Wall clock time and date at job start Mon Mar 30 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94508 * 2 1 4 4 C 1.38149 * 120.05411 * 179.70262 * 3 2 1 5 5 C 1.38726 * 119.94477 * 0.28574 * 4 3 2 6 6 O 1.35900 * 120.05752 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47411 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47524 * 175.00187 * 8 7 6 10 10 C 1.52998 * 109.46876 * 54.99693 * 8 7 6 11 11 N 1.46898 * 109.47155 * 295.00149 * 8 7 6 12 12 C 1.46900 * 111.00292 * 204.99580 * 11 8 7 13 13 C 1.53002 * 109.47305 * 179.97438 * 12 11 8 14 14 C 1.50701 * 109.46997 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00221 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00154 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00113 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46890 * 90.00180 * 18 16 14 20 20 H 1.48499 * 109.47089 * 210.00091 * 18 16 14 21 21 H 1.48494 * 109.47174 * 330.00246 * 18 16 14 22 22 C 1.38729 * 119.89044 * 359.97438 * 5 4 3 23 23 C 1.38144 * 119.94142 * 0.02562 * 22 5 4 24 24 H 1.09002 * 109.47294 * 89.99406 * 1 2 3 25 25 H 1.08996 * 109.47057 * 209.99743 * 1 2 3 26 26 H 1.09005 * 109.46844 * 329.99277 * 1 2 3 27 27 H 1.08002 * 119.97497 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.02723 * 180.30253 * 4 3 2 29 29 H 1.08997 * 109.47423 * 299.99641 * 7 6 5 30 30 H 1.08995 * 109.47128 * 59.99997 * 7 6 5 31 31 H 1.09001 * 109.47721 * 300.00066 * 10 8 7 32 32 H 1.09004 * 109.47274 * 60.00760 * 10 8 7 33 33 H 1.09010 * 109.47310 * 179.97438 * 10 8 7 34 34 H 1.00902 * 111.00513 * 81.04136 * 11 8 7 35 35 H 1.09001 * 109.47452 * 300.00168 * 12 11 8 36 36 H 1.09004 * 109.46700 * 60.00372 * 12 11 8 37 37 H 1.09000 * 109.46992 * 299.99985 * 13 12 11 38 38 H 1.08999 * 109.47125 * 59.99945 * 13 12 11 39 39 H 0.97002 * 120.00400 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.02953 * 179.97438 * 22 5 4 41 41 H 1.08007 * 119.97030 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.2734 0.0000 0.0064 6 8 5.6324 -0.0001 0.0131 7 6 6.2811 -1.2733 0.0135 8 6 7.7979 -1.0730 0.0207 9 1 8.2919 -2.0405 0.1105 10 6 8.1898 -0.1882 1.2057 11 7 8.2123 -0.4261 -1.2314 12 6 9.6137 -0.7352 -1.5451 13 6 10.0077 -0.0461 -2.8531 14 6 11.4452 -0.3639 -3.1751 15 1 12.0201 -0.9946 -2.5133 16 6 12.0263 0.1507 -4.3146 17 7 13.2809 -0.1262 -4.5954 18 14 11.0316 1.2411 -5.4597 19 1 11.1782 2.6592 -5.0441 20 1 11.5259 1.0792 -6.8506 21 1 9.6001 0.8516 -5.3946 22 6 3.5786 -1.2008 0.0010 23 6 2.1972 -1.1980 -0.0052 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6558 2.1326 -0.0004 28 1 4.1173 2.1368 0.0111 29 1 5.9840 -1.8323 0.9008 30 1 5.9926 -1.8284 -0.8791 31 1 7.6959 0.7794 1.1159 32 1 7.8824 -0.6682 2.1349 33 1 9.2705 -0.0458 1.2112 34 1 8.0625 0.5709 -1.1902 35 1 10.2540 -0.3779 -0.7385 36 1 9.7325 -1.8134 -1.6528 37 1 9.3674 -0.4039 -3.6594 38 1 9.8887 1.0320 -2.7458 39 1 13.6899 0.2361 -5.3969 40 1 4.1172 -2.1369 0.0007 41 1 1.6558 -2.1326 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040499907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:44 Heat of formation + Delta-G solvation = -30.944580 kcal Electronic energy + Delta-G solvation = -19023.593719 eV Core-core repulsion = 16096.004233 eV Total energy + Delta-G solvation = -2927.589486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24191 -38.15227 -36.46027 -33.36404 -32.15503 -31.32009 -31.11889 -28.41529 -27.17859 -26.09862 -23.97946 -22.88316 -21.59292 -20.54603 -20.14011 -18.25528 -16.77532 -16.14835 -15.85573 -15.46491 -15.00187 -14.59235 -14.37383 -14.09251 -13.96190 -13.76403 -13.62648 -13.21736 -12.73976 -12.55339 -12.40073 -12.27689 -12.02096 -11.67734 -11.53845 -11.36542 -11.04199 -10.99211 -10.86555 -10.70146 -10.07804 -9.85916 -9.68471 -9.21606 -9.14210 -8.52342 -8.11259 -7.92727 -6.03271 -4.01616 1.20546 1.30822 3.22541 3.33988 3.41316 3.48136 3.62273 4.48024 4.48863 4.61867 4.69927 4.81225 4.88406 5.07317 5.12861 5.19963 5.29390 5.31339 5.35000 5.37428 5.46084 5.55958 5.60948 5.71420 5.84387 5.91492 5.92712 6.16307 6.18858 6.21011 6.26961 6.37042 6.45323 6.67829 6.78179 7.14060 7.39230 7.41989 7.62106 7.77018 7.92646 8.54107 9.00608 9.59358 11.10015 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.003352 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.329476 B = 8350.787092 C = 8960.495543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.082 4.082 4 C -0.152 4.152 5 C 0.135 3.865 6 O -0.305 6.305 7 C 0.072 3.928 8 C 0.085 3.915 9 H 0.094 0.906 10 C -0.180 4.180 11 N -0.687 5.687 12 C 0.072 3.928 13 C -0.010 4.010 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.263 1.263 22 C -0.208 4.208 23 C -0.081 4.081 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.342 0.658 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.009 0.991 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.838 -0.569 12.372 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.100 4.100 4 C -0.171 4.171 5 C 0.089 3.911 6 O -0.218 6.218 7 C -0.004 4.004 8 C -0.026 4.026 9 H 0.112 0.888 10 C -0.239 4.239 11 N -0.318 5.318 12 C -0.056 4.056 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.187 1.187 22 C -0.226 4.226 23 C -0.099 4.099 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.791 -0.894 11.833 26.587 hybrid contribution 0.157 0.850 -0.027 0.865 sum -23.635 -0.044 11.806 26.419 Atomic orbital electron populations 1.20693 0.91301 1.02388 1.02020 1.19785 0.96068 0.93125 1.04563 1.20821 0.93038 0.97651 0.98458 1.20448 0.93733 0.96506 1.06409 1.19067 0.82968 0.93958 0.95079 1.86088 1.15559 1.32346 1.87812 1.23002 0.92805 0.83668 1.00923 1.21616 0.91889 0.99291 0.89768 0.88794 1.22433 1.01912 1.01084 0.98459 1.60686 1.23641 1.16234 1.31220 1.22003 0.84804 1.00496 0.98255 1.19544 0.97093 0.95115 0.93039 1.21069 0.94915 1.31535 1.08424 0.91132 1.25007 0.94770 0.96078 0.97582 1.69914 1.12220 1.45553 1.26659 0.86750 0.81311 0.81065 0.80039 1.20379 1.21443 1.18738 1.21278 0.95293 0.97315 1.08745 1.20804 0.93345 0.97560 0.98172 0.91571 0.91901 0.91837 0.85658 0.85257 0.92354 0.91206 0.91706 0.92672 0.92229 0.83954 0.95857 0.91786 0.95687 0.97276 0.92738 0.85470 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.14 -1.29 5.88 -104.60 -0.62 -1.91 16 3 C -0.08 -0.81 9.69 -39.60 -0.38 -1.19 16 4 C -0.15 -1.76 9.99 -39.43 -0.39 -2.15 16 5 C 0.14 1.71 6.69 -39.22 -0.26 1.44 16 6 O -0.30 -4.12 9.20 -19.42 -0.18 -4.30 16 7 C 0.07 0.87 4.58 37.16 0.17 1.04 16 8 C 0.09 1.15 2.99 -67.71 -0.20 0.95 16 9 H 0.09 1.21 7.80 -51.93 -0.40 0.81 16 10 C -0.18 -2.25 8.96 37.16 0.33 -1.92 16 11 N -0.69 -11.67 6.20 -106.72 -0.66 -12.33 16 12 C 0.07 1.46 5.42 -3.82 -0.02 1.44 16 13 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 14 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 18 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 22 C -0.21 -2.32 9.04 -39.43 -0.36 -2.67 16 23 C -0.08 -0.80 9.69 -39.61 -0.38 -1.18 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 30 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 31 H 0.06 0.84 7.55 -51.93 -0.39 0.45 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.79 7.46 -51.92 -0.39 0.41 16 34 H 0.34 5.82 8.47 -39.29 -0.33 5.49 16 35 H 0.02 0.47 7.44 -51.93 -0.39 0.08 16 36 H 0.06 1.29 8.06 -51.93 -0.42 0.88 16 37 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.13 1.25 6.30 -52.48 -0.33 0.92 16 41 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -31.57 336.04 -8.73 -40.30 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.75 Total: 1.58 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.31 Total: -20.41 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.11 Total: -39.77 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.18 Total: -4.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.57 -8.73 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.358 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds