Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38138 * 120.02901 * 2 1 4 4 C 1.38273 * 120.05271 * 180.25770 * 3 2 1 5 5 C 1.50703 * 119.94118 * 179.74297 * 4 3 2 6 6 C 1.52997 * 109.47592 * 270.02416 * 5 4 3 7 7 N 1.46900 * 109.47246 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.11569 * 359.77057 * 4 3 2 9 9 C 1.38149 * 120.04928 * 359.97438 * 8 4 3 10 10 C 1.50703 * 120.02372 * 180.02562 * 9 8 4 11 11 C 1.38730 * 119.94931 * 0.02562 * 9 8 4 12 12 O 1.35896 * 120.05861 * 180.02562 * 11 9 8 13 13 C 1.42905 * 117.00039 * 89.99683 * 12 11 9 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 59.99744 * 19 17 15 21 21 H 1.48494 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47196 * 300.00241 * 19 17 15 23 23 H 1.08997 * 109.46980 * 270.25458 * 1 2 3 24 24 H 1.09006 * 109.47268 * 30.24674 * 1 2 3 25 25 H 1.08999 * 109.47428 * 150.24707 * 1 2 3 26 26 H 1.07997 * 119.97589 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47163 * 30.02680 * 5 4 3 28 28 H 1.08999 * 109.46845 * 150.02168 * 5 4 3 29 29 H 1.09006 * 109.46927 * 300.00030 * 6 5 4 30 30 H 1.08999 * 109.47228 * 59.99986 * 6 5 4 31 31 H 1.00899 * 111.00085 * 56.04142 * 7 6 5 32 32 H 1.00898 * 110.99499 * 180.02562 * 7 6 5 33 33 H 1.07989 * 119.97739 * 179.97438 * 8 4 3 34 34 H 1.09001 * 109.46901 * 269.97262 * 10 9 8 35 35 H 1.09003 * 109.47267 * 29.97904 * 10 9 8 36 36 H 1.09008 * 109.46921 * 149.97760 * 10 9 8 37 37 H 1.09000 * 109.47187 * 300.00222 * 13 12 11 38 38 H 1.09001 * 109.46558 * 60.00270 * 13 12 11 39 39 H 1.09000 * 109.47486 * 300.00062 * 14 13 12 40 40 H 1.09001 * 109.47362 * 60.00784 * 14 13 12 41 41 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1965 -0.0054 5 6 4.3326 2.5027 -0.0112 6 6 4.5809 2.9420 -1.4556 7 7 5.3141 4.2149 -1.4612 8 6 4.2752 0.0009 -0.0060 9 6 3.5885 -1.1978 -0.0007 10 6 4.3457 -2.5008 -0.0008 11 6 2.2012 -1.2012 0.0047 12 8 1.5233 -2.3790 0.0105 13 6 1.2047 -2.9380 1.2865 14 6 0.4468 -4.2528 1.0924 15 6 0.1103 -4.8420 2.4380 16 1 0.4069 -4.3297 3.3413 17 6 -0.5763 -6.0351 2.5160 18 7 -0.9379 -6.6588 1.4161 19 14 -0.9928 -6.7658 4.1840 20 1 -1.8416 -5.8131 4.9437 21 1 -1.7285 -8.0419 3.9956 22 1 0.2600 -7.0228 4.9386 23 1 -0.3633 0.0046 1.0276 24 1 -0.3634 0.8878 -0.5177 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6584 2.1313 0.0004 27 1 3.7447 3.2626 0.5036 28 1 5.2874 2.3748 0.4988 29 1 5.1689 2.1821 -1.9704 30 1 3.6262 3.0699 -1.9657 31 1 6.1739 4.1393 -0.9386 32 1 5.4900 4.5266 -2.4046 33 1 5.3551 0.0039 -0.0106 34 1 4.5239 -2.8174 -1.0285 35 1 5.3000 -2.3665 0.5088 36 1 3.7610 -3.2609 0.5174 37 1 2.1244 -3.1266 1.8404 38 1 0.5816 -2.2387 1.8440 39 1 -0.4728 -4.0638 0.5386 40 1 1.0696 -4.9523 0.5346 41 1 -1.4213 -7.4980 1.4708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037720264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = -46.823952 kcal Electronic energy + Delta-G solvation = -19406.451085 eV Core-core repulsion = 16478.173018 eV Total energy + Delta-G solvation = -2928.278067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03197 -37.47070 -35.45771 -33.39475 -33.33280 -31.97700 -30.03901 -28.13413 -26.55880 -26.40088 -24.56661 -22.71199 -21.00389 -20.78023 -20.21034 -17.41261 -16.56984 -16.16971 -15.98902 -15.31370 -14.82398 -14.35509 -14.28133 -13.85260 -13.79674 -13.63385 -12.98778 -12.91404 -12.82285 -12.39128 -12.36431 -12.26514 -11.80803 -11.60749 -11.25370 -11.20338 -11.10670 -10.92107 -10.83543 -10.52203 -10.38149 -9.58215 -9.29227 -9.10484 -9.04837 -8.43429 -8.40294 -8.07814 -6.07154 -4.11437 1.38485 1.48550 3.30018 3.34380 3.36406 3.63330 4.21501 4.33630 4.54403 4.73985 4.93264 4.97675 5.03205 5.07574 5.28906 5.33473 5.39085 5.52270 5.65428 5.70499 5.79961 5.85764 5.87242 5.91385 5.99419 6.02072 6.13365 6.18358 6.33316 6.51917 6.59668 6.64993 6.76199 6.77025 6.82843 6.98812 7.08041 7.57055 7.71307 7.88091 8.22395 8.31473 8.94455 9.52574 11.04270 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.003543 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.658424 B = 7901.773137 C = 8137.469504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.096 4.096 5 C -0.073 4.073 6 C 0.066 3.934 7 N -0.854 5.854 8 C -0.113 4.113 9 C -0.102 4.102 10 C -0.112 4.112 11 C 0.108 3.892 12 O -0.339 6.339 13 C 0.077 3.923 14 C 0.027 3.973 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.339 0.661 32 H 0.341 0.659 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.101 17.332 -4.654 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.097 4.097 5 C -0.111 4.111 6 C -0.065 4.065 7 N -0.383 5.383 8 C -0.131 4.131 9 C -0.103 4.103 10 C -0.168 4.168 11 C 0.064 3.936 12 O -0.257 6.257 13 C 0.004 3.996 14 C -0.010 4.010 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.139 0.861 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.291 17.337 -4.494 20.656 hybrid contribution 0.560 -0.928 0.559 1.219 sum 10.851 16.410 -3.935 20.062 Atomic orbital electron populations 1.20703 0.90661 1.03025 1.02516 1.20256 0.96850 0.92436 1.00656 1.20735 0.93263 0.97007 1.01844 1.19639 0.93637 0.94404 1.02010 1.20477 1.00002 0.94063 0.96511 1.21791 0.98696 0.89433 0.96583 1.58723 1.28022 1.31469 1.20110 1.20700 0.99133 0.91048 1.02203 1.20243 0.93312 0.95934 1.00788 1.20713 0.99148 0.94485 1.02479 1.18537 0.89495 0.86217 0.99358 1.86051 1.74080 1.33653 1.31877 1.23163 0.98139 0.96835 0.81421 1.19087 0.95380 0.88792 0.97712 1.20968 1.36969 1.06510 0.91907 0.92560 1.24980 0.95597 0.96807 0.96766 1.69966 1.38875 1.16905 1.27124 0.86576 0.78606 0.78429 0.83931 1.20122 1.21137 1.20127 0.91259 0.91933 0.90385 0.86095 0.90364 0.91447 0.95333 0.90796 0.84878 0.84630 0.86368 0.91191 0.92065 0.90520 0.94235 0.94236 0.95581 0.95602 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.79 36.01 0.35 -1.29 16 2 C -0.10 -1.60 5.89 -104.48 -0.62 -2.21 16 3 C -0.11 -1.47 9.35 -39.60 -0.37 -1.84 16 4 C -0.10 -1.18 5.14 -104.60 -0.54 -1.72 16 5 C -0.07 -0.70 5.60 -27.88 -0.16 -0.85 16 6 C 0.07 0.57 6.77 -3.83 -0.03 0.55 16 7 N -0.85 -6.34 9.62 -10.37 -0.10 -6.44 16 8 C -0.11 -1.48 9.35 -39.61 -0.37 -1.85 16 9 C -0.10 -1.60 5.89 -104.47 -0.62 -2.22 16 10 C -0.11 -1.63 9.79 36.01 0.35 -1.27 16 11 C 0.11 1.92 5.67 -39.22 -0.22 1.70 16 12 O -0.34 -7.02 8.32 -19.41 -0.16 -7.18 16 13 C 0.08 1.71 5.63 37.16 0.21 1.91 16 14 C 0.03 0.73 5.34 -27.88 -0.15 0.58 16 15 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.34 2.07 8.99 -39.29 -0.35 1.72 16 32 H 0.34 2.01 9.08 -39.29 -0.36 1.66 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.08 1.28 6.33 -51.92 -0.33 0.95 16 37 H 0.04 0.85 7.26 -51.93 -0.38 0.47 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -30.61 341.56 -8.79 -39.40 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.83 Total: 0.58 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.56 Total: -22.02 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.64 Total: -32.36 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.16 Total: -7.18 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.61 -8.79 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037720264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.426 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds