Wall clock time and date at job start Mon Mar 30 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94508 * 2 1 4 4 C 1.38149 * 120.05411 * 179.70262 * 3 2 1 5 5 C 1.38726 * 119.94477 * 0.28574 * 4 3 2 6 6 O 1.35900 * 120.05752 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47411 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47615 * 185.00113 * 8 7 6 10 10 C 1.53007 * 109.46826 * 305.00233 * 8 7 6 11 11 N 1.46899 * 109.47143 * 64.99575 * 8 7 6 12 12 C 1.46901 * 111.00111 * 154.99995 * 11 8 7 13 13 C 1.53001 * 109.47448 * 180.02562 * 12 11 8 14 14 C 1.50693 * 109.47361 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00143 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99953 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99940 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47080 * 90.00088 * 18 16 14 20 20 H 1.48506 * 109.46901 * 209.99575 * 18 16 14 21 21 H 1.48497 * 109.47258 * 329.99678 * 18 16 14 22 22 C 1.38729 * 119.89044 * 359.97438 * 5 4 3 23 23 C 1.38144 * 119.94142 * 0.02562 * 22 5 4 24 24 H 1.09002 * 109.47294 * 89.99406 * 1 2 3 25 25 H 1.08996 * 109.47057 * 209.99743 * 1 2 3 26 26 H 1.09005 * 109.46844 * 329.99277 * 1 2 3 27 27 H 1.08002 * 119.97497 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.02723 * 180.30253 * 4 3 2 29 29 H 1.08997 * 109.47423 * 299.99641 * 7 6 5 30 30 H 1.08995 * 109.47128 * 59.99997 * 7 6 5 31 31 H 1.09000 * 109.46480 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47199 * 299.99330 * 10 8 7 33 33 H 1.08997 * 109.47404 * 60.00046 * 10 8 7 34 34 H 1.00900 * 111.00762 * 278.95848 * 11 8 7 35 35 H 1.09000 * 109.46976 * 300.00347 * 12 11 8 36 36 H 1.08997 * 109.46694 * 60.00556 * 12 11 8 37 37 H 1.09004 * 109.46778 * 300.00640 * 13 12 11 38 38 H 1.09004 * 109.46825 * 59.99724 * 13 12 11 39 39 H 0.97003 * 120.00086 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.02953 * 179.97438 * 22 5 4 41 41 H 1.08007 * 119.97030 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.2734 0.0000 0.0064 6 8 5.6324 -0.0001 0.0131 7 6 6.2811 -1.2733 0.0135 8 6 7.7979 -1.0730 0.0207 9 1 8.2927 -2.0401 -0.0686 10 6 8.2004 -0.1835 -1.1575 11 7 8.2011 -0.4309 1.2789 12 6 9.5996 -0.7415 1.6039 13 6 9.9819 -0.0575 2.9180 14 6 11.4167 -0.3755 3.2511 15 1 11.9978 -1.0032 2.5916 16 6 11.9874 0.1338 4.3982 17 7 11.2797 0.8977 5.2014 18 14 13.7659 -0.2611 4.8113 19 1 14.6536 0.7668 4.2107 20 1 13.9420 -0.2667 6.2859 21 1 14.1159 -1.5972 4.2659 22 6 3.5786 -1.2008 0.0010 23 6 2.1972 -1.1980 -0.0052 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6558 2.1326 -0.0004 28 1 4.1173 2.1368 0.0111 29 1 5.9840 -1.8323 0.9008 30 1 5.9926 -1.8284 -0.8791 31 1 9.2809 -0.0404 -1.1520 32 1 7.9013 -0.6598 -2.0911 33 1 7.7057 0.7837 -1.0682 34 1 8.0517 0.5662 1.2403 35 1 9.7175 -1.8200 1.7084 36 1 10.2470 -0.3809 0.8046 37 1 9.8638 1.0211 2.8139 38 1 9.3344 -0.4183 3.7172 39 1 11.6813 1.2563 6.0083 40 1 4.1172 -2.1369 0.0007 41 1 1.6558 -2.1326 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040499906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:41 Heat of formation + Delta-G solvation = -34.157070 kcal Electronic energy + Delta-G solvation = -18957.025811 eV Core-core repulsion = 16029.297021 eV Total energy + Delta-G solvation = -2927.728790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17771 -38.07965 -36.34772 -33.35250 -32.10104 -31.18344 -30.98764 -27.94862 -27.11641 -26.03709 -24.00820 -22.84787 -21.52875 -20.60598 -20.17874 -18.18528 -16.39338 -16.00073 -15.77719 -15.40292 -14.96018 -14.52119 -14.33928 -14.12631 -13.98788 -13.73574 -13.56653 -13.10754 -12.54733 -12.39593 -12.31358 -12.20111 -11.82615 -11.61716 -11.41267 -11.11831 -10.96496 -10.89411 -10.81353 -10.63934 -10.48478 -10.00665 -9.35479 -9.12766 -9.08322 -8.34145 -8.05131 -7.79351 -5.98170 -4.00937 1.26363 1.36710 3.29335 3.32695 3.38826 3.42043 3.68117 4.42851 4.63346 4.68488 4.75382 4.86910 4.94980 5.13518 5.19133 5.25783 5.35620 5.37558 5.40588 5.42786 5.51949 5.61665 5.67536 5.76561 5.90606 5.97454 5.99534 6.22123 6.26859 6.34586 6.35460 6.47329 6.50828 6.73862 6.99094 7.44345 7.53289 7.75402 7.84369 7.98392 8.10810 8.44984 9.06482 9.62718 11.13250 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034677 B = 0.002998 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.255667 B = 9338.456752 C = 9731.329202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.136 4.136 3 C -0.081 4.081 4 C -0.152 4.152 5 C 0.136 3.864 6 O -0.304 6.304 7 C 0.072 3.928 8 C 0.085 3.915 9 H 0.092 0.908 10 C -0.179 4.179 11 N -0.684 5.684 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.081 4.081 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.343 0.657 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.127 0.873 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 -2.853 -13.592 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C -0.099 4.099 4 C -0.171 4.171 5 C 0.090 3.910 6 O -0.217 6.217 7 C -0.004 4.004 8 C -0.026 4.026 9 H 0.110 0.890 10 C -0.238 4.238 11 N -0.315 5.315 12 C -0.063 4.063 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.227 4.227 23 C -0.099 4.099 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.145 0.855 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.003 -3.110 -13.015 23.242 hybrid contribution 1.488 0.116 -0.329 1.528 sum -17.515 -2.994 -13.344 22.222 Atomic orbital electron populations 1.20688 0.91331 1.02485 1.01862 1.19778 0.96042 0.93133 1.04658 1.20818 0.93039 0.97635 0.98455 1.20455 0.93731 0.96541 1.06345 1.19073 0.83004 0.93952 0.94974 1.86096 1.15525 1.32325 1.87761 1.23000 0.92890 0.83672 1.00798 1.21620 0.91867 0.99201 0.89950 0.89005 1.22433 1.01805 1.01130 0.98472 1.60677 1.24182 1.16475 1.30147 1.22201 0.84799 1.00181 0.99126 1.19062 0.95900 0.95410 0.90863 1.21174 0.97019 1.30848 1.07003 0.92786 1.25009 0.97890 0.95198 0.96306 1.69977 1.36346 1.33694 1.13182 0.86590 0.85165 0.78708 0.77485 1.20709 1.21192 1.19909 1.21275 0.95288 0.97313 1.08796 1.20795 0.93338 0.97533 0.98226 0.91704 0.91881 0.91799 0.85667 0.85216 0.91207 0.92484 0.92344 0.92798 0.91692 0.83825 0.92439 0.96521 0.96798 0.95680 0.92989 0.85498 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.14 -1.36 5.88 -104.60 -0.62 -1.98 16 3 C -0.08 -0.85 9.69 -39.60 -0.38 -1.23 16 4 C -0.15 -1.85 9.99 -39.43 -0.39 -2.24 16 5 C 0.14 1.80 6.69 -39.22 -0.26 1.54 16 6 O -0.30 -4.33 9.20 -19.42 -0.18 -4.51 16 7 C 0.07 0.92 4.58 37.16 0.17 1.09 16 8 C 0.08 1.20 2.99 -67.71 -0.20 1.00 16 9 H 0.09 1.24 7.80 -51.93 -0.40 0.84 16 10 C -0.18 -2.35 8.96 37.16 0.33 -2.02 16 11 N -0.68 -12.39 6.20 -106.72 -0.66 -13.06 16 12 C 0.06 1.37 5.42 -3.82 -0.02 1.35 16 13 C 0.03 0.66 5.23 -27.89 -0.15 0.52 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 23 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.07 0.92 7.66 -51.93 -0.40 0.53 16 30 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.89 7.55 -51.93 -0.39 0.50 16 34 H 0.34 6.34 8.47 -39.29 -0.33 6.01 16 35 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.02 0.34 7.43 -51.93 -0.39 -0.04 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.15 339.64 -9.11 -40.25 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.79 Total: 1.99 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.31 Total: -20.10 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.08 Total: -39.59 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.18 Total: -4.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.15 -9.11 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.097 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds