Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38150 * 120.02748 * 2 1 4 4 C 1.38258 * 120.05641 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.94730 * 180.02562 * 4 3 2 6 6 N 1.46905 * 109.47110 * 89.99807 * 5 4 3 7 7 C 1.38271 * 120.11197 * 0.29426 * 4 3 2 8 8 C 1.38151 * 120.05140 * 359.45085 * 7 4 3 9 9 C 1.50701 * 120.02511 * 180.29993 * 8 7 4 10 10 C 1.38728 * 120.02748 * 180.02562 * 2 1 3 11 11 O 1.35902 * 120.05793 * 359.97438 * 10 2 1 12 12 C 1.42899 * 116.99582 * 89.99996 * 11 10 2 13 13 C 1.53009 * 109.46688 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46822 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46964 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99764 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00098 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00199 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99891 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47275 * 90.00476 * 19 17 15 21 21 H 1.48498 * 109.47373 * 210.00507 * 19 17 15 22 22 H 1.48501 * 109.47289 * 330.00641 * 19 17 15 23 23 H 1.09005 * 109.46724 * 89.99968 * 1 2 3 24 24 H 1.08994 * 109.47428 * 210.00050 * 1 2 3 25 25 H 1.08998 * 109.47139 * 330.00657 * 1 2 3 26 26 H 1.08000 * 119.97219 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47000 * 329.99804 * 5 4 3 28 28 H 1.08995 * 109.47308 * 209.99944 * 5 4 3 29 29 H 1.00901 * 110.99869 * 180.02562 * 6 5 4 30 30 H 1.00896 * 110.99543 * 303.95619 * 6 5 4 31 31 H 1.07997 * 119.97295 * 179.70659 * 7 4 3 32 32 H 1.09007 * 109.46764 * 270.22874 * 9 8 7 33 33 H 1.08996 * 109.47399 * 30.22896 * 9 8 7 34 34 H 1.08997 * 109.47009 * 150.22975 * 9 8 7 35 35 H 1.09000 * 109.47426 * 299.99913 * 12 11 10 36 36 H 1.08998 * 109.47281 * 60.00786 * 12 11 10 37 37 H 1.08996 * 109.47289 * 300.00640 * 13 12 11 38 38 H 1.08998 * 109.46559 * 60.00417 * 13 12 11 39 39 H 1.09003 * 109.47133 * 300.00508 * 14 13 12 40 40 H 1.09001 * 109.46815 * 60.00448 * 14 13 12 41 41 H 0.97003 * 120.00246 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.3326 2.5029 0.0011 6 7 4.5762 2.9271 1.3863 7 6 4.2753 0.0010 -0.0051 8 6 3.5886 -1.1977 0.0002 9 6 4.3459 -2.5006 0.0010 10 6 2.2013 -1.2011 -0.0005 11 8 1.5235 -2.3790 -0.0005 12 6 1.1995 -2.9410 -1.2738 13 6 0.4437 -4.2562 -1.0733 14 6 0.0962 -4.8576 -2.4366 15 6 -0.6488 -6.1526 -2.2392 16 1 -0.8542 -6.5106 -1.2413 17 6 -1.0681 -6.8803 -3.3326 18 7 -1.7186 -8.0101 -3.1604 19 14 -0.7133 -6.2606 -5.0588 20 1 0.5945 -6.7943 -5.5173 21 1 -1.7849 -6.7186 -5.9792 22 1 -0.6673 -4.7764 -5.0522 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6584 2.1314 0.0004 27 1 3.7426 3.2618 -0.5128 28 1 5.2854 2.3741 -0.5123 29 1 5.0790 3.8015 1.4136 30 1 3.7115 2.9912 1.9022 31 1 5.3552 0.0042 -0.0094 32 1 4.5286 -2.8152 -1.0266 33 1 5.2979 -2.3673 0.5148 34 1 3.7590 -3.2617 0.5151 35 1 0.5740 -2.2432 -1.8305 36 1 2.1168 -3.1310 -1.8312 37 1 1.0695 -4.9537 -0.5168 38 1 -0.4735 -4.0666 -0.5158 39 1 -0.5298 -4.1597 -2.9927 40 1 1.0133 -5.0470 -2.9945 41 1 -2.0139 -8.5219 -3.9297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = -61.547736 kcal Electronic energy + Delta-G solvation = -19373.103293 eV Core-core repulsion = 16444.186754 eV Total energy + Delta-G solvation = -2928.916538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27429 -38.81862 -36.15761 -35.40701 -34.54237 -33.79501 -31.59790 -29.43786 -27.94964 -27.65475 -25.69633 -24.48471 -22.02254 -21.93964 -21.39923 -19.02660 -18.54328 -17.78631 -16.94143 -16.44977 -16.15000 -16.04848 -15.45691 -15.08389 -15.01838 -14.72966 -14.37261 -14.23811 -14.11340 -13.92611 -13.68587 -13.62528 -13.31507 -12.90854 -12.73459 -12.67237 -12.29246 -12.21806 -12.06710 -11.86125 -11.69601 -11.63776 -11.34438 -10.78239 -10.74175 -9.67863 -9.53473 -9.31749 -8.30518 -6.35864 0.16692 0.36929 1.36044 1.38052 1.49984 2.35541 2.37690 2.95089 3.04407 3.73736 3.79640 3.81813 3.97082 4.06422 4.21610 4.31524 4.35563 4.42577 4.45292 4.51955 4.63867 4.66539 4.71594 4.75065 4.79040 4.79839 4.87875 4.94253 4.99840 5.17672 5.33438 5.40638 5.44582 5.50352 5.56888 5.61651 5.63698 5.86300 6.20467 6.26064 6.60239 6.63992 6.72933 7.28556 8.86437 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.003580 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.786368 B = 7820.328677 C = 7956.893053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 C -0.110 4.110 4 C -0.088 4.088 5 C 0.107 3.893 6 N -0.855 5.855 7 C -0.100 4.100 8 C -0.112 4.112 9 C -0.112 4.112 10 C 0.067 3.933 11 O -0.347 6.347 12 C 0.081 3.919 13 C -0.091 4.091 14 C -0.005 4.005 15 C -0.536 4.536 16 H 0.030 0.970 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.244 1.244 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.355 0.645 30 H 0.345 0.655 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 25.247 4.586 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.129 4.129 4 C -0.088 4.088 5 C -0.023 4.023 6 N -0.387 5.387 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.168 4.168 10 C 0.024 3.976 11 O -0.265 6.265 12 C 0.007 3.993 13 C -0.129 4.129 14 C -0.043 4.043 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.167 1.167 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.163 0.837 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.446 24.344 4.714 28.207 hybrid contribution -0.875 0.188 -0.898 1.268 sum 12.571 24.532 3.815 27.828 Atomic orbital electron populations 1.20712 0.90127 1.03304 1.02665 1.20410 0.97396 0.92563 1.00785 1.21011 0.93696 0.97210 1.00956 1.20028 0.93417 0.95703 0.99675 1.20652 0.99354 0.91741 0.90533 1.58675 1.28127 1.38900 1.12978 1.20980 1.00450 0.90471 0.99941 1.20438 0.92830 0.97209 1.00806 1.20711 0.99944 0.93519 1.02673 1.18752 0.90232 0.85398 1.03221 1.85960 1.74879 1.35476 1.30196 1.22723 0.98593 0.94430 0.83553 1.21264 0.99103 0.94000 0.98546 1.19417 0.96128 0.94513 0.94195 1.21425 1.36117 1.06345 0.93456 0.95158 1.26054 0.94210 0.94682 1.04406 1.70070 1.40447 1.16214 1.32451 0.85615 0.78371 0.80348 0.78068 1.18959 1.20865 1.16731 0.91035 0.92486 0.89438 0.83746 0.93193 0.89574 0.83093 0.84217 0.84212 0.90950 0.89677 0.92426 0.92697 0.92695 0.92812 0.92801 0.95633 0.95768 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.79 71.24 0.70 -1.85 16 2 C -0.11 -2.80 5.89 -19.77 -0.12 -2.92 16 3 C -0.11 -2.19 9.35 22.25 0.21 -1.98 16 4 C -0.09 -1.66 5.39 -19.85 -0.11 -1.77 16 5 C 0.11 1.38 6.91 85.56 0.59 1.97 16 6 N -0.85 -10.26 9.61 -190.00 -1.83 -12.09 16 7 C -0.10 -2.15 9.35 22.26 0.21 -1.94 16 8 C -0.11 -2.93 5.89 -19.77 -0.12 -3.05 16 9 C -0.11 -2.68 9.79 71.24 0.70 -1.99 16 10 C 0.07 1.99 5.67 22.50 0.13 2.12 16 11 O -0.35 -11.81 8.15 -92.44 -0.75 -12.57 16 12 C 0.08 2.77 6.06 71.99 0.44 3.20 16 13 C -0.09 -3.77 5.52 30.60 0.17 -3.61 16 14 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 15 C -0.54 -31.56 9.66 25.60 0.25 -31.31 16 16 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 17 C 0.00 0.19 5.47 84.65 0.46 0.65 16 18 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 19 Si 0.95 44.18 27.47 68.60 1.88 46.07 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 23 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.06 1.53 7.53 -2.39 -0.02 1.51 16 25 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 26 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 28 H 0.09 1.01 8.08 -2.39 -0.02 1.00 16 29 H 0.35 2.67 9.08 -89.69 -0.81 1.86 16 30 H 0.35 3.89 8.98 -89.70 -0.81 3.09 16 31 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 34 H 0.06 1.59 7.53 -2.39 -0.02 1.57 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 40 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -69.26 340.24 2.57 -66.69 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.66 Total: 14.63 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 3.63 Total: -42.58 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.53 Total: -72.24 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.75 Total: -12.57 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -69.26 2.57 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.144 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds