Wall clock time and date at job start Mon Mar 30 2020 07:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47551 * 2 1 4 4 C 1.53004 * 109.47102 * 239.99667 * 2 1 3 5 5 C 1.53006 * 109.46761 * 120.00420 * 2 1 3 6 6 N 1.46889 * 109.47479 * 59.99766 * 5 2 1 7 7 C 1.46906 * 111.00093 * 179.97438 * 6 5 2 8 8 C 1.50704 * 109.47201 * 179.97438 * 7 6 5 9 9 C 1.38118 * 120.03734 * 260.00304 * 8 7 6 10 10 C 1.38277 * 120.06929 * 179.97438 * 9 8 7 11 11 C 1.38323 * 120.13740 * 359.95509 * 10 9 8 12 12 C 1.38076 * 120.07184 * 0.02690 * 11 10 9 13 13 C 1.38854 * 120.03196 * 79.95734 * 8 7 6 14 14 O 1.35751 * 120.07037 * 0.04630 * 13 8 7 15 15 C 1.34834 * 117.00048 * 174.38861 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.07801 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.08430 * 15 14 13 18 18 N 1.31553 * 119.99590 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00134 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00762 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00151 * 19 17 15 22 22 H 1.48492 * 109.47289 * 330.00491 * 19 17 15 23 23 H 1.09007 * 109.46698 * 299.99748 * 1 2 3 24 24 H 1.08993 * 109.46847 * 59.99556 * 1 2 3 25 25 H 1.08998 * 109.47567 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47642 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47241 * 300.00189 * 3 2 1 28 28 H 1.09003 * 109.46983 * 59.99864 * 3 2 1 29 29 H 1.08998 * 109.47030 * 300.00477 * 4 2 1 30 30 H 1.08999 * 109.46375 * 60.00001 * 4 2 1 31 31 H 1.08998 * 109.47181 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46863 * 299.99163 * 5 2 1 33 33 H 1.09005 * 109.46675 * 180.02562 * 5 2 1 34 34 H 1.00903 * 111.00470 * 56.04758 * 6 5 2 35 35 H 1.09003 * 109.46903 * 59.99940 * 7 6 5 36 36 H 1.08994 * 109.47094 * 299.99934 * 7 6 5 37 37 H 1.07999 * 119.96398 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.93305 * 179.97438 * 10 9 8 39 39 H 1.08001 * 119.96315 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.03381 * 179.72713 * 12 11 10 41 41 H 0.97008 * 120.00232 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7214 1.2493 6 7 1.5503 -2.1062 1.2492 7 6 2.0217 -2.8314 2.4367 8 6 1.5000 -4.2448 2.4022 9 6 0.3958 -4.5928 3.1553 10 6 -0.0837 -5.8894 3.1237 11 6 0.5398 -6.8415 2.3376 12 6 1.6438 -6.4998 1.5820 13 6 2.1284 -5.1985 1.6124 14 8 3.2140 -4.8596 0.8710 15 6 3.8453 -5.8566 0.2188 16 1 3.4356 -6.8557 0.2332 17 6 5.0206 -5.5990 -0.4703 18 7 5.6369 -6.5719 -1.1062 19 14 5.7289 -3.8707 -0.4957 20 1 6.6561 -3.6989 0.6516 21 1 6.4683 -3.6573 -1.7658 22 1 4.6257 -2.8821 -0.3930 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7210 1.2495 34 1 1.8197 -2.5851 0.4029 35 1 1.6586 -2.3323 3.3351 36 1 3.1116 -2.8461 2.4445 37 1 -0.0935 -3.8515 3.7696 38 1 -0.9471 -6.1592 3.7139 39 1 0.1626 -7.8532 2.3147 40 1 2.1328 -7.2448 0.9719 41 1 6.4590 -6.3917 -1.5886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040492899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:25 Heat of formation + Delta-G solvation = -20.761846 kcal Electronic energy + Delta-G solvation = -20347.647061 eV Core-core repulsion = 17420.499132 eV Total energy + Delta-G solvation = -2927.147929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.37854 -37.94011 -36.56041 -34.24671 -32.39786 -30.49048 -29.11077 -27.21831 -27.05094 -25.97263 -25.22143 -23.19702 -21.50689 -20.54693 -18.67306 -17.84715 -17.10646 -15.83437 -15.07092 -14.83329 -14.65317 -14.55173 -14.03840 -13.74901 -13.68293 -13.61034 -13.09928 -12.64748 -12.41355 -12.25376 -12.16857 -12.01626 -11.76808 -11.49293 -11.42803 -11.34049 -10.84183 -10.81553 -10.70938 -10.51216 -10.50106 -10.39885 -10.11491 -9.38984 -8.90998 -8.22975 -7.92855 -7.34979 -6.44361 -4.10857 2.07675 2.29696 3.16298 3.20478 3.31620 4.17999 4.37875 4.74107 4.82374 4.91571 4.97730 5.07334 5.19681 5.46161 5.52333 5.61054 5.65355 5.70834 5.80572 5.83080 5.89696 5.91480 5.94891 5.98069 6.02065 6.15685 6.18203 6.21851 6.32337 6.37594 6.52363 6.59183 6.60658 6.80435 7.16099 7.19128 7.32306 7.42576 7.61778 7.76454 7.83084 8.03010 8.91219 9.53087 10.63626 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.008695 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.221635 B = 3219.380078 C = 5009.939956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.147 4.147 5 C 0.067 3.933 6 N -0.682 5.682 7 C 0.116 3.884 8 C -0.155 4.155 9 C -0.061 4.061 10 C -0.206 4.206 11 C -0.077 4.077 12 C -0.221 4.221 13 C 0.164 3.836 14 O -0.217 6.217 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.065 3.935 18 N -0.880 5.880 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.259 1.259 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.349 0.651 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 10.728 3.980 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.205 4.205 5 C -0.062 4.062 6 N -0.315 5.315 7 C -0.012 4.012 8 C -0.157 4.157 9 C -0.080 4.080 10 C -0.225 4.225 11 C -0.095 4.095 12 C -0.240 4.240 13 C 0.112 3.888 14 O -0.123 6.123 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.138 4.138 18 N -0.518 5.518 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.184 1.184 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.152 11.049 4.067 14.320 hybrid contribution 1.421 0.229 -0.361 1.484 sum -6.731 11.278 3.705 13.646 Atomic orbital electron populations 1.21722 0.93895 1.02769 1.00254 1.20564 0.96527 0.94666 0.95120 1.21847 1.00810 0.95613 1.01472 1.21923 1.00860 1.00953 0.96713 1.21977 0.96699 0.90129 0.97408 1.60703 1.62974 1.01897 1.05928 1.20511 0.97081 0.90368 0.93229 1.18842 0.99887 0.94255 1.02727 1.20527 0.94203 0.95717 0.97579 1.20655 1.02836 0.94024 1.04951 1.20811 0.94924 0.98338 0.95428 1.21267 1.00187 0.97096 1.05456 1.18951 0.87616 0.92366 0.89916 1.83540 1.36711 1.36810 1.55207 1.20746 1.06231 0.90274 1.29078 0.87668 1.24425 0.95041 0.98975 0.95396 1.69640 1.18157 1.31893 1.32083 0.86249 0.79578 0.83819 0.77596 1.20102 1.20830 1.18356 0.93306 0.93794 0.91172 0.92933 0.92674 0.92810 0.91789 0.92789 0.92976 0.91479 0.95661 0.83076 0.91393 0.94655 0.86927 0.87520 0.87347 0.85031 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.32 37.16 0.31 -1.27 16 2 C -0.07 -0.89 0.85 -154.51 -0.13 -1.02 16 3 C -0.14 -1.53 8.47 37.15 0.31 -1.21 16 4 C -0.15 -2.08 8.14 37.16 0.30 -1.78 16 5 C 0.07 0.99 4.65 -3.83 -0.02 0.97 16 6 N -0.68 -11.55 5.70 -115.06 -0.66 -12.20 16 7 C 0.12 2.06 5.48 -4.97 -0.03 2.04 16 8 C -0.16 -3.03 5.41 -104.44 -0.56 -3.60 16 9 C -0.06 -1.06 9.66 -39.61 -0.38 -1.44 16 10 C -0.21 -3.47 10.04 -39.54 -0.40 -3.87 16 11 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 12 C -0.22 -4.75 9.17 -39.40 -0.36 -5.11 16 13 C 0.16 3.69 6.62 -39.11 -0.26 3.44 16 14 O -0.22 -5.48 7.78 0.03 0.00 -5.48 16 15 C -0.39 -10.66 9.95 30.89 0.31 -10.36 16 16 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 17 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 18 N -0.88 -25.18 13.96 55.48 0.77 -24.40 16 19 Si 0.90 21.33 28.62 -169.99 -4.86 16.47 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.97 7.60 -51.93 -0.39 0.58 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.00 6.57 -51.93 -0.34 0.66 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.35 6.65 6.71 -39.29 -0.26 6.38 16 35 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 36 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 37 H 0.11 1.65 8.04 -52.49 -0.42 1.23 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.97 5.64 -52.49 -0.30 2.68 16 41 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -27.80 333.23 -7.74 -35.53 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.61 Total: 8.39 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -1.40 Total: -23.33 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.12 Total: -36.61 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: 0.00 Total: -5.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.80 -7.74 -35.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040492899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.770 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds