Wall clock time and date at job start Mon Mar 30 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47154 * 2 1 4 4 C 1.52997 * 109.47231 * 239.99963 * 2 1 3 5 5 C 1.53000 * 109.47026 * 120.00099 * 2 1 3 6 6 H 1.09001 * 109.47545 * 180.02562 * 5 2 1 7 7 C 1.53007 * 109.47082 * 299.99982 * 5 2 1 8 8 N 1.46895 * 109.46918 * 184.99990 * 7 5 2 9 9 O 1.42902 * 109.47262 * 59.99960 * 5 2 1 10 10 C 1.35671 * 117.00070 * 148.06533 * 9 5 2 11 11 C 1.39316 * 119.81786 * 178.56338 * 10 9 5 12 12 C 1.36443 * 120.18314 * 180.30251 * 11 10 9 13 13 C 1.40839 * 119.81011 * 359.42802 * 12 11 10 14 14 C 1.41206 * 120.17488 * 180.30079 * 13 12 11 15 15 H 1.08000 * 120.00635 * 335.43835 * 14 13 12 16 16 C 1.39892 * 120.00206 * 155.44299 * 14 13 12 17 17 N 1.30886 * 119.99472 * 342.46224 * 16 14 13 18 18 Si 1.86793 * 120.00586 * 162.45987 * 16 14 13 19 19 H 1.48502 * 109.47467 * 94.59789 * 18 16 14 20 20 H 1.48500 * 109.47384 * 214.60388 * 18 16 14 21 21 H 1.48502 * 109.46931 * 334.60019 * 18 16 14 22 22 C 1.40825 * 119.64019 * 0.27606 * 13 12 11 23 23 C 1.36440 * 119.81842 * 0.02562 * 22 13 12 24 24 H 1.08992 * 109.47293 * 299.99816 * 1 2 3 25 25 H 1.09002 * 109.47105 * 60.00309 * 1 2 3 26 26 H 1.08999 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47467 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47745 * 299.99829 * 3 2 1 29 29 H 1.09003 * 109.47338 * 59.99874 * 3 2 1 30 30 H 1.08999 * 109.47331 * 300.00231 * 4 2 1 31 31 H 1.08996 * 109.47500 * 60.00258 * 4 2 1 32 32 H 1.09003 * 109.47400 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46672 * 304.99936 * 7 5 2 34 34 H 1.08999 * 109.46586 * 64.99837 * 7 5 2 35 35 H 1.00905 * 110.99675 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00578 * 303.95254 * 8 7 5 37 37 H 1.07999 * 119.90962 * 0.02777 * 11 10 9 38 38 H 1.07995 * 120.08966 * 179.70236 * 12 11 10 39 39 H 0.97005 * 119.99696 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.09405 * 180.02562 * 22 13 12 41 41 H 1.07998 * 119.90901 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2496 7 6 1.5299 0.0000 2.4985 8 7 2.1157 -0.6193 3.6949 9 8 1.5636 -2.0686 1.2492 10 6 2.3640 -3.0048 1.8180 11 6 1.9439 -4.3319 1.8770 12 6 2.7402 -5.2785 2.4528 13 6 3.9950 -4.9129 2.9775 14 6 4.8280 -5.8875 3.5694 15 1 4.3972 -6.7878 3.9819 16 6 6.2115 -5.6868 3.6217 17 7 6.7734 -4.7968 2.8436 18 14 7.2569 -6.6887 4.8017 19 1 7.8042 -7.8741 4.0941 20 1 8.3759 -5.8520 5.3045 21 1 6.4215 -7.1368 5.9448 22 6 4.4147 -3.5704 2.9082 23 6 3.6038 -2.6349 2.3347 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.8184 1.0503 2.4548 34 1 0.4436 -0.0769 2.5443 35 1 1.7943 -0.1601 4.5339 36 1 1.9166 -1.6081 3.7246 37 1 0.9835 -4.6113 1.4699 38 1 2.4110 -6.3058 2.5021 39 1 7.7328 -4.6579 2.8796 40 1 5.3757 -3.2821 3.3079 41 1 3.9243 -1.6051 2.2803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043295409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:10 Heat of formation + Delta-G solvation = -31.586388 kcal Electronic energy + Delta-G solvation = -20512.716738 eV Core-core repulsion = 17585.099421 eV Total energy + Delta-G solvation = -2927.617317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62698 -37.33237 -35.48354 -33.59489 -33.17638 -29.51906 -29.14356 -27.54791 -27.21366 -26.74150 -24.63661 -22.44074 -21.09227 -20.40806 -18.29128 -17.32717 -16.94864 -16.06515 -15.36009 -15.04659 -14.29610 -14.03535 -13.92390 -13.77514 -13.37837 -13.02037 -12.88147 -12.58725 -12.20770 -12.11121 -11.94943 -11.77643 -11.60517 -11.41531 -11.20835 -11.07546 -10.98428 -10.72333 -10.66211 -10.36563 -10.16585 -9.78982 -9.65322 -9.21638 -8.90697 -8.27463 -7.51855 -6.90896 -6.65733 -4.18412 2.83456 3.06924 3.11606 3.15879 3.26877 3.99542 4.13583 4.68543 4.68781 4.91073 5.12553 5.14352 5.39768 5.53442 5.64167 5.67049 5.75491 5.80019 5.80329 5.92615 5.99900 6.02345 6.13911 6.21147 6.27287 6.33573 6.41782 6.52697 6.56411 6.84751 7.02553 7.14607 7.38098 7.45387 7.51784 7.65516 7.79474 8.04819 8.09215 8.25215 8.53960 8.75292 8.97468 9.08448 10.27925 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031983 B = 0.004821 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.259222 B = 5806.015571 C = 5894.873706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.138 4.138 5 C 0.096 3.904 6 H 0.080 0.920 7 C 0.041 3.959 8 N -0.848 5.848 9 O -0.321 6.321 10 C -0.015 4.015 11 C -0.116 4.116 12 C -0.202 4.202 13 C 0.088 3.912 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.133 4.133 23 C -0.155 4.155 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.331 0.669 36 H 0.355 0.645 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.278 0.722 40 H 0.120 0.880 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 9.677 -2.787 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.196 4.196 5 C 0.039 3.961 6 H 0.098 0.902 7 C -0.090 4.090 8 N -0.380 5.380 9 O -0.237 6.237 10 C -0.058 4.058 11 C -0.135 4.135 12 C -0.222 4.222 13 C 0.086 3.914 14 C -0.494 4.494 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.426 5.426 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.153 4.153 23 C -0.174 4.174 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.142 0.858 36 H 0.171 0.829 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.137 0.863 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.261 9.949 -3.245 12.195 hybrid contribution -0.173 -0.564 0.816 1.007 sum -6.434 9.384 -2.429 11.635 Atomic orbital electron populations 1.21843 0.94393 1.02443 1.00812 1.20593 0.96259 0.94762 0.94811 1.21935 1.01329 0.94977 1.01721 1.21793 1.00933 1.01087 0.95749 1.22225 0.99593 0.81668 0.92634 0.90236 1.22412 0.96633 0.98544 0.91384 1.58883 1.65968 1.09385 1.03728 1.85844 1.45418 1.15212 1.77215 1.18588 0.92287 0.88501 1.06422 1.19581 0.99344 0.90525 1.04061 1.20537 0.97867 0.97001 1.06804 1.17597 0.91207 0.92488 0.90126 1.19455 0.91063 1.04724 1.34190 0.90714 1.25849 0.98771 0.95022 0.94448 1.69849 1.12321 1.29685 1.30758 0.86368 0.79426 0.79978 0.81321 1.19736 1.20157 1.18553 1.20954 0.99846 0.92149 1.02346 1.20707 0.94193 0.99081 1.03419 0.92914 0.93246 0.91754 0.92386 0.92383 0.92382 0.91608 0.93095 0.92792 0.90680 0.95248 0.85751 0.82875 0.89010 0.88597 0.91105 0.86269 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.98 37.16 0.30 -1.39 16 2 C -0.06 -0.84 0.63 -154.51 -0.10 -0.94 16 3 C -0.14 -1.56 8.13 37.15 0.30 -1.26 16 4 C -0.14 -1.90 8.33 37.16 0.31 -1.59 16 5 C 0.10 1.56 1.47 -26.73 -0.04 1.52 16 6 H 0.08 1.45 5.49 -51.93 -0.29 1.16 16 7 C 0.04 0.60 5.77 -3.82 -0.02 0.58 16 8 N -0.85 -13.52 8.32 -10.37 -0.09 -13.60 16 9 O -0.32 -6.24 8.33 -18.71 -0.16 -6.40 16 10 C -0.01 -0.33 5.45 -38.78 -0.21 -0.54 16 11 C -0.12 -2.68 9.92 -39.83 -0.40 -3.07 16 12 C -0.20 -4.99 9.74 -39.25 -0.38 -5.38 16 13 C 0.09 2.35 5.58 -106.81 -0.60 1.76 16 14 C -0.46 -12.43 9.04 -37.84 -0.34 -12.78 16 15 H 0.07 1.93 7.90 -52.49 -0.41 1.51 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.80 -20.99 10.93 55.55 0.61 -20.38 16 18 Si 0.90 18.94 29.59 -169.99 -5.03 13.91 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.13 -3.47 8.64 -39.25 -0.34 -3.80 16 23 C -0.16 -3.60 7.19 -39.83 -0.29 -3.89 16 24 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.59 6.32 -51.93 -0.33 0.26 16 30 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.96 6.17 -51.93 -0.32 0.64 16 34 H 0.03 0.42 6.71 -51.93 -0.35 0.07 16 35 H 0.33 4.41 9.08 -39.29 -0.36 4.05 16 36 H 0.36 6.51 6.36 -39.29 -0.25 6.26 16 37 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.12 3.24 6.14 -52.49 -0.32 2.92 16 41 H 0.11 2.37 5.25 -52.49 -0.28 2.09 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -27.30 317.96 -7.90 -35.20 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -6.13 Total: 15.43 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -1.89 Total: -28.95 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.52 Total: -33.98 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.16 Total: -6.40 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.30 -7.90 -35.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043295409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.610 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds