Wall clock time and date at job start Mon Mar 30 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94508 * 2 1 4 4 C 1.38149 * 120.05411 * 179.70262 * 3 2 1 5 5 C 1.38726 * 119.94477 * 0.28574 * 4 3 2 6 6 O 1.35900 * 120.05752 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47411 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47524 * 175.00187 * 8 7 6 10 10 C 1.52998 * 109.46876 * 54.99693 * 8 7 6 11 11 N 1.46898 * 109.47155 * 295.00149 * 8 7 6 12 12 C 1.46900 * 111.00292 * 204.99580 * 11 8 7 13 13 H 1.08993 * 109.47031 * 325.00384 * 12 11 8 14 14 C 1.53008 * 109.46768 * 84.99934 * 12 11 8 15 15 C 1.50699 * 109.47253 * 204.99813 * 12 11 8 16 16 H 1.07998 * 120.00210 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99796 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99896 * 179.97438 * 17 15 12 19 19 Si 1.86800 * 120.00011 * 0.02562 * 17 15 12 20 20 H 1.48502 * 109.46966 * 89.99561 * 19 17 15 21 21 H 1.48501 * 109.46957 * 209.99524 * 19 17 15 22 22 H 1.48501 * 109.47152 * 329.99902 * 19 17 15 23 23 C 1.38729 * 119.89044 * 359.97438 * 5 4 3 24 24 C 1.38144 * 119.94142 * 0.02562 * 23 5 4 25 25 H 1.09002 * 109.47294 * 89.99406 * 1 2 3 26 26 H 1.08996 * 109.47057 * 209.99743 * 1 2 3 27 27 H 1.09005 * 109.46844 * 329.99277 * 1 2 3 28 28 H 1.08002 * 119.97497 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.02723 * 180.30253 * 4 3 2 30 30 H 1.08997 * 109.47423 * 299.99641 * 7 6 5 31 31 H 1.08995 * 109.47128 * 59.99997 * 7 6 5 32 32 H 1.09004 * 109.47274 * 60.00760 * 10 8 7 33 33 H 1.09010 * 109.47310 * 179.97438 * 10 8 7 34 34 H 1.09001 * 109.47721 * 300.00066 * 10 8 7 35 35 H 1.00904 * 111.00259 * 328.95511 * 11 8 7 36 36 H 1.08993 * 109.46977 * 60.00417 * 14 12 11 37 37 H 1.09000 * 109.46978 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.46961 * 300.00169 * 14 12 11 39 39 H 0.96999 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.08007 * 120.02953 * 179.97438 * 23 5 4 41 41 H 1.08007 * 119.97030 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.2734 0.0000 0.0064 6 8 5.6324 -0.0001 0.0131 7 6 6.2811 -1.2733 0.0135 8 6 7.7979 -1.0730 0.0207 9 1 8.2919 -2.0405 0.1105 10 6 8.1898 -0.1882 1.2057 11 7 8.2123 -0.4261 -1.2314 12 6 9.6137 -0.7352 -1.5451 13 1 10.1869 -0.8015 -0.6204 14 6 9.6874 -2.0711 -2.2876 15 6 10.1863 0.3547 -2.4141 16 1 9.5709 1.1935 -2.7040 17 6 11.4963 0.2816 -2.8381 18 7 11.9958 1.2326 -3.5969 19 14 12.5610 -1.1688 -2.3360 20 1 12.4339 -2.2494 -3.3467 21 1 13.9788 -0.7357 -2.2499 22 1 12.1165 -1.6744 -1.0123 23 6 3.5786 -1.2008 0.0010 24 6 2.1972 -1.1980 -0.0052 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.6558 2.1326 -0.0004 29 1 4.1173 2.1368 0.0111 30 1 5.9840 -1.8323 0.9008 31 1 5.9926 -1.8284 -0.8791 32 1 7.8824 -0.6682 2.1349 33 1 9.2705 -0.0458 1.2112 34 1 7.6959 0.7794 1.1159 35 1 7.6048 -0.6893 -1.9928 36 1 9.1142 -2.0048 -3.2123 37 1 10.7273 -2.3007 -2.5199 38 1 9.2732 -2.8594 -1.6590 39 1 12.9173 1.1810 -3.8955 40 1 4.1172 -2.1369 0.0007 41 1 1.6558 -2.1326 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040499797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:50 Heat of formation + Delta-G solvation = -14.466197 kcal Electronic energy + Delta-G solvation = -19550.084355 eV Core-core repulsion = 16623.209426 eV Total energy + Delta-G solvation = -2926.874929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13823 -38.05100 -36.47050 -33.25803 -31.95323 -31.14242 -30.97470 -27.61349 -27.05504 -25.95882 -25.03821 -22.85234 -21.45381 -20.54495 -19.72251 -18.16338 -16.79103 -15.90070 -15.76392 -15.40186 -15.08773 -14.62739 -14.35451 -13.88660 -13.71300 -13.52393 -13.17979 -13.07520 -12.65760 -12.40659 -12.22656 -12.17846 -11.80244 -11.60747 -11.58094 -11.18749 -11.16588 -10.79173 -10.71623 -10.54378 -10.24305 -10.07463 -9.48139 -9.11636 -9.04942 -8.54808 -8.00656 -7.40766 -6.01806 -3.98731 1.29766 1.40505 3.25731 3.33183 3.35259 3.38755 3.71691 4.41812 4.68918 4.78191 4.83078 4.89436 4.99623 5.15749 5.18862 5.27742 5.28756 5.37862 5.43669 5.53193 5.65473 5.70456 5.79073 5.94151 6.00068 6.11401 6.19598 6.26056 6.30397 6.35527 6.38430 6.52640 6.54151 6.73747 6.76873 6.84449 7.11511 7.54759 7.74099 7.93861 8.33864 8.72737 9.11172 9.60801 11.11940 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003675 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.095400 B = 7618.010572 C = 7804.868595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.149 4.149 5 C 0.134 3.866 6 O -0.289 6.289 7 C 0.062 3.938 8 C 0.083 3.917 9 H 0.053 0.947 10 C -0.135 4.135 11 N -0.660 5.660 12 C 0.182 3.818 13 H 0.035 0.965 14 C -0.184 4.184 15 C -0.495 4.495 16 H 0.082 0.918 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.270 1.270 23 C -0.211 4.211 24 C -0.082 4.082 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.331 0.669 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.024 0.976 39 H 0.263 0.737 40 H 0.125 0.875 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.509 -6.259 9.178 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C -0.099 4.099 4 C -0.168 4.168 5 C 0.088 3.912 6 O -0.202 6.202 7 C -0.013 4.013 8 C -0.027 4.027 9 H 0.071 0.929 10 C -0.193 4.193 11 N -0.291 5.291 12 C 0.073 3.927 13 H 0.053 0.947 14 C -0.243 4.243 15 C -0.534 4.534 16 H 0.100 0.900 17 C -0.135 4.135 18 N -0.540 5.540 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.224 1.224 22 H -0.195 1.195 23 C -0.230 4.230 24 C -0.100 4.100 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.049 -5.427 9.396 21.923 hybrid contribution 0.683 -2.113 -0.227 2.232 sum -18.367 -7.540 9.169 21.869 Atomic orbital electron populations 1.20684 0.91370 1.02330 1.01946 1.19767 0.96000 0.93139 1.04803 1.20828 0.93059 0.97613 0.98417 1.20487 0.93667 0.96700 1.05944 1.19154 0.83293 0.93946 0.94847 1.86265 1.15019 1.31374 1.87502 1.23090 0.93655 0.83960 1.00631 1.21624 0.90019 0.96734 0.94363 0.92935 1.21697 1.02096 1.00659 0.94806 1.60628 1.04655 1.61063 1.02798 1.19707 0.85685 0.91764 0.95574 0.94698 1.22892 1.00821 0.99700 1.00878 1.20987 0.96619 1.06602 1.29173 0.89976 1.24950 0.97675 0.95935 0.94924 1.69888 1.15117 1.33262 1.35783 0.86904 0.79326 0.82860 0.79265 1.20859 1.22450 1.19526 1.21259 0.95302 0.97223 1.09221 1.20774 0.93321 0.97492 0.98384 0.91638 0.91986 0.91846 0.85646 0.84999 0.92146 0.92370 0.93862 0.92237 0.91226 0.85070 0.92708 0.93602 0.95662 0.92736 0.85699 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.14 -1.42 5.88 -104.60 -0.62 -2.03 16 3 C -0.08 -0.88 9.69 -39.60 -0.38 -1.27 16 4 C -0.15 -1.93 9.99 -39.43 -0.39 -2.32 16 5 C 0.13 1.87 6.69 -39.22 -0.26 1.60 16 6 O -0.29 -4.50 9.20 -19.42 -0.18 -4.68 16 7 C 0.06 0.86 4.29 37.16 0.16 1.02 16 8 C 0.08 1.37 2.83 -67.71 -0.19 1.17 16 9 H 0.05 0.84 7.11 -51.93 -0.37 0.47 16 10 C -0.13 -2.20 9.20 37.16 0.34 -1.86 16 11 N -0.66 -13.45 5.99 -100.96 -0.60 -14.06 16 12 C 0.18 4.26 1.98 -68.86 -0.14 4.12 16 13 H 0.04 0.85 6.17 -51.93 -0.32 0.53 16 14 C -0.18 -3.92 8.63 37.16 0.32 -3.60 16 15 C -0.50 -14.10 9.42 -34.44 -0.32 -14.43 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 18 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 19 Si 0.89 22.03 24.37 -169.99 -4.14 17.89 16 20 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 23 C -0.21 -2.55 9.04 -39.43 -0.36 -2.90 16 24 C -0.08 -0.87 9.69 -39.61 -0.38 -1.26 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 31 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.06 7.43 -51.92 -0.39 0.67 16 34 H 0.07 1.22 7.56 -51.93 -0.39 0.82 16 35 H 0.33 6.47 8.02 -39.29 -0.32 6.15 16 36 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 37 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 38 H 0.02 0.45 7.43 -51.93 -0.39 0.07 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -31.30 326.43 -7.63 -38.93 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.44 Total: 4.53 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.96 Total: -20.36 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.17 Total: -41.22 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.18 Total: -4.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.30 -7.63 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.468 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds