Wall clock time and date at job start Mon Mar 30 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94508 * 2 1 4 4 C 1.38149 * 120.05411 * 179.70262 * 3 2 1 5 5 C 1.38726 * 119.94477 * 0.28574 * 4 3 2 6 6 O 1.35900 * 120.05752 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47411 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47615 * 185.00113 * 8 7 6 10 10 C 1.53007 * 109.46826 * 305.00233 * 8 7 6 11 11 N 1.46899 * 109.47143 * 64.99575 * 8 7 6 12 12 C 1.46901 * 111.00111 * 154.99995 * 11 8 7 13 13 C 1.53001 * 109.47448 * 180.02562 * 12 11 8 14 14 C 1.50693 * 109.47361 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00143 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99953 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99940 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47080 * 90.00088 * 18 16 14 20 20 H 1.48506 * 109.46901 * 209.99575 * 18 16 14 21 21 H 1.48497 * 109.47258 * 329.99678 * 18 16 14 22 22 C 1.38729 * 119.89044 * 359.97438 * 5 4 3 23 23 C 1.38144 * 119.94142 * 0.02562 * 22 5 4 24 24 H 1.09002 * 109.47294 * 89.99406 * 1 2 3 25 25 H 1.08996 * 109.47057 * 209.99743 * 1 2 3 26 26 H 1.09005 * 109.46844 * 329.99277 * 1 2 3 27 27 H 1.08002 * 119.97497 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.02723 * 180.30253 * 4 3 2 29 29 H 1.08997 * 109.47423 * 299.99641 * 7 6 5 30 30 H 1.08995 * 109.47128 * 59.99997 * 7 6 5 31 31 H 1.09000 * 109.46480 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47199 * 299.99330 * 10 8 7 33 33 H 1.08997 * 109.47404 * 60.00046 * 10 8 7 34 34 H 1.00900 * 111.00762 * 278.95848 * 11 8 7 35 35 H 1.09000 * 109.46976 * 300.00347 * 12 11 8 36 36 H 1.08997 * 109.46694 * 60.00556 * 12 11 8 37 37 H 1.09004 * 109.46778 * 300.00640 * 13 12 11 38 38 H 1.09004 * 109.46825 * 59.99724 * 13 12 11 39 39 H 0.97003 * 120.00086 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.02953 * 179.97438 * 22 5 4 41 41 H 1.08007 * 119.97030 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.2734 0.0000 0.0064 6 8 5.6324 -0.0001 0.0131 7 6 6.2811 -1.2733 0.0135 8 6 7.7979 -1.0730 0.0207 9 1 8.2927 -2.0401 -0.0686 10 6 8.2004 -0.1835 -1.1575 11 7 8.2011 -0.4309 1.2789 12 6 9.5996 -0.7415 1.6039 13 6 9.9819 -0.0575 2.9180 14 6 11.4167 -0.3755 3.2511 15 1 11.9978 -1.0032 2.5916 16 6 11.9874 0.1338 4.3982 17 7 11.2797 0.8977 5.2014 18 14 13.7659 -0.2611 4.8113 19 1 14.6536 0.7668 4.2107 20 1 13.9420 -0.2667 6.2859 21 1 14.1159 -1.5972 4.2659 22 6 3.5786 -1.2008 0.0010 23 6 2.1972 -1.1980 -0.0052 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6558 2.1326 -0.0004 28 1 4.1173 2.1368 0.0111 29 1 5.9840 -1.8323 0.9008 30 1 5.9926 -1.8284 -0.8791 31 1 9.2809 -0.0404 -1.1520 32 1 7.9013 -0.6598 -2.0911 33 1 7.7057 0.7837 -1.0682 34 1 8.0517 0.5662 1.2403 35 1 9.7175 -1.8200 1.7084 36 1 10.2470 -0.3809 0.8046 37 1 9.8638 1.0211 2.8139 38 1 9.3344 -0.4183 3.7172 39 1 11.6813 1.2563 6.0083 40 1 4.1172 -2.1369 0.0007 41 1 1.6558 -2.1326 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040499906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:41 Heat of formation + Delta-G solvation = -52.716318 kcal Electronic energy + Delta-G solvation = -18957.830600 eV Core-core repulsion = 16029.297021 eV Total energy + Delta-G solvation = -2928.533579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09113 -39.07559 -37.65545 -35.33284 -33.27766 -32.43635 -31.92445 -29.70530 -28.07052 -26.85240 -25.95315 -23.76923 -22.52970 -22.37926 -21.27258 -19.13956 -18.49830 -17.13063 -16.78115 -16.53721 -16.29110 -16.16112 -15.61005 -15.30729 -15.07091 -14.47934 -14.37731 -14.29192 -14.25418 -13.79883 -13.61256 -13.08143 -12.95130 -12.86326 -12.85265 -12.51098 -12.37152 -12.32842 -12.07173 -11.98296 -11.69029 -11.55174 -11.39001 -11.17018 -10.57510 -9.92228 -9.26590 -8.92052 -8.20719 -6.32722 0.42581 0.51436 1.39811 1.41770 1.52915 2.34410 2.40035 2.83915 3.12587 3.27954 3.79176 3.97652 4.00284 4.10560 4.12739 4.28638 4.35330 4.46724 4.49248 4.53844 4.57244 4.64790 4.72356 4.85783 4.87410 4.91060 4.97806 5.07373 5.13329 5.20515 5.26854 5.42087 5.44388 5.47210 5.66738 5.72228 5.78192 5.94032 6.13781 6.27516 6.50135 6.56724 6.85075 7.36763 8.91646 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034677 B = 0.002998 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.255667 B = 9338.456752 C = 9731.329202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.086 4.086 4 C -0.171 4.171 5 C 0.108 3.892 6 O -0.324 6.324 7 C 0.076 3.924 8 C 0.083 3.917 9 H 0.104 0.896 10 C -0.171 4.171 11 N -0.692 5.692 12 C 0.085 3.915 13 C 0.031 3.969 14 C -0.544 4.544 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.261 1.261 22 C -0.216 4.216 23 C -0.087 4.087 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.127 0.873 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.338 0.662 35 H 0.062 0.938 36 H 0.022 0.978 37 H -0.013 1.013 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.137 0.863 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.435 -4.031 -14.763 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.104 4.104 4 C -0.189 4.189 5 C 0.062 3.938 6 O -0.238 6.238 7 C 0.001 3.999 8 C -0.027 4.027 9 H 0.122 0.878 10 C -0.230 4.230 11 N -0.323 5.323 12 C -0.044 4.044 13 C -0.006 4.006 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.185 1.185 22 C -0.235 4.235 23 C -0.105 4.105 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.005 0.995 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.541 -4.299 -14.210 24.541 hybrid contribution 1.520 0.506 0.023 1.603 sum -18.021 -3.793 -14.187 23.246 Atomic orbital electron populations 1.20745 0.89127 1.03453 1.02903 1.20199 0.97729 0.92785 1.03113 1.21127 0.92449 0.99017 0.97813 1.20662 0.94744 0.96380 1.07153 1.19336 0.82682 0.94993 0.96761 1.86053 1.16401 1.32951 1.88369 1.22955 0.91623 0.83576 1.01782 1.21763 0.93105 0.99463 0.88393 0.87818 1.22331 1.01014 1.00622 0.99040 1.60599 1.22114 1.16421 1.33160 1.21811 0.86696 0.99565 0.96326 1.18921 0.94889 0.94073 0.92759 1.21621 0.98082 1.31024 1.07486 0.91911 1.26023 1.03035 0.94809 0.96106 1.70123 1.38676 1.34785 1.13759 0.85391 0.78890 0.79104 0.77300 1.19719 1.20760 1.18543 1.21474 0.96088 0.97158 1.08750 1.21145 0.93008 0.98826 0.97543 0.90509 0.90905 0.90919 0.83529 0.85468 0.91968 0.89684 0.93226 0.90352 0.92654 0.84372 0.91955 0.96010 0.99472 0.98985 0.92755 0.84520 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.23 0.71 -0.53 16 2 C -0.14 -2.51 5.88 -19.85 -0.12 -2.63 16 3 C -0.09 -1.71 9.69 22.26 0.22 -1.49 16 4 C -0.17 -4.18 9.99 22.37 0.22 -3.96 16 5 C 0.11 2.85 6.69 22.50 0.15 3.00 16 6 O -0.32 -9.29 9.20 -92.42 -0.85 -10.14 16 7 C 0.08 1.88 4.58 71.98 0.33 2.21 16 8 C 0.08 2.28 2.99 44.92 0.13 2.42 16 9 H 0.10 2.63 7.80 -2.39 -0.02 2.61 16 10 C -0.17 -4.31 8.96 71.98 0.65 -3.67 16 11 N -0.69 -25.45 6.20 -491.56 -3.05 -28.49 16 12 C 0.08 3.61 5.42 86.30 0.47 4.07 16 13 C 0.03 1.71 5.23 29.85 0.16 1.86 16 14 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 C -0.22 -4.86 9.04 22.36 0.20 -4.66 16 23 C -0.09 -1.66 9.69 22.25 0.22 -1.45 16 24 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 26 H 0.07 0.74 8.08 -2.38 -0.02 0.72 16 27 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.06 1.62 7.66 -2.39 -0.02 1.60 16 30 H 0.09 1.62 7.66 -2.39 -0.02 1.60 16 31 H 0.05 1.33 7.45 -2.39 -0.02 1.31 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.50 7.55 -2.39 -0.02 1.48 16 34 H 0.34 12.96 8.47 -89.69 -0.76 12.20 16 35 H 0.06 2.58 8.06 -2.39 -0.02 2.56 16 36 H 0.02 0.90 7.43 -2.39 -0.02 0.88 16 37 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 38 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.14 2.66 6.30 -2.91 -0.02 2.64 16 41 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -68.04 339.64 2.68 -65.36 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.23 Total: 20.19 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.03 Total: -35.78 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.76 Total: -86.46 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.85 Total: -10.14 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.04 2.68 -65.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.641 kcal (2) G-P(sol) polarization free energy of solvation -68.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds