Wall clock time and date at job start Mon Mar 30 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47154 * 2 1 4 4 C 1.52997 * 109.47231 * 239.99963 * 2 1 3 5 5 C 1.53000 * 109.47026 * 120.00099 * 2 1 3 6 6 H 1.09001 * 109.47545 * 180.02562 * 5 2 1 7 7 C 1.53007 * 109.47082 * 299.99982 * 5 2 1 8 8 N 1.46895 * 109.46918 * 184.99990 * 7 5 2 9 9 O 1.42902 * 109.47262 * 59.99960 * 5 2 1 10 10 C 1.35671 * 117.00070 * 148.06533 * 9 5 2 11 11 C 1.39316 * 119.81786 * 178.56338 * 10 9 5 12 12 C 1.36443 * 120.18314 * 180.30251 * 11 10 9 13 13 C 1.40839 * 119.81011 * 359.42802 * 12 11 10 14 14 C 1.41206 * 120.17488 * 180.30079 * 13 12 11 15 15 H 1.08000 * 120.00635 * 335.43835 * 14 13 12 16 16 C 1.39892 * 120.00206 * 155.44299 * 14 13 12 17 17 N 1.30886 * 119.99472 * 342.46224 * 16 14 13 18 18 Si 1.86793 * 120.00586 * 162.45987 * 16 14 13 19 19 H 1.48502 * 109.47467 * 94.59789 * 18 16 14 20 20 H 1.48500 * 109.47384 * 214.60388 * 18 16 14 21 21 H 1.48502 * 109.46931 * 334.60019 * 18 16 14 22 22 C 1.40825 * 119.64019 * 0.27606 * 13 12 11 23 23 C 1.36440 * 119.81842 * 0.02562 * 22 13 12 24 24 H 1.08992 * 109.47293 * 299.99816 * 1 2 3 25 25 H 1.09002 * 109.47105 * 60.00309 * 1 2 3 26 26 H 1.08999 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47467 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47745 * 299.99829 * 3 2 1 29 29 H 1.09003 * 109.47338 * 59.99874 * 3 2 1 30 30 H 1.08999 * 109.47331 * 300.00231 * 4 2 1 31 31 H 1.08996 * 109.47500 * 60.00258 * 4 2 1 32 32 H 1.09003 * 109.47400 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46672 * 304.99936 * 7 5 2 34 34 H 1.08999 * 109.46586 * 64.99837 * 7 5 2 35 35 H 1.00905 * 110.99675 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00578 * 303.95254 * 8 7 5 37 37 H 1.07999 * 119.90962 * 0.02777 * 11 10 9 38 38 H 1.07995 * 120.08966 * 179.70236 * 12 11 10 39 39 H 0.97005 * 119.99696 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.09405 * 180.02562 * 22 13 12 41 41 H 1.07998 * 119.90901 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2496 7 6 1.5299 0.0000 2.4985 8 7 2.1157 -0.6193 3.6949 9 8 1.5636 -2.0686 1.2492 10 6 2.3640 -3.0048 1.8180 11 6 1.9439 -4.3319 1.8770 12 6 2.7402 -5.2785 2.4528 13 6 3.9950 -4.9129 2.9775 14 6 4.8280 -5.8875 3.5694 15 1 4.3972 -6.7878 3.9819 16 6 6.2115 -5.6868 3.6217 17 7 6.7734 -4.7968 2.8436 18 14 7.2569 -6.6887 4.8017 19 1 7.8042 -7.8741 4.0941 20 1 8.3759 -5.8520 5.3045 21 1 6.4215 -7.1368 5.9448 22 6 4.4147 -3.5704 2.9082 23 6 3.6038 -2.6349 2.3347 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.8184 1.0503 2.4548 34 1 0.4436 -0.0769 2.5443 35 1 1.7943 -0.1601 4.5339 36 1 1.9166 -1.6081 3.7246 37 1 0.9835 -4.6113 1.4699 38 1 2.4110 -6.3058 2.5021 39 1 7.7328 -4.6579 2.8796 40 1 5.3757 -3.2821 3.3079 41 1 3.9243 -1.6051 2.2803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043295409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:09 Heat of formation + Delta-G solvation = -47.048951 kcal Electronic energy + Delta-G solvation = -20513.387245 eV Core-core repulsion = 17585.099421 eV Total energy + Delta-G solvation = -2928.287824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12228 -38.96268 -36.99573 -35.09297 -34.80004 -31.42410 -31.00656 -28.75982 -28.16622 -27.94598 -26.47477 -23.84771 -22.90795 -22.07396 -19.57122 -19.22306 -18.64294 -17.33974 -17.00984 -16.47154 -15.88975 -15.62574 -15.23597 -14.94314 -14.82373 -14.49032 -14.43275 -14.08638 -13.79977 -13.55445 -13.40669 -13.01603 -12.91121 -12.82242 -12.68630 -12.61542 -12.39804 -12.28715 -11.88276 -11.68026 -11.62131 -11.51139 -11.20582 -11.00153 -10.71882 -9.53472 -9.43368 -8.80191 -8.54561 -6.17370 1.01731 1.13241 1.39980 1.51193 1.56503 2.24518 2.67090 2.78152 3.51380 3.75172 3.83865 3.97563 4.06242 4.22331 4.39407 4.45232 4.51431 4.52543 4.68559 4.76068 4.79347 4.89828 4.92672 5.00664 5.05540 5.07295 5.15685 5.19131 5.21647 5.30646 5.44534 5.48290 5.51751 5.63107 5.75299 6.10942 6.12972 6.20112 6.31819 6.56404 6.63499 6.89118 7.00739 7.19471 8.40602 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031983 B = 0.004821 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.259222 B = 5806.015571 C = 5894.873706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.089 3.911 6 H 0.058 0.942 7 C 0.045 3.955 8 N -0.860 5.860 9 O -0.322 6.322 10 C 0.005 3.995 11 C -0.125 4.125 12 C -0.210 4.210 13 C 0.056 3.944 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.833 5.833 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.346 0.654 36 H 0.340 0.660 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.285 0.715 40 H 0.100 0.900 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 11.168 -3.036 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.032 3.968 6 H 0.075 0.925 7 C -0.086 4.086 8 N -0.392 5.392 9 O -0.237 6.237 10 C -0.039 4.039 11 C -0.143 4.143 12 C -0.230 4.230 13 C 0.054 3.946 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.461 5.461 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.172 4.172 23 C -0.168 4.168 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.145 11.470 -3.501 13.960 hybrid contribution -0.028 -0.890 0.790 1.191 sum -7.172 10.580 -2.711 13.067 Atomic orbital electron populations 1.21816 0.93252 1.01627 1.02441 1.20645 0.97123 0.95730 0.92697 1.21924 1.01066 0.93211 1.03392 1.21802 1.00267 1.00149 0.97370 1.22560 0.98527 0.80289 0.95379 0.92455 1.22445 0.96992 0.99298 0.89840 1.58878 1.66601 1.08543 1.05131 1.85857 1.44907 1.16468 1.76502 1.18608 0.91740 0.89046 1.04471 1.19830 1.00074 0.90661 1.03779 1.20715 0.97555 0.97921 1.06763 1.17909 0.92362 0.92988 0.91352 1.19701 0.92293 1.05215 1.35968 0.90893 1.26682 0.99513 0.96123 0.95572 1.69909 1.13002 1.31171 1.31978 0.85249 0.77536 0.78452 0.78789 1.18886 1.19223 1.18315 1.20868 0.99769 0.92697 1.03888 1.20734 0.94254 0.99031 1.02766 0.91921 0.91039 0.93771 0.92892 0.90278 0.91194 0.94007 0.90525 0.93853 0.88277 0.94349 0.84103 0.84625 0.86794 0.87795 0.90454 0.88171 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 7.98 71.98 0.57 -2.32 16 2 C -0.06 -1.48 0.63 -52.18 -0.03 -1.51 16 3 C -0.14 -2.58 8.13 71.98 0.59 -1.99 16 4 C -0.14 -3.60 8.33 71.98 0.60 -3.00 16 5 C 0.09 2.77 1.47 30.60 0.04 2.82 16 6 H 0.06 2.06 5.49 -2.39 -0.01 2.04 16 7 C 0.04 1.21 5.77 86.31 0.50 1.70 16 8 N -0.86 -26.43 8.32 -186.72 -1.55 -27.98 16 9 O -0.32 -12.24 8.33 -89.87 -0.75 -12.99 16 10 C 0.01 0.23 5.45 22.79 0.12 0.36 16 11 C -0.12 -5.73 9.92 22.11 0.22 -5.51 16 12 C -0.21 -10.56 9.74 22.49 0.22 -10.34 16 13 C 0.06 3.09 5.58 -21.28 -0.12 2.97 16 14 C -0.50 -27.78 9.04 23.40 0.21 -27.56 16 15 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 16 C 0.03 1.79 5.14 85.23 0.44 2.23 16 17 N -0.83 -44.99 10.93 21.82 0.24 -44.75 16 18 Si 0.98 39.35 29.59 68.60 2.03 41.38 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 C -0.15 -8.21 8.64 22.48 0.19 -8.02 16 23 C -0.15 -7.04 7.19 22.11 0.16 -6.88 16 24 H 0.06 1.23 6.54 -2.39 -0.02 1.21 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.14 6.32 -2.39 -0.02 1.12 16 30 H 0.04 1.27 7.68 -2.39 -0.02 1.25 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 2.21 6.17 -2.39 -0.01 2.20 16 34 H 0.04 0.98 6.71 -2.39 -0.02 0.97 16 35 H 0.35 8.70 9.08 -89.69 -0.81 7.89 16 36 H 0.34 12.32 6.36 -89.69 -0.57 11.74 16 37 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.29 13.95 8.30 -92.70 -0.77 13.18 16 40 H 0.10 5.71 6.14 -2.91 -0.02 5.69 16 41 H 0.12 5.23 5.25 -2.91 -0.02 5.21 16 Total: -1.00 -60.17 317.96 3.34 -56.84 By element: Atomic # 1 Polarization: 44.92 SS G_CDS: -0.34 Total: 44.57 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 3.72 Total: -57.07 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.31 Total: -72.73 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.75 Total: -12.99 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -60.17 3.34 -56.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043295409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.786 kcal (2) G-P(sol) polarization free energy of solvation -60.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds