Wall clock time and date at job start Mon Mar 30 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94508 * 2 1 4 4 C 1.38149 * 120.05411 * 179.70262 * 3 2 1 5 5 C 1.38726 * 119.94477 * 0.28574 * 4 3 2 6 6 O 1.35900 * 120.05752 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47411 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47524 * 175.00187 * 8 7 6 10 10 C 1.52998 * 109.46876 * 54.99693 * 8 7 6 11 11 N 1.46898 * 109.47155 * 295.00149 * 8 7 6 12 12 C 1.46900 * 111.00292 * 204.99580 * 11 8 7 13 13 C 1.53002 * 109.47305 * 179.97438 * 12 11 8 14 14 C 1.50701 * 109.46997 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00221 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00154 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00113 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46890 * 90.00180 * 18 16 14 20 20 H 1.48499 * 109.47089 * 210.00091 * 18 16 14 21 21 H 1.48494 * 109.47174 * 330.00246 * 18 16 14 22 22 C 1.38729 * 119.89044 * 359.97438 * 5 4 3 23 23 C 1.38144 * 119.94142 * 0.02562 * 22 5 4 24 24 H 1.09002 * 109.47294 * 89.99406 * 1 2 3 25 25 H 1.08996 * 109.47057 * 209.99743 * 1 2 3 26 26 H 1.09005 * 109.46844 * 329.99277 * 1 2 3 27 27 H 1.08002 * 119.97497 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.02723 * 180.30253 * 4 3 2 29 29 H 1.08997 * 109.47423 * 299.99641 * 7 6 5 30 30 H 1.08995 * 109.47128 * 59.99997 * 7 6 5 31 31 H 1.09001 * 109.47721 * 300.00066 * 10 8 7 32 32 H 1.09004 * 109.47274 * 60.00760 * 10 8 7 33 33 H 1.09010 * 109.47310 * 179.97438 * 10 8 7 34 34 H 1.00902 * 111.00513 * 81.04136 * 11 8 7 35 35 H 1.09001 * 109.47452 * 300.00168 * 12 11 8 36 36 H 1.09004 * 109.46700 * 60.00372 * 12 11 8 37 37 H 1.09000 * 109.46992 * 299.99985 * 13 12 11 38 38 H 1.08999 * 109.47125 * 59.99945 * 13 12 11 39 39 H 0.97002 * 120.00400 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.02953 * 179.97438 * 22 5 4 41 41 H 1.08007 * 119.97030 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.2734 0.0000 0.0064 6 8 5.6324 -0.0001 0.0131 7 6 6.2811 -1.2733 0.0135 8 6 7.7979 -1.0730 0.0207 9 1 8.2919 -2.0405 0.1105 10 6 8.1898 -0.1882 1.2057 11 7 8.2123 -0.4261 -1.2314 12 6 9.6137 -0.7352 -1.5451 13 6 10.0077 -0.0461 -2.8531 14 6 11.4452 -0.3639 -3.1751 15 1 12.0201 -0.9946 -2.5133 16 6 12.0263 0.1507 -4.3146 17 7 13.2809 -0.1262 -4.5954 18 14 11.0316 1.2411 -5.4597 19 1 11.1782 2.6592 -5.0441 20 1 11.5259 1.0792 -6.8506 21 1 9.6001 0.8516 -5.3946 22 6 3.5786 -1.2008 0.0010 23 6 2.1972 -1.1980 -0.0052 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6558 2.1326 -0.0004 28 1 4.1173 2.1368 0.0111 29 1 5.9840 -1.8323 0.9008 30 1 5.9926 -1.8284 -0.8791 31 1 7.6959 0.7794 1.1159 32 1 7.8824 -0.6682 2.1349 33 1 9.2705 -0.0458 1.2112 34 1 8.0625 0.5709 -1.1902 35 1 10.2540 -0.3779 -0.7385 36 1 9.7325 -1.8134 -1.6528 37 1 9.3674 -0.4039 -3.6594 38 1 9.8887 1.0320 -2.7458 39 1 13.6899 0.2361 -5.3969 40 1 4.1172 -2.1369 0.0007 41 1 1.6558 -2.1326 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040499907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:44 Heat of formation + Delta-G solvation = -50.369131 kcal Electronic energy + Delta-G solvation = -19024.436031 eV Core-core repulsion = 16096.004233 eV Total energy + Delta-G solvation = -2928.431798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09150 -39.08737 -37.68692 -35.29165 -33.43517 -32.54093 -31.92820 -30.06175 -28.07296 -26.85590 -25.80554 -23.75130 -22.48084 -22.25180 -21.26024 -19.18977 -18.89700 -17.15781 -16.77762 -16.36610 -16.34159 -16.16881 -15.63680 -15.29746 -15.07439 -14.67903 -14.50263 -14.36874 -14.28371 -13.83510 -13.71062 -13.21415 -13.01554 -12.89870 -12.86818 -12.45014 -12.37051 -12.15731 -11.94859 -11.79546 -11.75976 -11.55270 -11.44357 -11.38286 -10.78076 -9.92038 -9.30847 -8.92057 -8.31149 -6.35394 0.42763 0.51498 1.35364 1.37626 1.50960 2.33761 2.35639 2.84034 3.04454 3.22436 3.78896 3.97493 4.00211 4.09578 4.12757 4.27858 4.35289 4.46080 4.49286 4.49408 4.53097 4.62560 4.70919 4.84141 4.87308 4.90427 4.95624 4.97701 5.13280 5.20178 5.26316 5.30771 5.42120 5.47178 5.48170 5.62741 5.72500 5.93455 6.14467 6.24232 6.49413 6.56069 6.73086 7.29661 8.85414 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.003352 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.329476 B = 8350.787092 C = 8960.495543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.087 4.087 4 C -0.169 4.169 5 C 0.109 3.891 6 O -0.322 6.322 7 C 0.077 3.923 8 C 0.083 3.917 9 H 0.101 0.899 10 C -0.172 4.172 11 N -0.689 5.689 12 C 0.087 3.913 13 C -0.005 4.005 14 C -0.532 4.532 15 H 0.034 0.966 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.251 1.251 22 C -0.216 4.216 23 C -0.088 4.088 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.342 0.658 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.014 0.986 39 H 0.267 0.733 40 H 0.137 0.863 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.734 -0.200 12.689 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C -0.105 4.105 4 C -0.188 4.188 5 C 0.063 3.937 6 O -0.236 6.236 7 C 0.001 3.999 8 C -0.027 4.027 9 H 0.119 0.881 10 C -0.231 4.231 11 N -0.320 5.320 12 C -0.042 4.042 13 C -0.043 4.043 14 C -0.571 4.571 15 H 0.053 0.947 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.776 3.224 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.174 1.174 22 C -0.235 4.235 23 C -0.106 4.106 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.147 0.853 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.160 0.840 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.154 0.846 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.709 -0.530 12.174 29.357 hybrid contribution 1.031 0.684 -0.054 1.239 sum -25.678 0.154 12.119 28.394 Atomic orbital electron populations 1.20747 0.89230 1.03536 1.02771 1.20191 0.97676 0.92830 1.03140 1.21130 0.92542 0.98956 0.97825 1.20656 0.94655 0.96400 1.07057 1.19314 0.82676 0.94921 0.96763 1.86044 1.16335 1.32857 1.88382 1.22938 0.91468 0.83614 1.01869 1.21739 0.93108 0.99399 0.88464 0.88073 1.22338 1.01006 1.00787 0.98986 1.60610 1.21131 1.16481 1.33768 1.21665 0.86769 0.99627 0.96104 1.19436 0.94073 0.95741 0.95039 1.21405 0.96993 1.30758 1.07939 0.94736 1.25977 0.95870 0.97745 0.99509 1.70057 1.14182 1.47172 1.27641 0.85627 0.80009 0.79193 0.77616 1.19160 1.20819 1.17432 1.21472 0.96038 0.97224 1.08732 1.21141 0.93080 0.98794 0.97599 0.90894 0.90797 0.90747 0.83546 0.85289 0.89886 0.91731 0.92281 0.90555 0.93369 0.83956 0.96211 0.92180 0.96116 0.96722 0.92417 0.84563 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.23 0.71 -0.42 16 2 C -0.14 -2.33 5.88 -19.85 -0.12 -2.45 16 3 C -0.09 -1.57 9.69 22.26 0.22 -1.36 16 4 C -0.17 -3.78 9.99 22.37 0.22 -3.55 16 5 C 0.11 2.65 6.69 22.50 0.15 2.80 16 6 O -0.32 -8.43 9.20 -92.42 -0.85 -9.28 16 7 C 0.08 1.74 4.58 71.98 0.33 2.07 16 8 C 0.08 2.13 2.99 44.92 0.13 2.27 16 9 H 0.10 2.46 7.80 -2.39 -0.02 2.44 16 10 C -0.17 -4.09 8.96 71.98 0.65 -3.45 16 11 N -0.69 -22.83 6.20 -491.57 -3.05 -25.88 16 12 C 0.09 3.49 5.42 86.30 0.47 3.96 16 13 C -0.01 -0.25 4.30 29.85 0.13 -0.12 16 14 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 15 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 16 C 0.01 0.35 5.47 84.65 0.46 0.82 16 17 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 18 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 22 C -0.22 -4.51 9.04 22.36 0.20 -4.30 16 23 C -0.09 -1.57 9.69 22.25 0.22 -1.35 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.07 0.64 8.08 -2.38 -0.02 0.62 16 27 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.08 1.47 7.66 -2.39 -0.02 1.45 16 30 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 31 H 0.06 1.47 7.55 -2.39 -0.02 1.46 16 32 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 33 H 0.05 1.24 7.46 -2.38 -0.02 1.23 16 34 H 0.34 11.37 8.47 -89.69 -0.76 10.61 16 35 H 0.02 0.80 7.44 -2.39 -0.02 0.78 16 36 H 0.06 2.43 8.06 -2.38 -0.02 2.42 16 37 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 38 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.14 2.45 6.30 -2.91 -0.02 2.43 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -68.27 336.04 2.49 -65.79 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.18 Total: 18.20 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.02 Total: -36.22 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.75 Total: -86.00 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.85 Total: -9.28 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -68.27 2.49 -65.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.416 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds