Wall clock time and date at job start Mon Mar 30 2020 07:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47551 * 2 1 4 4 C 1.53004 * 109.47102 * 239.99667 * 2 1 3 5 5 C 1.53006 * 109.46761 * 120.00420 * 2 1 3 6 6 N 1.46889 * 109.47479 * 59.99766 * 5 2 1 7 7 C 1.46906 * 111.00093 * 179.97438 * 6 5 2 8 8 C 1.50704 * 109.47201 * 179.97438 * 7 6 5 9 9 C 1.38118 * 120.03734 * 260.00304 * 8 7 6 10 10 C 1.38277 * 120.06929 * 179.97438 * 9 8 7 11 11 C 1.38323 * 120.13740 * 359.95509 * 10 9 8 12 12 C 1.38076 * 120.07184 * 0.02690 * 11 10 9 13 13 C 1.38854 * 120.03196 * 79.95734 * 8 7 6 14 14 O 1.35751 * 120.07037 * 0.04630 * 13 8 7 15 15 C 1.34834 * 117.00048 * 174.38861 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.07801 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.08430 * 15 14 13 18 18 N 1.31553 * 119.99590 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00134 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00762 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00151 * 19 17 15 22 22 H 1.48492 * 109.47289 * 330.00491 * 19 17 15 23 23 H 1.09007 * 109.46698 * 299.99748 * 1 2 3 24 24 H 1.08993 * 109.46847 * 59.99556 * 1 2 3 25 25 H 1.08998 * 109.47567 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47642 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47241 * 300.00189 * 3 2 1 28 28 H 1.09003 * 109.46983 * 59.99864 * 3 2 1 29 29 H 1.08998 * 109.47030 * 300.00477 * 4 2 1 30 30 H 1.08999 * 109.46375 * 60.00001 * 4 2 1 31 31 H 1.08998 * 109.47181 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46863 * 299.99163 * 5 2 1 33 33 H 1.09005 * 109.46675 * 180.02562 * 5 2 1 34 34 H 1.00903 * 111.00470 * 56.04758 * 6 5 2 35 35 H 1.09003 * 109.46903 * 59.99940 * 7 6 5 36 36 H 1.08994 * 109.47094 * 299.99934 * 7 6 5 37 37 H 1.07999 * 119.96398 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.93305 * 179.97438 * 10 9 8 39 39 H 1.08001 * 119.96315 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.03381 * 179.72713 * 12 11 10 41 41 H 0.97008 * 120.00232 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7214 1.2493 6 7 1.5503 -2.1062 1.2492 7 6 2.0217 -2.8314 2.4367 8 6 1.5000 -4.2448 2.4022 9 6 0.3958 -4.5928 3.1553 10 6 -0.0837 -5.8894 3.1237 11 6 0.5398 -6.8415 2.3376 12 6 1.6438 -6.4998 1.5820 13 6 2.1284 -5.1985 1.6124 14 8 3.2140 -4.8596 0.8710 15 6 3.8453 -5.8566 0.2188 16 1 3.4356 -6.8557 0.2332 17 6 5.0206 -5.5990 -0.4703 18 7 5.6369 -6.5719 -1.1062 19 14 5.7289 -3.8707 -0.4957 20 1 6.6561 -3.6989 0.6516 21 1 6.4683 -3.6573 -1.7658 22 1 4.6257 -2.8821 -0.3930 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7210 1.2495 34 1 1.8197 -2.5851 0.4029 35 1 1.6586 -2.3323 3.3351 36 1 3.1116 -2.8461 2.4445 37 1 -0.0935 -3.8515 3.7696 38 1 -0.9471 -6.1592 3.7139 39 1 0.1626 -7.8532 2.3147 40 1 2.1328 -7.2448 0.9719 41 1 6.4590 -6.3917 -1.5886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040492899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:24 Heat of formation + Delta-G solvation = -36.456602 kcal Electronic energy + Delta-G solvation = -20348.327637 eV Core-core repulsion = 17420.499132 eV Total energy + Delta-G solvation = -2927.828505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01875 -39.10278 -38.21135 -35.54164 -34.44481 -31.92342 -30.70329 -28.23448 -28.01740 -27.52891 -26.95439 -24.48198 -23.17639 -22.06673 -19.82614 -19.68319 -18.84843 -17.18688 -16.76461 -16.17805 -16.02373 -15.96162 -15.48022 -15.41308 -15.27532 -14.81343 -14.37260 -14.29499 -14.08815 -13.89230 -13.31867 -13.13716 -13.02362 -12.92983 -12.58200 -12.54269 -12.51642 -12.40085 -12.16680 -12.00513 -11.60303 -11.54176 -11.45526 -11.18063 -10.94034 -9.70840 -9.32998 -9.00174 -8.51924 -6.22559 0.55242 0.73274 1.24796 1.28211 1.43495 2.21832 2.76327 3.03929 3.11881 3.50140 3.84334 3.93712 4.03899 4.05949 4.11954 4.32852 4.46749 4.55094 4.60790 4.67232 4.69640 4.71680 4.82196 4.86553 4.88487 4.93404 5.03816 5.09252 5.10267 5.22873 5.29118 5.33564 5.45815 5.46211 5.61630 5.65616 5.78143 5.81353 5.90596 6.12110 6.30045 6.35454 6.83650 7.59026 8.60118 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.008695 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.221635 B = 3219.380078 C = 5009.939956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.147 4.147 5 C 0.066 3.934 6 N -0.679 5.679 7 C 0.118 3.882 8 C -0.155 4.155 9 C -0.059 4.059 10 C -0.183 4.183 11 C -0.080 4.080 12 C -0.244 4.244 13 C 0.125 3.875 14 O -0.237 6.237 15 C -0.392 4.392 16 H 0.079 0.921 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.271 1.271 22 H -0.258 1.258 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.333 0.667 35 H 0.099 0.901 36 H 0.010 0.990 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 13.141 5.884 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.205 4.205 5 C -0.063 4.063 6 N -0.310 5.310 7 C -0.010 4.010 8 C -0.156 4.156 9 C -0.077 4.077 10 C -0.201 4.201 11 C -0.098 4.098 12 C -0.263 4.263 13 C 0.076 3.924 14 O -0.145 6.145 15 C -0.469 4.469 16 H 0.097 0.903 17 C -0.185 4.185 18 N -0.565 5.565 19 Si 0.786 3.214 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.182 1.182 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.028 0.972 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.029 0.971 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.565 13.468 6.002 18.139 hybrid contribution 1.886 -0.593 -0.774 2.123 sum -8.680 12.875 5.229 16.384 Atomic orbital electron populations 1.21653 0.93019 1.01832 1.01502 1.20588 0.97152 0.95589 0.93423 1.21807 1.00564 0.94082 1.02826 1.21932 0.99935 1.00143 0.98489 1.22109 0.95901 0.89088 0.99225 1.60781 1.62655 1.02741 1.04856 1.20560 0.95709 0.89970 0.94798 1.19229 1.00082 0.94532 1.01782 1.21026 0.93003 0.96929 0.96731 1.21205 1.02756 0.93175 1.02977 1.21154 0.93653 1.00360 0.94648 1.21313 1.01849 0.96520 1.06596 1.19495 0.87730 0.93863 0.91313 1.83500 1.38287 1.35764 1.56910 1.20669 1.06637 0.90050 1.29511 0.90334 1.25159 0.95398 1.02647 0.95271 1.69727 1.19128 1.33784 1.33874 0.85323 0.78760 0.79307 0.77977 1.19763 1.19561 1.18246 0.92101 0.92503 0.93145 0.93364 0.91441 0.91357 0.94031 0.91058 0.94379 0.89529 0.97184 0.84864 0.88274 0.97134 0.83000 0.83165 0.84581 0.87716 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.32 71.98 0.60 -2.10 16 2 C -0.07 -1.62 0.85 -52.18 -0.04 -1.66 16 3 C -0.14 -2.58 8.47 71.98 0.61 -1.97 16 4 C -0.15 -4.11 8.14 71.98 0.59 -3.52 16 5 C 0.07 1.82 4.65 86.31 0.40 2.22 16 6 N -0.68 -22.37 5.70 -517.93 -2.95 -25.32 16 7 C 0.12 4.03 5.48 85.56 0.47 4.50 16 8 C -0.15 -5.84 5.41 -19.74 -0.11 -5.94 16 9 C -0.06 -1.78 9.66 22.25 0.22 -1.57 16 10 C -0.18 -5.36 10.04 22.30 0.22 -5.14 16 11 C -0.08 -2.76 10.04 22.25 0.22 -2.54 16 12 C -0.24 -10.79 9.17 22.39 0.21 -10.59 16 13 C 0.13 5.80 6.62 22.58 0.15 5.95 16 14 O -0.24 -12.55 7.78 -22.80 -0.18 -12.73 16 15 C -0.39 -22.98 9.95 67.92 0.68 -22.30 16 16 H 0.08 4.87 5.44 -2.91 -0.02 4.86 16 17 C 0.01 0.78 5.49 84.83 0.47 1.24 16 18 N -0.92 -55.54 13.96 21.61 0.30 -55.23 16 19 Si 0.96 45.77 28.62 68.60 1.96 47.73 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 23 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.31 7.60 -2.39 -0.02 1.29 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 1.33 6.57 -2.39 -0.02 1.31 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.33 12.92 6.71 -89.69 -0.60 12.32 16 35 H 0.10 2.72 8.00 -2.39 -0.02 2.71 16 36 H 0.01 0.41 7.86 -2.39 -0.02 0.39 16 37 H 0.15 3.51 8.04 -2.91 -0.02 3.49 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.10 5.13 5.64 -2.91 -0.02 5.12 16 41 H 0.28 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -63.97 333.23 4.21 -59.76 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.40 Total: 29.22 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 4.67 Total: -43.43 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.65 Total: -80.56 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.18 Total: -12.73 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.96 Total: 47.73 kcal Total: -63.97 4.21 -59.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040492899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.305 kcal (2) G-P(sol) polarization free energy of solvation -63.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds