31 1 3.7672 -0.6640 0.1092 32 1 6.0666 -1.6015 1.9829 33 1 6.0054 -1.5949 0.2040 34 1 7.3141 -0.7375 1.0527 35 1 6.9036 1.3911 2.1419 36 1 5.5330 3.4346 2.1999 37 1 4.6055 5.0909 1.3134 38 1 3.9212 4.5873 2.8775 39 1 2.4660 6.2016 0.7340 40 1 1.7811 5.6984 2.2980 41 1 0.8724 9.2570 2.0332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037710763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:59 Heat of formation + Delta-G solvation = -50.507954 kcal Electronic energy + Delta-G solvation = -19679.636217 eV Core-core repulsion = 16751.198399 eV Total energy + Delta-G solvation = -2928.437817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36921 -38.93347 -37.56558 -35.52140 -33.35698 -32.30708 -31.95472 -30.24119 -27.62702 -26.54849 -26.33339 -24.53402 -23.11539 -21.83592 -21.07780 -19.34447 -18.22207 -17.29604 -17.04728 -16.97651 -16.50485 -15.75392 -15.39471 -15.19049 -15.01310 -14.55678 -14.41624 -14.32417 -13.97054 -13.85028 -13.50363 -13.19924 -13.05320 -12.88754 -12.77061 -12.70088 -12.49443 -12.43807 -12.26801 -12.01774 -11.73146 -11.50588 -11.48917 -11.32708 -10.64845 -9.80520 -9.51671 -8.89234 -8.28898 -6.42742 0.36668 0.48923 1.39420 1.40248 1.53752 2.26224 2.50932 2.76691 3.05670 3.19066 3.66671 3.96697 4.03314 4.13756 4.23637 4.28896 4.36811 4.42533 4.50553 4.54001 4.62722 4.67332 4.72087 4.81356 4.89469 4.92272 4.95627 5.03007 5.13906 5.22240 5.28475 5.32552 5.39328 5.43972 5.45348 5.66776 5.69286 5.95134 6.01009 6.06643 6.39861 6.56241 6.72089 7.27680 8.84432 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.004514 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.694738 B = 6201.470821 C = 7339.718772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.682 5.682 3 C 0.136 3.864 4 H 0.029 0.971 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.070 4.070 8 C -0.129 4.129 9 C -0.103 4.103 10 C -0.084 4.084 11 C -0.219 4.219 12 C 0.105 3.895 13 O -0.335 6.335 14 C 0.085 3.915 15 C 0.031 3.969 16 C -0.546 4.546 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.976 3.024 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.090 0.910 25 H 0.014 0.986 26 H 0.063 0.937 27 H 0.347 0.653 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.126 0.874 37 H 0.057 0.943 38 H 0.057 0.943 39 H -0.002 1.002 40 H -0.004 1.004 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -19.785 -2.413 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.314 5.314 3 C 0.026 3.974 4 H 0.047 0.953 5 C -0.182 4.182 6 C -0.136 4.136 7 C -0.088 4.088 8 C -0.130 4.130 9 C -0.159 4.159 10 C -0.102 4.102 11 C -0.237 4.237 12 C 0.059 3.941 13 O -0.250 6.250 14 C 0.011 3.989 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.799 3.201 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.109 0.891 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.166 0.834 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.334 -19.708 -3.198 20.947 hybrid contribution -0.249 1.763 1.361 2.241 sum 6.086 -17.945 -1.837 19.038 Atomic orbital electron populations 1.22306 0.87018 1.02928 1.00208 1.60627 1.08533 1.12302 1.49894 1.20079 0.91112 0.89952 0.96220 0.95331 1.21632 1.02082 0.99645 0.94867 1.19412 0.98062 0.92324 1.03812 1.20950 0.92998 0.97032 0.97845 1.20182 0.95610 0.96902 1.00262 1.20732 0.98698 0.93262 1.03217 1.21129 0.99930 0.91334 0.97771 1.21432 0.94698 1.01255 1.06353 1.19320 0.91161 0.86962 0.96674 1.86084 1.44077 1.19191 1.75605 1.22827 0.97234 0.82944 0.95891 1.18933 0.94128 0.91379 0.96159 1.21422 1.02463 0.95975 1.38555 0.91222 1.26025 0.95165 1.02550 0.95814 1.70121 1.12292 1.28366 1.46189 0.85244 0.78891 0.77915 0.78052 1.18162 1.20160 1.20189 0.89093 0.96747 0.91835 0.83372 0.94296 0.91321 0.92027 0.82764 0.90372 0.90573 0.90791 0.83610 0.85618 0.92437 0.92517 0.98394 0.98528 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.50 127.69 1.34 1.85 16 2 N -0.68 -15.72 5.92 -518.53 -3.07 -18.79 16 3 C 0.14 4.06 2.55 44.17 0.11 4.17 16 4 H 0.03 1.03 7.35 -2.39 -0.02 1.01 16 5 C -0.12 -3.64 9.40 71.98 0.68 -2.96 16 6 C -0.13 -4.13 4.94 -19.77 -0.10 -4.22 16 7 C -0.07 -1.69 8.51 22.25 0.19 -1.50 16 8 C -0.13 -2.83 5.88 -19.85 -0.12 -2.95 16 9 C -0.10 -1.44 10.01 71.23 0.71 -0.73 16 10 C -0.08 -2.06 9.69 22.25 0.22 -1.85 16 11 C -0.22 -6.89 9.04 22.37 0.20 -6.68 16 12 C 0.10 3.76 6.66 22.51 0.15 3.91 16 13 O -0.34 -14.47 9.27 -92.43 -0.86 -15.33 16 14 C 0.09 3.83 4.68 71.98 0.34 4.17 16 15 C 0.03 1.73 5.34 29.85 0.16 1.89 16 16 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 17 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 20 Si 0.98 43.73 29.54 68.60 2.03 45.75 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.01 0.32 8.06 -2.39 -0.02 0.30 16 26 H 0.06 1.33 7.44 -2.39 -0.02 1.32 16 27 H 0.35 7.14 7.36 -89.69 -0.66 6.48 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.65 7.45 -2.38 -0.02 1.63 16 31 H 0.15 3.00 6.98 -2.91 -0.02 2.98 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.13 3.95 6.30 -2.91 -0.02 3.93 16 37 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 38 H 0.06 2.41 7.66 -2.39 -0.02 2.39 16 39 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -66.31 336.49 3.30 -63.01 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.34 Total: 17.20 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 4.58 Total: -35.20 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.78 Total: -75.42 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.86 Total: -15.33 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.31 3.30 -63.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037710763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.497 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds