Wall clock time and date at job start Mon Mar 30 2020 06:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94508 * 2 1 4 4 C 1.38149 * 120.05411 * 179.70262 * 3 2 1 5 5 C 1.38726 * 119.94477 * 0.28574 * 4 3 2 6 6 O 1.35900 * 120.05752 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47411 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47524 * 175.00187 * 8 7 6 10 10 C 1.52998 * 109.46876 * 54.99693 * 8 7 6 11 11 N 1.46898 * 109.47155 * 295.00149 * 8 7 6 12 12 C 1.46900 * 111.00292 * 204.99580 * 11 8 7 13 13 H 1.08993 * 109.47031 * 325.00384 * 12 11 8 14 14 C 1.53008 * 109.46768 * 84.99934 * 12 11 8 15 15 C 1.50699 * 109.47253 * 204.99813 * 12 11 8 16 16 H 1.07998 * 120.00210 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99796 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99896 * 179.97438 * 17 15 12 19 19 Si 1.86800 * 120.00011 * 0.02562 * 17 15 12 20 20 H 1.48502 * 109.46966 * 89.99561 * 19 17 15 21 21 H 1.48501 * 109.46957 * 209.99524 * 19 17 15 22 22 H 1.48501 * 109.47152 * 329.99902 * 19 17 15 23 23 C 1.38729 * 119.89044 * 359.97438 * 5 4 3 24 24 C 1.38144 * 119.94142 * 0.02562 * 23 5 4 25 25 H 1.09002 * 109.47294 * 89.99406 * 1 2 3 26 26 H 1.08996 * 109.47057 * 209.99743 * 1 2 3 27 27 H 1.09005 * 109.46844 * 329.99277 * 1 2 3 28 28 H 1.08002 * 119.97497 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.02723 * 180.30253 * 4 3 2 30 30 H 1.08997 * 109.47423 * 299.99641 * 7 6 5 31 31 H 1.08995 * 109.47128 * 59.99997 * 7 6 5 32 32 H 1.09004 * 109.47274 * 60.00760 * 10 8 7 33 33 H 1.09010 * 109.47310 * 179.97438 * 10 8 7 34 34 H 1.09001 * 109.47721 * 300.00066 * 10 8 7 35 35 H 1.00904 * 111.00259 * 328.95511 * 11 8 7 36 36 H 1.08993 * 109.46977 * 60.00417 * 14 12 11 37 37 H 1.09000 * 109.46978 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.46961 * 300.00169 * 14 12 11 39 39 H 0.96999 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.08007 * 120.02953 * 179.97438 * 23 5 4 41 41 H 1.08007 * 119.97030 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.2734 0.0000 0.0064 6 8 5.6324 -0.0001 0.0131 7 6 6.2811 -1.2733 0.0135 8 6 7.7979 -1.0730 0.0207 9 1 8.2919 -2.0405 0.1105 10 6 8.1898 -0.1882 1.2057 11 7 8.2123 -0.4261 -1.2314 12 6 9.6137 -0.7352 -1.5451 13 1 10.1869 -0.8015 -0.6204 14 6 9.6874 -2.0711 -2.2876 15 6 10.1863 0.3547 -2.4141 16 1 9.5709 1.1935 -2.7040 17 6 11.4963 0.2816 -2.8381 18 7 11.9958 1.2326 -3.5969 19 14 12.5610 -1.1688 -2.3360 20 1 12.4339 -2.2494 -3.3467 21 1 13.9788 -0.7357 -2.2499 22 1 12.1165 -1.6744 -1.0123 23 6 3.5786 -1.2008 0.0010 24 6 2.1972 -1.1980 -0.0052 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.6558 2.1326 -0.0004 29 1 4.1173 2.1368 0.0111 30 1 5.9840 -1.8323 0.9008 31 1 5.9926 -1.8284 -0.8791 32 1 7.8824 -0.6682 2.1349 33 1 9.2705 -0.0458 1.2112 34 1 7.6959 0.7794 1.1159 35 1 7.6048 -0.6893 -1.9928 36 1 9.1142 -2.0048 -3.2123 37 1 10.7273 -2.3007 -2.5199 38 1 9.2732 -2.8594 -1.6590 39 1 12.9173 1.1810 -3.8955 40 1 4.1172 -2.1369 0.0007 41 1 1.6558 -2.1326 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040499797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:49 Heat of formation + Delta-G solvation = -35.174740 kcal Electronic energy + Delta-G solvation = -19550.982345 eV Core-core repulsion = 16623.209426 eV Total energy + Delta-G solvation = -2927.772919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10209 -39.15379 -37.89039 -35.03530 -33.29442 -32.44747 -31.91682 -29.21550 -28.10259 -27.13803 -26.76533 -23.81878 -22.53047 -22.06259 -21.10755 -19.16438 -18.78676 -17.15645 -17.05077 -16.68306 -16.28392 -15.86786 -15.57484 -15.18925 -14.70388 -14.66689 -14.43584 -14.35639 -14.16637 -13.84412 -13.75357 -13.20391 -13.04333 -12.85303 -12.76846 -12.46339 -12.36422 -12.33704 -12.05145 -11.80477 -11.63486 -11.55192 -11.36958 -11.14713 -10.74773 -9.91786 -9.00316 -8.90862 -8.26313 -6.28759 0.43058 0.52083 1.29002 1.35168 1.45522 2.32466 2.33195 2.84442 3.07747 3.41653 3.76356 3.97898 4.00737 4.04442 4.12929 4.30536 4.38647 4.46090 4.48039 4.50074 4.55116 4.66458 4.70392 4.77805 4.84883 4.87767 4.91539 5.01967 5.11398 5.14346 5.21722 5.39733 5.42237 5.43246 5.50185 5.69240 5.72744 5.94647 6.06411 6.57591 6.71868 6.76211 6.79716 7.36180 8.91659 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003675 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.095400 B = 7618.010572 C = 7804.868595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.086 4.086 4 C -0.172 4.172 5 C 0.106 3.894 6 O -0.318 6.318 7 C 0.067 3.933 8 C 0.081 3.919 9 H 0.071 0.929 10 C -0.131 4.131 11 N -0.679 5.679 12 C 0.188 3.812 13 H 0.031 0.969 14 C -0.178 4.178 15 C -0.503 4.503 16 H 0.030 0.970 17 C 0.005 3.995 18 N -0.954 5.954 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.300 1.300 22 H -0.247 1.247 23 C -0.215 4.215 24 C -0.086 4.086 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.334 0.666 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.264 0.736 40 H 0.140 0.860 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.272 -9.312 10.565 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.104 4.104 4 C -0.191 4.191 5 C 0.061 3.939 6 O -0.231 6.231 7 C -0.009 4.009 8 C -0.029 4.029 9 H 0.088 0.912 10 C -0.189 4.189 11 N -0.310 5.310 12 C 0.079 3.921 13 H 0.049 0.951 14 C -0.237 4.237 15 C -0.542 4.542 16 H 0.048 0.952 17 C -0.191 4.191 18 N -0.595 5.595 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.228 1.228 22 H -0.171 1.171 23 C -0.233 4.233 24 C -0.104 4.104 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.163 0.837 29 H 0.140 0.860 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.157 0.843 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.852 -8.492 10.799 24.971 hybrid contribution 1.070 -1.036 -0.650 1.625 sum -19.782 -9.528 10.149 24.189 Atomic orbital electron populations 1.20743 0.89091 1.03563 1.02804 1.20192 0.97723 0.92741 1.03131 1.21114 0.92322 0.99088 0.97840 1.20651 0.94792 0.96412 1.07195 1.19384 0.82752 0.95051 0.96744 1.86213 1.16219 1.32440 1.88252 1.23065 0.91521 0.83811 1.02468 1.21730 0.92291 0.96920 0.91938 0.91182 1.21666 1.00449 1.00217 0.96595 1.60435 1.03277 1.62747 1.04554 1.19439 0.87162 0.91220 0.94316 0.95119 1.22742 1.00496 0.99167 1.01302 1.21304 0.96511 1.06746 1.29655 0.95200 1.25872 0.99256 0.99147 0.94842 1.70065 1.15721 1.35965 1.37783 0.85763 0.76632 0.79128 0.80230 1.19182 1.22812 1.17095 1.21464 0.96061 0.96981 1.08839 1.21153 0.92996 0.98802 0.97459 0.90835 0.90636 0.90839 0.83656 0.85977 0.89327 0.91326 0.90613 0.94284 0.93264 0.84751 0.92770 0.94552 0.91673 0.92659 0.84265 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.23 0.71 -0.53 16 2 C -0.14 -2.53 5.88 -19.85 -0.12 -2.65 16 3 C -0.09 -1.78 9.69 22.26 0.22 -1.56 16 4 C -0.17 -4.49 9.99 22.37 0.22 -4.27 16 5 C 0.11 2.92 6.69 22.50 0.15 3.07 16 6 O -0.32 -9.84 9.20 -92.42 -0.85 -10.69 16 7 C 0.07 1.69 4.29 71.98 0.31 2.00 16 8 C 0.08 2.51 2.83 44.92 0.13 2.64 16 9 H 0.07 1.97 7.11 -2.39 -0.02 1.95 16 10 C -0.13 -4.19 9.20 71.98 0.66 -3.52 16 11 N -0.68 -27.54 5.99 -473.31 -2.83 -30.37 16 12 C 0.19 8.71 1.98 44.17 0.09 8.80 16 13 H 0.03 1.46 6.17 -2.39 -0.01 1.44 16 14 C -0.18 -7.13 8.63 71.98 0.62 -6.51 16 15 C -0.50 -29.63 9.42 25.60 0.24 -29.39 16 16 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 17 C 0.01 0.30 5.45 84.66 0.46 0.76 16 18 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 19 Si 0.96 45.27 24.37 68.60 1.67 46.94 16 20 H -0.27 -11.87 6.87 99.48 0.68 -11.19 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.25 -10.70 6.53 99.48 0.65 -10.05 16 23 C -0.21 -4.77 9.04 22.36 0.20 -4.56 16 24 C -0.09 -1.62 9.69 22.25 0.22 -1.40 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 27 H 0.07 0.73 8.08 -2.38 -0.02 0.71 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 29 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.09 1.75 7.66 -2.39 -0.02 1.73 16 31 H 0.07 1.59 7.54 -2.39 -0.02 1.57 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.87 16 33 H 0.04 1.37 7.43 -2.38 -0.02 1.35 16 34 H 0.05 1.74 7.56 -2.39 -0.02 1.73 16 35 H 0.33 13.01 8.02 -89.69 -0.72 12.29 16 36 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.04 1.52 3.27 -2.39 -0.01 1.51 16 38 H 0.06 2.08 7.43 -2.39 -0.02 2.07 16 39 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 40 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 41 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -70.91 326.43 2.61 -68.30 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.21 Total: 24.00 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.11 Total: -37.12 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.53 Total: -91.42 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.85 Total: -10.69 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -70.91 2.61 -68.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.121 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds