Wall clock time and date at job start Mon Mar 30 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38138 * 120.02901 * 2 1 4 4 C 1.38273 * 120.05271 * 180.25770 * 3 2 1 5 5 C 1.50703 * 119.94118 * 179.74297 * 4 3 2 6 6 C 1.52997 * 109.47592 * 270.02416 * 5 4 3 7 7 N 1.46900 * 109.47246 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.11569 * 359.77057 * 4 3 2 9 9 C 1.38149 * 120.04928 * 359.97438 * 8 4 3 10 10 C 1.50703 * 120.02372 * 180.02562 * 9 8 4 11 11 C 1.38730 * 119.94931 * 0.02562 * 9 8 4 12 12 O 1.35896 * 120.05861 * 180.02562 * 11 9 8 13 13 C 1.42905 * 117.00039 * 89.99683 * 12 11 9 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 59.99744 * 19 17 15 21 21 H 1.48494 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47196 * 300.00241 * 19 17 15 23 23 H 1.08997 * 109.46980 * 270.25458 * 1 2 3 24 24 H 1.09006 * 109.47268 * 30.24674 * 1 2 3 25 25 H 1.08999 * 109.47428 * 150.24707 * 1 2 3 26 26 H 1.07997 * 119.97589 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47163 * 30.02680 * 5 4 3 28 28 H 1.08999 * 109.46845 * 150.02168 * 5 4 3 29 29 H 1.09006 * 109.46927 * 300.00030 * 6 5 4 30 30 H 1.08999 * 109.47228 * 59.99986 * 6 5 4 31 31 H 1.00899 * 111.00085 * 56.04142 * 7 6 5 32 32 H 1.00898 * 110.99499 * 180.02562 * 7 6 5 33 33 H 1.07989 * 119.97739 * 179.97438 * 8 4 3 34 34 H 1.09001 * 109.46901 * 269.97262 * 10 9 8 35 35 H 1.09003 * 109.47267 * 29.97904 * 10 9 8 36 36 H 1.09008 * 109.46921 * 149.97760 * 10 9 8 37 37 H 1.09000 * 109.47187 * 300.00222 * 13 12 11 38 38 H 1.09001 * 109.46558 * 60.00270 * 13 12 11 39 39 H 1.09000 * 109.47486 * 300.00062 * 14 13 12 40 40 H 1.09001 * 109.47362 * 60.00784 * 14 13 12 41 41 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1965 -0.0054 5 6 4.3326 2.5027 -0.0112 6 6 4.5809 2.9420 -1.4556 7 7 5.3141 4.2149 -1.4612 8 6 4.2752 0.0009 -0.0060 9 6 3.5885 -1.1978 -0.0007 10 6 4.3457 -2.5008 -0.0008 11 6 2.2012 -1.2012 0.0047 12 8 1.5233 -2.3790 0.0105 13 6 1.2047 -2.9380 1.2865 14 6 0.4468 -4.2528 1.0924 15 6 0.1103 -4.8420 2.4380 16 1 0.4069 -4.3297 3.3413 17 6 -0.5763 -6.0351 2.5160 18 7 -0.9379 -6.6588 1.4161 19 14 -0.9928 -6.7658 4.1840 20 1 -1.8416 -5.8131 4.9437 21 1 -1.7285 -8.0419 3.9956 22 1 0.2600 -7.0228 4.9386 23 1 -0.3633 0.0046 1.0276 24 1 -0.3634 0.8878 -0.5177 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6584 2.1313 0.0004 27 1 3.7447 3.2626 0.5036 28 1 5.2874 2.3748 0.4988 29 1 5.1689 2.1821 -1.9704 30 1 3.6262 3.0699 -1.9657 31 1 6.1739 4.1393 -0.9386 32 1 5.4900 4.5266 -2.4046 33 1 5.3551 0.0039 -0.0106 34 1 4.5239 -2.8174 -1.0285 35 1 5.3000 -2.3665 0.5088 36 1 3.7610 -3.2609 0.5174 37 1 2.1244 -3.1266 1.8404 38 1 0.5816 -2.2387 1.8440 39 1 -0.4728 -4.0638 0.5386 40 1 1.0696 -4.9523 0.5346 41 1 -1.4213 -7.4980 1.4708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037720264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:13 Heat of formation + Delta-G solvation = -65.335703 kcal Electronic energy + Delta-G solvation = -19407.253815 eV Core-core repulsion = 16478.173018 eV Total energy + Delta-G solvation = -2929.080797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25531 -38.78585 -36.33857 -35.39008 -34.53866 -33.08796 -31.95192 -29.09057 -27.77256 -27.65435 -26.39547 -23.58387 -22.96502 -21.92421 -21.25796 -19.03981 -17.99899 -17.75557 -16.82974 -16.67623 -16.12096 -15.95710 -15.58707 -14.99154 -14.90909 -14.63378 -14.34704 -14.24096 -14.09051 -13.88243 -13.48180 -13.32364 -13.17069 -13.11655 -12.86392 -12.68391 -12.54406 -12.22430 -12.11474 -11.95155 -11.82664 -11.51847 -11.43261 -10.76785 -10.54358 -9.63093 -9.53209 -9.27517 -8.26157 -6.40097 0.20787 0.37235 1.39585 1.43499 1.51659 2.32989 2.49531 3.07468 3.08124 3.55969 3.80629 3.82983 4.09263 4.21090 4.27788 4.31816 4.36287 4.36748 4.48496 4.51614 4.60844 4.70814 4.72736 4.74329 4.77529 4.83480 4.86329 5.02684 5.14319 5.20340 5.33780 5.34589 5.46116 5.50281 5.62396 5.67385 5.69530 5.92218 6.09853 6.22661 6.61735 6.71592 6.76080 7.29887 8.86442 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.003543 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.658424 B = 7901.773137 C = 8137.469504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.113 4.113 3 C -0.111 4.111 4 C -0.082 4.082 5 C -0.067 4.067 6 C 0.070 3.930 7 N -0.858 5.858 8 C -0.111 4.111 9 C -0.113 4.113 10 C -0.110 4.110 11 C 0.061 3.939 12 O -0.355 6.355 13 C 0.098 3.902 14 C 0.034 3.966 15 C -0.547 4.547 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.974 3.026 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.264 1.264 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.348 0.652 32 H 0.351 0.649 33 H 0.147 0.853 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.042 0.958 39 H -0.004 1.004 40 H -0.003 1.003 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.602 19.508 -3.509 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.083 4.083 5 C -0.105 4.105 6 C -0.061 4.061 7 N -0.389 5.389 8 C -0.128 4.128 9 C -0.113 4.113 10 C -0.167 4.167 11 C 0.018 3.982 12 O -0.273 6.273 13 C 0.024 3.976 14 C -0.003 4.003 15 C -0.585 4.585 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.164 0.836 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.811 19.540 -3.360 23.078 hybrid contribution 0.169 -1.474 0.108 1.488 sum 11.980 18.066 -3.251 21.920 Atomic orbital electron populations 1.20688 0.90501 1.03036 1.02469 1.20436 0.97294 0.92707 1.00866 1.21023 0.93966 0.96891 1.00962 1.20009 0.93469 0.95521 0.99305 1.20487 1.00366 0.92343 0.97308 1.21673 0.98608 0.90068 0.95764 1.58685 1.28611 1.30587 1.21037 1.21005 1.00564 0.90182 1.01091 1.20440 0.92656 0.97338 1.00896 1.20707 0.99804 0.93410 1.02729 1.18905 0.90587 0.85587 1.03155 1.86011 1.74918 1.35568 1.30784 1.22651 0.97588 0.94800 0.82523 1.18898 0.94051 0.90665 0.96696 1.21370 1.37304 1.07170 0.92640 0.91628 1.26018 0.95130 0.97161 1.01222 1.70111 1.39550 1.17440 1.29859 0.85374 0.78819 0.77615 0.78498 1.18897 1.20585 1.18870 0.91360 0.89076 0.93127 0.83646 0.89968 0.89882 0.95322 0.91595 0.83887 0.83617 0.83485 0.90739 0.89288 0.93544 0.93880 0.93982 0.98522 0.98507 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.25 9.79 71.24 0.70 -2.55 16 2 C -0.11 -3.50 5.89 -19.77 -0.12 -3.62 16 3 C -0.11 -2.70 9.35 22.25 0.21 -2.49 16 4 C -0.08 -1.79 5.14 -19.85 -0.10 -1.89 16 5 C -0.07 -1.04 5.60 29.85 0.17 -0.87 16 6 C 0.07 1.00 6.77 86.30 0.58 1.59 16 7 N -0.86 -10.08 9.62 -186.72 -1.80 -11.87 16 8 C -0.11 -2.63 9.35 22.25 0.21 -2.42 16 9 C -0.11 -3.47 5.89 -19.77 -0.12 -3.59 16 10 C -0.11 -3.19 9.79 71.24 0.70 -2.49 16 11 C 0.06 2.21 5.67 22.51 0.13 2.34 16 12 O -0.35 -15.53 8.32 -92.39 -0.77 -16.30 16 13 C 0.10 4.53 5.63 71.98 0.41 4.94 16 14 C 0.03 1.92 5.34 29.85 0.16 2.08 16 15 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 19 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.09 2.08 8.09 -2.38 -0.02 2.06 16 25 H 0.05 1.74 7.53 -2.39 -0.02 1.73 16 26 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.08 1.07 8.08 -2.39 -0.02 1.06 16 29 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.35 3.09 8.99 -89.69 -0.81 2.28 16 32 H 0.35 3.16 9.08 -89.70 -0.81 2.35 16 33 H 0.15 2.61 8.06 -2.92 -0.02 2.59 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 36 H 0.05 1.61 6.33 -2.38 -0.02 1.60 16 37 H 0.04 1.93 7.26 -2.39 -0.02 1.91 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -68.24 341.56 2.76 -65.48 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -0.60 Total: 13.43 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.62 Total: -39.81 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.51 Total: -68.97 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.77 Total: -16.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.24 2.76 -65.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037720264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.147 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds