Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38289 * 119.94256 * 2 1 4 4 C 1.38123 * 120.05681 * 180.02562 * 3 2 1 5 5 C 1.38761 * 119.94005 * 359.68346 * 4 3 2 6 6 O 1.35902 * 120.05418 * 180.31998 * 5 4 3 7 7 C 1.42896 * 116.99949 * 0.24710 * 6 5 4 8 8 C 1.53007 * 109.47026 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47050 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99832 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00338 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00447 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99886 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47503 * 89.99545 * 14 12 10 16 16 H 1.48499 * 109.47257 * 209.99863 * 14 12 10 17 17 H 1.48500 * 109.46982 * 329.99224 * 14 12 10 18 18 C 1.38708 * 119.89080 * 0.56852 * 5 4 3 19 19 C 1.50697 * 120.02956 * 179.74960 * 18 5 4 20 20 H 1.09001 * 109.47175 * 324.72012 * 19 18 5 21 21 C 1.52993 * 109.47201 * 84.72424 * 19 18 5 22 22 N 1.46905 * 109.47125 * 204.72374 * 19 18 5 23 23 C 1.38165 * 119.94051 * 359.47585 * 18 5 4 24 24 H 1.08998 * 109.46456 * 269.97505 * 1 2 3 25 25 H 1.08998 * 109.46968 * 29.97796 * 1 2 3 26 26 H 1.08997 * 109.46836 * 149.97637 * 1 2 3 27 27 H 1.08000 * 119.97551 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.03104 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47837 * 300.00261 * 7 6 5 30 30 H 1.09002 * 109.47017 * 60.00222 * 7 6 5 31 31 H 1.08994 * 109.46982 * 300.00222 * 8 7 6 32 32 H 1.08995 * 109.47092 * 60.00628 * 8 7 6 33 33 H 1.08994 * 109.47671 * 300.00764 * 9 8 7 34 34 H 1.09006 * 109.46930 * 60.00754 * 9 8 7 35 35 H 0.96996 * 120.00306 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47408 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.47555 * 300.00247 * 21 19 18 38 38 H 1.09001 * 109.47393 * 59.99721 * 21 19 18 39 39 H 1.00901 * 110.99869 * 296.04907 * 22 19 18 40 40 H 1.00896 * 110.99543 * 60.00030 * 22 19 18 41 41 H 1.08004 * 119.97406 * 180.25587 * 23 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2735 0.0000 0.0056 6 8 5.6325 0.0001 0.0116 7 6 6.2811 1.2733 0.0168 8 6 7.7980 1.0728 0.0226 9 6 8.4926 2.4361 0.0275 10 6 9.9865 2.2387 0.0338 11 1 10.3994 1.2407 0.0338 12 6 10.8264 3.3321 0.0384 13 7 12.1302 3.1599 0.0434 14 14 10.1124 5.0583 0.0377 15 1 9.9175 5.5141 1.4374 16 1 11.0464 5.9800 -0.6575 17 1 8.8057 5.0531 -0.6678 18 6 3.5788 -1.2006 0.0003 19 6 4.3304 -2.5067 0.0012 20 1 5.2414 -2.4021 -0.5882 21 6 4.6934 -2.8853 1.4384 22 7 3.4868 -3.5575 -0.5838 23 6 2.1972 -1.1979 -0.0001 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6560 2.1328 0.0004 28 1 4.1171 2.1371 -0.0010 29 1 5.9923 1.8320 -0.8734 30 1 5.9843 1.8287 0.9065 31 1 8.0872 0.5140 0.9126 32 1 8.0945 0.5178 -0.8673 33 1 8.2032 2.9946 -0.8626 34 1 8.1962 2.9917 0.9173 35 1 12.7211 3.9291 0.0471 36 1 5.2374 -3.8298 1.4391 37 1 5.3193 -2.1056 1.8725 38 1 3.7824 -2.9899 2.0277 39 1 2.6661 -3.7184 -0.0193 40 1 3.2334 -3.3307 -1.5337 41 1 1.6557 -2.1324 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = -39.226126 kcal Electronic energy + Delta-G solvation = -19416.312288 eV Core-core repulsion = 16488.363688 eV Total energy + Delta-G solvation = -2927.948601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44307 -37.93163 -36.06884 -34.19315 -32.21177 -31.53804 -30.32446 -28.98374 -27.72781 -26.17039 -24.05694 -23.06414 -21.24382 -20.51257 -19.96746 -18.00663 -16.87741 -16.38410 -15.96499 -15.64718 -15.49301 -14.63361 -14.22555 -14.15820 -13.97139 -13.71091 -13.44724 -13.41206 -12.73669 -12.54483 -12.31667 -12.07388 -11.90024 -11.80150 -11.65346 -11.27799 -11.11115 -11.08197 -10.69358 -10.60096 -10.09676 -9.87156 -9.76434 -9.27052 -9.11569 -8.84004 -8.59190 -7.99219 -6.08915 -4.08006 1.19155 1.34158 3.26441 3.33928 3.36090 3.38677 3.59944 4.40031 4.41876 4.57690 4.66853 4.77274 5.05608 5.10800 5.23866 5.24969 5.28652 5.37587 5.37739 5.39195 5.45870 5.51442 5.71155 5.78146 5.79242 5.87663 5.99533 6.18412 6.26231 6.31622 6.36834 6.39633 6.46502 6.73916 6.75207 6.98046 7.17595 7.26686 7.29709 7.53951 7.72641 8.48203 8.95865 9.52329 11.04406 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.003914 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.213970 B = 7151.486514 C = 8074.957362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C -0.083 4.083 4 C -0.204 4.204 5 C 0.142 3.858 6 O -0.309 6.309 7 C 0.057 3.943 8 C -0.100 4.100 9 C -0.010 4.010 10 C -0.522 4.522 11 H 0.074 0.926 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.266 1.266 18 C -0.152 4.152 19 C 0.136 3.864 20 H 0.096 0.904 21 C -0.137 4.137 22 N -0.840 5.840 23 C -0.088 4.088 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.336 0.664 40 H 0.342 0.658 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.740 -7.507 0.215 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C -0.101 4.101 4 C -0.223 4.223 5 C 0.095 3.905 6 O -0.223 6.223 7 C -0.018 4.018 8 C -0.138 4.138 9 C -0.047 4.047 10 C -0.560 4.560 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.154 4.154 19 C 0.025 3.975 20 H 0.114 0.886 21 C -0.195 4.195 22 N -0.368 5.368 23 C -0.106 4.106 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.773 -8.070 0.327 24.163 hybrid contribution -1.017 2.194 -0.055 2.418 sum -23.789 -5.877 0.272 24.506 Atomic orbital electron populations 1.20685 0.91280 1.02398 1.01953 1.19707 0.95941 0.92952 1.04478 1.20808 0.93346 0.97540 0.98380 1.21361 0.95299 0.97555 1.08075 1.18893 0.83357 0.93257 0.94960 1.86115 1.15176 1.33472 1.87494 1.23212 0.95129 0.82747 1.00714 1.21511 0.88442 1.00963 1.02846 1.19511 0.96778 0.91945 0.96465 1.21064 0.88611 0.95161 1.51153 0.90790 1.25021 0.94722 0.99186 0.94499 1.69906 1.02440 1.30821 1.50815 0.86779 0.79343 0.84618 0.78542 1.20221 1.21258 1.19092 1.20202 0.93646 0.94897 1.06677 1.20241 0.95767 0.84470 0.97065 0.88600 1.21750 1.01344 1.02096 0.94308 1.59044 1.24875 1.46114 1.06795 1.20571 0.92427 0.97571 1.00070 0.91618 0.91825 0.91924 0.86056 0.85188 0.92458 0.92426 0.91557 0.91554 0.96413 0.96848 0.92627 0.91657 0.91570 0.93197 0.85097 0.84558 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.13 -1.36 5.88 -104.60 -0.62 -1.97 16 3 C -0.08 -0.93 9.69 -39.60 -0.38 -1.32 16 4 C -0.20 -2.68 9.04 -39.43 -0.36 -3.04 16 5 C 0.14 2.04 6.66 -39.21 -0.26 1.78 16 6 O -0.31 -4.98 9.28 -19.43 -0.18 -5.16 16 7 C 0.06 0.93 4.74 37.16 0.18 1.10 16 8 C -0.10 -1.97 5.52 -26.73 -0.15 -2.12 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 10 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 11 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 14 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 18 C -0.15 -1.89 5.03 -104.48 -0.53 -2.41 16 19 C 0.14 1.61 3.32 -68.87 -0.23 1.38 16 20 H 0.10 1.32 7.70 -51.93 -0.40 0.92 16 21 C -0.14 -1.57 9.43 37.15 0.35 -1.22 16 22 N -0.84 -8.09 8.77 -5.66 -0.05 -8.14 16 23 C -0.09 -0.93 8.92 -39.61 -0.35 -1.28 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.13 1.63 6.30 -52.49 -0.33 1.30 16 29 H 0.06 0.89 7.65 -51.93 -0.40 0.49 16 30 H 0.06 0.89 7.67 -51.93 -0.40 0.49 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.34 2.69 7.40 -39.29 -0.29 2.40 16 40 H 0.34 3.01 9.02 -39.29 -0.35 2.65 16 41 H 0.12 0.99 6.39 -52.48 -0.34 0.65 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -30.63 333.93 -8.28 -38.91 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.66 Total: 2.70 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.53 Total: -23.16 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.72 Total: -35.09 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.18 Total: -5.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.63 -8.28 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.319 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds