Wall clock time and date at job start Mon Mar 30 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09003 * 109.47098 * 34.99143 * 3 2 1 5 5 C 1.52992 * 109.47468 * 154.99558 * 3 2 1 6 6 C 1.50697 * 109.47100 * 274.99891 * 3 2 1 7 7 C 1.38166 * 120.02699 * 339.99742 * 6 3 2 8 8 C 1.38247 * 120.05751 * 179.97438 * 7 6 3 9 9 C 1.50699 * 119.94244 * 180.02562 * 8 7 6 10 10 C 1.38282 * 120.10969 * 0.02562 * 8 7 6 11 11 C 1.38116 * 120.05917 * 0.02562 * 10 8 7 12 12 C 1.38714 * 120.03161 * 159.71922 * 6 3 2 13 13 O 1.35894 * 120.05153 * 0.02562 * 12 6 3 14 14 C 1.42906 * 116.99943 * 179.97438 * 13 12 6 15 15 C 1.53001 * 109.47409 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47087 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00509 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00101 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00259 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99988 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47206 * 89.99841 * 20 18 16 22 22 H 1.48501 * 109.47345 * 209.99955 * 20 18 16 23 23 H 1.48500 * 109.47170 * 330.00090 * 20 18 16 24 24 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 27 27 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 28 28 H 1.09002 * 109.47481 * 60.00231 * 5 3 2 29 29 H 1.09006 * 109.47527 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47666 * 299.99941 * 5 3 2 31 31 H 1.08008 * 119.97377 * 359.97438 * 7 6 3 32 32 H 1.09000 * 109.47658 * 90.00148 * 9 8 7 33 33 H 1.09008 * 109.47086 * 210.00062 * 9 8 7 34 34 H 1.09005 * 109.47277 * 330.00100 * 9 8 7 35 35 H 1.08004 * 119.97120 * 179.97438 * 10 8 7 36 36 H 1.07999 * 120.03049 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46801 * 299.99785 * 14 13 12 38 38 H 1.08997 * 109.47316 * 59.99329 * 14 13 12 39 39 H 1.08996 * 109.46629 * 299.99802 * 15 14 13 40 40 H 1.08997 * 109.46830 * 59.99561 * 15 14 13 41 41 H 0.97001 * 120.00170 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0123 0.5893 5 6 3.3987 1.3791 0.6097 6 6 2.0599 1.8847 -1.4154 7 6 2.0598 0.9965 -2.4737 8 6 2.1183 1.4667 -3.7724 9 6 2.1174 0.4956 -4.9247 10 6 2.1778 2.8266 -4.0157 11 6 2.1793 3.7187 -2.9613 12 6 2.1137 3.2496 -1.6571 13 8 2.1088 4.1254 -0.6181 14 6 2.1667 5.5162 -0.9416 15 6 2.1511 6.3407 0.3471 16 6 2.2128 7.8072 0.0059 17 1 2.2581 8.1200 -1.0268 18 6 2.2103 8.7498 1.0121 19 7 2.2646 10.0297 0.7143 20 14 2.1298 8.2091 2.7983 21 1 3.5068 8.0177 3.3201 22 1 1.4369 9.2497 3.5998 23 1 1.3816 6.9300 2.8950 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.8306 -0.5261 0.7814 28 1 4.0545 0.7382 0.0203 29 1 3.7895 2.3967 0.6093 30 1 3.3521 1.0079 1.6335 31 1 2.0138 -0.0662 -2.2862 32 1 1.0908 0.3005 -5.2348 33 1 2.6743 0.9216 -5.7594 34 1 2.5866 -0.4379 -4.6137 35 1 2.2239 3.1915 -5.0312 36 1 2.2261 4.7807 -3.1519 37 1 3.0831 5.7227 -1.4945 38 1 1.3052 5.7830 -1.5537 39 1 1.2345 6.1341 0.8995 40 1 3.0124 6.0740 0.9595 41 1 2.2632 10.6928 1.4223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037710764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:01 Heat of formation + Delta-G solvation = -47.195712 kcal Electronic energy + Delta-G solvation = -19830.005599 eV Core-core repulsion = 16901.711411 eV Total energy + Delta-G solvation = -2928.294188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31822 -38.89151 -37.54786 -35.46748 -33.42663 -32.35925 -32.16722 -30.46149 -27.71515 -26.52846 -25.67847 -24.63338 -23.21597 -21.85568 -20.97938 -19.45480 -18.44108 -17.34153 -17.01906 -16.40114 -16.23975 -16.20826 -15.58571 -15.11388 -14.93695 -14.85195 -14.63467 -14.29090 -14.04761 -13.92600 -13.35204 -13.21936 -13.11224 -12.91696 -12.77304 -12.55617 -12.42750 -12.28185 -12.13934 -12.06020 -11.86177 -11.64337 -11.46096 -11.35118 -10.83984 -9.71354 -9.47706 -8.86137 -8.37377 -6.44376 0.44374 0.53227 1.33501 1.34924 1.47513 2.30716 2.36249 2.81994 2.97579 3.20434 3.78421 4.01572 4.08774 4.15822 4.19057 4.26081 4.30707 4.41154 4.54174 4.56199 4.60559 4.64226 4.67089 4.86296 4.89055 4.93958 4.98195 5.04658 5.07022 5.19133 5.25145 5.27135 5.29510 5.44324 5.47810 5.53069 5.75241 5.98959 6.06148 6.14177 6.49683 6.56167 6.61262 7.20935 8.78563 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.004881 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.339344 B = 5735.689083 C = 6707.958680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.682 5.682 3 C 0.134 3.866 4 H 0.035 0.965 5 C -0.142 4.142 6 C -0.119 4.119 7 C -0.058 4.058 8 C -0.137 4.137 9 C -0.101 4.101 10 C -0.089 4.089 11 C -0.223 4.223 12 C 0.103 3.897 13 O -0.329 6.329 14 C 0.088 3.912 15 C -0.002 4.002 16 C -0.538 4.538 17 H 0.040 0.960 18 C 0.015 3.985 19 N -0.942 5.942 20 Si 0.949 3.051 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.252 1.252 24 H 0.018 0.982 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.355 0.645 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -24.056 -4.822 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.314 5.314 3 C 0.024 3.976 4 H 0.053 0.947 5 C -0.199 4.199 6 C -0.120 4.120 7 C -0.075 4.075 8 C -0.137 4.137 9 C -0.158 4.158 10 C -0.107 4.107 11 C -0.242 4.242 12 C 0.057 3.943 13 O -0.243 6.243 14 C 0.014 3.986 15 C -0.040 4.040 16 C -0.576 4.576 17 H 0.058 0.942 18 C -0.183 4.183 19 N -0.582 5.582 20 Si 0.771 3.229 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.175 1.175 24 H 0.036 0.964 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.174 0.826 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.945 -23.987 -5.215 24.565 hybrid contribution -0.250 1.407 1.354 1.969 sum -1.195 -22.579 -3.861 22.938 Atomic orbital electron populations 1.22232 0.87323 1.02653 0.99848 1.60312 1.08245 1.12520 1.50306 1.20059 0.96572 0.89405 0.91524 0.94746 1.21847 0.95091 1.02077 1.00911 1.19342 1.06640 0.88925 0.97112 1.20974 0.96179 1.00381 0.90010 1.20219 1.03202 0.94361 0.95921 1.20710 1.02776 0.97455 0.94850 1.21067 0.98166 0.92790 0.98692 1.21383 1.09524 1.00873 0.92438 1.19273 0.97852 0.90108 0.87079 1.86016 1.88337 1.17284 1.32698 1.22610 1.00245 0.76756 0.99032 1.19401 0.97660 0.92921 0.94002 1.21112 1.51924 0.90321 0.94257 0.94152 1.25868 0.93579 0.94557 1.04305 1.70027 1.51449 1.01630 1.35093 0.85682 0.79533 0.78952 0.78687 1.18802 1.20362 1.17535 0.96363 0.89185 0.93130 0.82582 0.91143 0.93457 0.90794 0.82940 0.90742 0.90971 0.90626 0.84226 0.86168 0.92753 0.92981 0.95620 0.95510 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.48 127.69 1.34 1.87 16 2 N -0.68 -13.29 5.27 -518.54 -2.73 -16.03 16 3 C 0.13 3.49 2.50 44.17 0.11 3.60 16 4 H 0.03 1.06 7.50 -2.39 -0.02 1.05 16 5 C -0.14 -3.37 9.16 71.98 0.66 -2.71 16 6 C -0.12 -3.50 4.85 -19.77 -0.10 -3.59 16 7 C -0.06 -1.43 8.97 22.25 0.20 -1.23 16 8 C -0.14 -3.19 5.88 -19.85 -0.12 -3.31 16 9 C -0.10 -1.59 10.01 71.24 0.71 -0.88 16 10 C -0.09 -2.34 9.69 22.25 0.22 -2.12 16 11 C -0.22 -7.21 9.04 22.37 0.20 -7.01 16 12 C 0.10 3.56 6.66 22.51 0.15 3.71 16 13 O -0.33 -13.05 9.30 -92.36 -0.86 -13.91 16 14 C 0.09 3.77 4.68 71.98 0.34 4.11 16 15 C 0.00 -0.12 4.41 29.85 0.13 0.02 16 16 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 17 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 18 C 0.02 0.89 5.47 84.65 0.46 1.35 16 19 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 20 Si 0.95 44.38 27.47 68.60 1.88 46.26 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 24 H 0.02 0.35 8.06 -2.39 -0.02 0.33 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.09 8.00 -2.38 -0.02 1.07 16 27 H 0.35 5.42 8.43 -89.69 -0.76 4.67 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.35 8.08 -2.38 -0.02 1.33 16 30 H 0.07 1.42 8.12 -2.39 -0.02 1.41 16 31 H 0.15 3.28 7.14 -2.91 -0.02 3.26 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 34 H 0.07 1.01 8.08 -2.38 -0.02 0.99 16 35 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.12 3.98 6.30 -2.91 -0.02 3.96 16 37 H 0.05 2.29 7.65 -2.39 -0.02 2.27 16 38 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 39 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 40 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -66.06 334.90 3.33 -62.73 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.19 Total: 16.49 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.55 Total: -37.22 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -2.44 Total: -74.34 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.86 Total: -13.91 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -66.06 3.33 -62.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037710764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.531 kcal (2) G-P(sol) polarization free energy of solvation -66.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds