Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38150 * 120.02748 * 2 1 4 4 C 1.38258 * 120.05641 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.94730 * 180.02562 * 4 3 2 6 6 N 1.46905 * 109.47110 * 89.99807 * 5 4 3 7 7 C 1.38271 * 120.11197 * 0.29426 * 4 3 2 8 8 C 1.38151 * 120.05140 * 359.45085 * 7 4 3 9 9 C 1.50701 * 120.02511 * 180.29993 * 8 7 4 10 10 C 1.38728 * 120.02748 * 180.02562 * 2 1 3 11 11 O 1.35902 * 120.05793 * 359.97438 * 10 2 1 12 12 C 1.42899 * 116.99582 * 89.99996 * 11 10 2 13 13 C 1.53009 * 109.46688 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46822 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46964 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99764 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00098 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00199 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99891 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47275 * 90.00476 * 19 17 15 21 21 H 1.48498 * 109.47373 * 210.00507 * 19 17 15 22 22 H 1.48501 * 109.47289 * 330.00641 * 19 17 15 23 23 H 1.09005 * 109.46724 * 89.99968 * 1 2 3 24 24 H 1.08994 * 109.47428 * 210.00050 * 1 2 3 25 25 H 1.08998 * 109.47139 * 330.00657 * 1 2 3 26 26 H 1.08000 * 119.97219 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47000 * 329.99804 * 5 4 3 28 28 H 1.08995 * 109.47308 * 209.99944 * 5 4 3 29 29 H 1.00901 * 110.99869 * 180.02562 * 6 5 4 30 30 H 1.00896 * 110.99543 * 303.95619 * 6 5 4 31 31 H 1.07997 * 119.97295 * 179.70659 * 7 4 3 32 32 H 1.09007 * 109.46764 * 270.22874 * 9 8 7 33 33 H 1.08996 * 109.47399 * 30.22896 * 9 8 7 34 34 H 1.08997 * 109.47009 * 150.22975 * 9 8 7 35 35 H 1.09000 * 109.47426 * 299.99913 * 12 11 10 36 36 H 1.08998 * 109.47281 * 60.00786 * 12 11 10 37 37 H 1.08996 * 109.47289 * 300.00640 * 13 12 11 38 38 H 1.08998 * 109.46559 * 60.00417 * 13 12 11 39 39 H 1.09003 * 109.47133 * 300.00508 * 14 13 12 40 40 H 1.09001 * 109.46815 * 60.00448 * 14 13 12 41 41 H 0.97003 * 120.00246 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.3326 2.5029 0.0011 6 7 4.5762 2.9271 1.3863 7 6 4.2753 0.0010 -0.0051 8 6 3.5886 -1.1977 0.0002 9 6 4.3459 -2.5006 0.0010 10 6 2.2013 -1.2011 -0.0005 11 8 1.5235 -2.3790 -0.0005 12 6 1.1995 -2.9410 -1.2738 13 6 0.4437 -4.2562 -1.0733 14 6 0.0962 -4.8576 -2.4366 15 6 -0.6488 -6.1526 -2.2392 16 1 -0.8542 -6.5106 -1.2413 17 6 -1.0681 -6.8803 -3.3326 18 7 -1.7186 -8.0101 -3.1604 19 14 -0.7133 -6.2606 -5.0588 20 1 0.5945 -6.7943 -5.5173 21 1 -1.7849 -6.7186 -5.9792 22 1 -0.6673 -4.7764 -5.0522 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6584 2.1314 0.0004 27 1 3.7426 3.2618 -0.5128 28 1 5.2854 2.3741 -0.5123 29 1 5.0790 3.8015 1.4136 30 1 3.7115 2.9912 1.9022 31 1 5.3552 0.0042 -0.0094 32 1 4.5286 -2.8152 -1.0266 33 1 5.2979 -2.3673 0.5148 34 1 3.7590 -3.2617 0.5151 35 1 0.5740 -2.2432 -1.8305 36 1 2.1168 -3.1310 -1.8312 37 1 1.0695 -4.9537 -0.5168 38 1 -0.4735 -4.0666 -0.5158 39 1 -0.5298 -4.1597 -2.9927 40 1 1.0133 -5.0470 -2.9945 41 1 -2.0139 -8.5219 -3.9297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = -41.873220 kcal Electronic energy + Delta-G solvation = -19372.250142 eV Core-core repulsion = 16444.186754 eV Total energy + Delta-G solvation = -2928.063387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26577 -37.72491 -34.99028 -33.91009 -33.60473 -31.83144 -30.68775 -27.83637 -26.80535 -26.74341 -24.76183 -22.80783 -21.00020 -20.54818 -20.16846 -17.52428 -16.79280 -16.74451 -16.25214 -15.17693 -14.85159 -14.59888 -14.22462 -14.16142 -14.01391 -13.29939 -13.18376 -13.08326 -12.96864 -12.68809 -12.59185 -12.43672 -11.88212 -11.81629 -11.44708 -11.31045 -11.24164 -10.88094 -10.77192 -10.11618 -9.94243 -9.72569 -9.46774 -9.22273 -9.10106 -8.62100 -8.55862 -8.35730 -6.05803 -4.04346 1.13644 1.29582 3.29070 3.36302 3.37759 3.39556 4.06046 4.39343 4.43221 4.57846 4.67108 4.76262 5.05338 5.14264 5.27533 5.29684 5.38683 5.47165 5.50414 5.59786 5.63096 5.66153 5.66926 5.74928 5.80935 5.94866 6.09630 6.27436 6.34958 6.42359 6.47063 6.49017 6.59982 6.71352 6.82351 6.82483 7.05804 7.25145 7.36676 7.72133 7.84195 8.52212 8.99364 9.55915 11.07577 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.003580 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.786368 B = 7820.328677 C = 7956.893053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.094 4.094 5 C 0.105 3.895 6 N -0.846 5.846 7 C -0.094 4.094 8 C -0.101 4.101 9 C -0.114 4.114 10 C 0.105 3.895 11 O -0.335 6.335 12 C 0.069 3.931 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.520 4.520 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.341 0.659 30 H 0.343 0.657 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 22.049 5.812 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.130 4.130 4 C -0.095 4.095 5 C -0.025 4.025 6 N -0.376 5.376 7 C -0.112 4.112 8 C -0.101 4.101 9 C -0.170 4.170 10 C 0.060 3.940 11 O -0.252 6.252 12 C -0.005 4.005 13 C -0.137 4.137 14 C -0.047 4.047 15 C -0.558 4.558 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.854 21.119 5.916 24.930 hybrid contribution -0.404 1.150 -1.419 1.871 sum 11.449 22.269 4.497 25.440 Atomic orbital electron populations 1.20713 0.90599 1.03173 1.02493 1.20195 0.96792 0.92365 1.00781 1.20724 0.93308 0.97002 1.01940 1.19653 0.93283 0.94727 1.01787 1.20645 0.99098 0.92877 0.89904 1.58710 1.27734 1.37795 1.13364 1.20730 0.99530 0.90732 1.00250 1.20255 0.93141 0.96144 1.00605 1.20718 0.99471 0.94334 1.02496 1.18455 0.89475 0.85687 1.00338 1.85996 1.74311 1.34157 1.30751 1.23050 0.98647 0.95987 0.82830 1.21488 0.99207 0.92371 1.00627 1.19511 0.96352 0.96701 0.92148 1.21083 1.35466 1.04142 0.95100 0.90835 1.25021 0.94618 0.94660 0.99164 1.69909 1.38941 1.14509 1.30761 0.86784 0.78127 0.79761 0.84645 1.20245 1.21321 1.19060 0.91268 0.90416 0.91780 0.86317 0.94772 0.90273 0.84612 0.84485 0.85864 0.91254 0.91619 0.90452 0.93471 0.93445 0.91768 0.91774 0.96509 0.96927 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.79 36.01 0.35 -1.01 16 2 C -0.10 -1.34 5.89 -104.47 -0.62 -1.96 16 3 C -0.11 -1.25 9.35 -39.61 -0.37 -1.62 16 4 C -0.09 -1.02 5.39 -104.60 -0.56 -1.59 16 5 C 0.10 0.86 6.91 -4.97 -0.03 0.82 16 6 N -0.85 -6.39 9.61 -11.41 -0.11 -6.50 16 7 C -0.09 -1.11 9.35 -39.60 -0.37 -1.48 16 8 C -0.10 -1.37 5.89 -104.47 -0.62 -1.99 16 9 C -0.11 -1.40 9.79 36.01 0.35 -1.05 16 10 C 0.10 1.57 5.67 -39.22 -0.22 1.35 16 11 O -0.33 -5.64 8.15 -19.43 -0.16 -5.80 16 12 C 0.07 1.18 6.06 37.16 0.23 1.41 16 13 C -0.10 -2.01 5.52 -26.72 -0.15 -2.16 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 16 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 19 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 25 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 28 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.34 1.81 9.08 -39.29 -0.36 1.46 16 30 H 0.34 2.43 8.98 -39.29 -0.35 2.08 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -31.48 340.24 -8.50 -39.98 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.91 Total: 0.33 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.55 Total: -23.00 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.66 Total: -33.65 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.16 Total: -5.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.48 -8.50 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.897 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds