Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09003 * 109.47098 * 34.99143 * 3 2 1 5 5 C 1.52992 * 109.47468 * 154.99558 * 3 2 1 6 6 C 1.50697 * 109.47100 * 274.99891 * 3 2 1 7 7 C 1.38166 * 120.02699 * 339.99742 * 6 3 2 8 8 C 1.38247 * 120.05751 * 179.97438 * 7 6 3 9 9 C 1.50699 * 119.94244 * 180.02562 * 8 7 6 10 10 C 1.38282 * 120.10969 * 0.02562 * 8 7 6 11 11 C 1.38116 * 120.05917 * 0.02562 * 10 8 7 12 12 C 1.38714 * 120.03161 * 159.71922 * 6 3 2 13 13 O 1.35894 * 120.05153 * 0.02562 * 12 6 3 14 14 C 1.42906 * 116.99943 * 179.97438 * 13 12 6 15 15 C 1.53001 * 109.47409 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47087 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00509 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00101 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00259 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99988 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47206 * 89.99841 * 20 18 16 22 22 H 1.48501 * 109.47345 * 209.99955 * 20 18 16 23 23 H 1.48500 * 109.47170 * 330.00090 * 20 18 16 24 24 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 27 27 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 28 28 H 1.09002 * 109.47481 * 60.00231 * 5 3 2 29 29 H 1.09006 * 109.47527 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47666 * 299.99941 * 5 3 2 31 31 H 1.08008 * 119.97377 * 359.97438 * 7 6 3 32 32 H 1.09000 * 109.47658 * 90.00148 * 9 8 7 33 33 H 1.09008 * 109.47086 * 210.00062 * 9 8 7 34 34 H 1.09005 * 109.47277 * 330.00100 * 9 8 7 35 35 H 1.08004 * 119.97120 * 179.97438 * 10 8 7 36 36 H 1.07999 * 120.03049 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46801 * 299.99785 * 14 13 12 38 38 H 1.08997 * 109.47316 * 59.99329 * 14 13 12 39 39 H 1.08996 * 109.46629 * 299.99802 * 15 14 13 40 40 H 1.08997 * 109.46830 * 59.99561 * 15 14 13 41 41 H 0.97001 * 120.00170 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0123 0.5893 5 6 3.3987 1.3791 0.6097 6 6 2.0599 1.8847 -1.4154 7 6 2.0598 0.9965 -2.4737 8 6 2.1183 1.4667 -3.7724 9 6 2.1174 0.4956 -4.9247 10 6 2.1778 2.8266 -4.0157 11 6 2.1793 3.7187 -2.9613 12 6 2.1137 3.2496 -1.6571 13 8 2.1088 4.1254 -0.6181 14 6 2.1667 5.5162 -0.9416 15 6 2.1511 6.3407 0.3471 16 6 2.2128 7.8072 0.0059 17 1 2.2581 8.1200 -1.0268 18 6 2.2103 8.7498 1.0121 19 7 2.2646 10.0297 0.7143 20 14 2.1298 8.2091 2.7983 21 1 3.5068 8.0177 3.3201 22 1 1.4369 9.2497 3.5998 23 1 1.3816 6.9300 2.8950 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.8306 -0.5261 0.7814 28 1 4.0545 0.7382 0.0203 29 1 3.7895 2.3967 0.6093 30 1 3.3521 1.0079 1.6335 31 1 2.0138 -0.0662 -2.2862 32 1 1.0908 0.3005 -5.2348 33 1 2.6743 0.9216 -5.7594 34 1 2.5866 -0.4379 -4.6137 35 1 2.2239 3.1915 -5.0312 36 1 2.2261 4.7807 -3.1519 37 1 3.0831 5.7227 -1.4945 38 1 1.3052 5.7830 -1.5537 39 1 1.2345 6.1341 0.8995 40 1 3.0124 6.0740 0.9595 41 1 2.2632 10.6928 1.4223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037710764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -29.266044 kcal Electronic energy + Delta-G solvation = -19829.228110 eV Core-core repulsion = 16901.711411 eV Total energy + Delta-G solvation = -2927.516699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09228 -37.58144 -36.55823 -33.43119 -32.12739 -31.17971 -30.53818 -29.41958 -26.36404 -24.99335 -24.78632 -23.48542 -21.69251 -20.34048 -19.84830 -17.83234 -16.61227 -16.14851 -15.53085 -15.33974 -15.10322 -14.44366 -14.31011 -13.96687 -13.85628 -13.61343 -13.25440 -13.01613 -12.66425 -12.51955 -12.20483 -12.17286 -12.01107 -11.59340 -11.52102 -11.34878 -11.19220 -11.07477 -10.72941 -10.44446 -10.18561 -9.95862 -9.79949 -9.35789 -8.64432 -8.62358 -8.52642 -7.65379 -6.15203 -4.16061 1.57328 1.69960 3.26242 3.33614 3.38506 3.81317 3.94866 4.12519 4.37016 4.82864 5.06460 5.13367 5.18888 5.20847 5.30533 5.39526 5.43227 5.46776 5.54258 5.62371 5.64555 5.83216 5.86586 5.89060 5.92580 5.93137 6.01657 6.10517 6.26249 6.30411 6.41333 6.52669 6.65357 6.81032 6.95294 7.05180 7.16874 7.21626 7.30939 7.61427 7.95015 8.37369 8.85794 9.45113 10.97424 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.004881 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.339344 B = 5735.689083 C = 6707.958680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.690 5.690 3 C 0.132 3.868 4 H 0.059 0.941 5 C -0.147 4.147 6 C -0.117 4.117 7 C -0.057 4.057 8 C -0.146 4.146 9 C -0.102 4.102 10 C -0.082 4.082 11 C -0.210 4.210 12 C 0.140 3.860 13 O -0.319 6.319 14 C 0.073 3.927 15 C -0.007 4.007 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.264 1.264 24 H 0.022 0.978 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.341 0.659 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.022 0.978 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -20.945 -5.041 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C 0.023 3.977 4 H 0.077 0.923 5 C -0.205 4.205 6 C -0.118 4.118 7 C -0.075 4.075 8 C -0.146 4.146 9 C -0.159 4.159 10 C -0.100 4.100 11 C -0.229 4.229 12 C 0.093 3.907 13 O -0.232 6.232 14 C -0.001 4.001 15 C -0.045 4.045 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.188 1.188 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.911 -20.845 -5.421 21.558 hybrid contribution -0.249 0.520 1.576 1.679 sum -1.160 -20.326 -3.844 20.718 Atomic orbital electron populations 1.22220 0.87827 1.01361 1.00808 1.60359 1.07835 1.14225 1.49632 1.20160 0.96369 0.88466 0.92709 0.92311 1.21907 0.95711 1.03319 0.99539 1.19072 1.07437 0.89612 0.95674 1.20739 0.96670 0.99909 0.90152 1.19770 1.05819 0.94099 0.94921 1.20636 1.01578 0.97795 0.95916 1.20776 0.98516 0.92480 0.98264 1.21288 1.08876 1.00737 0.91995 1.18971 0.94995 0.89607 0.87173 1.86091 1.87292 1.18238 1.31596 1.23045 1.00384 0.75632 1.01061 1.19562 0.97752 0.94795 0.92368 1.20847 1.52155 0.87880 0.95575 0.90759 1.24927 0.94124 0.94683 0.99224 1.69894 1.50156 1.00244 1.33292 0.86765 0.78810 0.78852 0.84878 1.20042 1.21164 1.18830 0.95933 0.91688 0.91585 0.84081 0.92035 0.90993 0.92796 0.84585 0.92011 0.92195 0.92023 0.86451 0.85249 0.92613 0.92673 0.95566 0.95930 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.48 60.07 0.63 0.91 16 2 N -0.69 -7.48 5.27 -115.25 -0.61 -8.09 16 3 C 0.13 1.78 2.50 -68.87 -0.17 1.61 16 4 H 0.06 0.90 7.50 -51.93 -0.39 0.51 16 5 C -0.15 -1.83 9.16 37.15 0.34 -1.49 16 6 C -0.12 -1.76 4.85 -104.47 -0.51 -2.26 16 7 C -0.06 -0.76 8.97 -39.60 -0.36 -1.12 16 8 C -0.15 -1.88 5.88 -104.60 -0.62 -2.50 16 9 C -0.10 -0.99 10.01 36.01 0.36 -0.63 16 10 C -0.08 -1.13 9.69 -39.61 -0.38 -1.52 16 11 C -0.21 -3.36 9.04 -39.43 -0.36 -3.71 16 12 C 0.14 2.39 6.66 -39.21 -0.26 2.13 16 13 O -0.32 -6.16 9.30 -19.41 -0.18 -6.34 16 14 C 0.07 1.51 4.68 37.16 0.17 1.68 16 15 C -0.01 -0.18 4.41 -27.89 -0.12 -0.30 16 16 C -0.53 -14.84 9.66 -34.45 -0.33 -15.18 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 20 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 24 H 0.02 0.23 8.06 -51.93 -0.42 -0.19 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 27 H 0.34 3.09 8.43 -39.29 -0.33 2.76 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.14 1.68 7.14 -52.48 -0.37 1.30 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 34 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 36 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 37 H 0.06 1.12 7.65 -51.93 -0.40 0.72 16 38 H 0.05 1.11 7.67 -51.93 -0.40 0.72 16 39 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 40 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -30.11 334.90 -8.12 -38.23 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.78 Total: 1.18 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.70 Total: -20.38 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.17 Total: -34.60 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.18 Total: -6.34 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.11 -8.12 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037710764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds