Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38289 * 119.94256 * 2 1 4 4 C 1.38123 * 120.05681 * 180.02562 * 3 2 1 5 5 C 1.38761 * 119.94005 * 359.68346 * 4 3 2 6 6 O 1.35902 * 120.05418 * 180.31998 * 5 4 3 7 7 C 1.42896 * 116.99949 * 0.24710 * 6 5 4 8 8 C 1.53007 * 109.47026 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47050 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99832 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00338 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00447 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99886 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47503 * 89.99545 * 14 12 10 16 16 H 1.48499 * 109.47257 * 209.99863 * 14 12 10 17 17 H 1.48500 * 109.46982 * 329.99224 * 14 12 10 18 18 C 1.38708 * 119.89080 * 0.56852 * 5 4 3 19 19 C 1.50697 * 120.02956 * 179.74960 * 18 5 4 20 20 H 1.09001 * 109.47175 * 324.72012 * 19 18 5 21 21 C 1.52993 * 109.47201 * 84.72424 * 19 18 5 22 22 N 1.46905 * 109.47125 * 204.72374 * 19 18 5 23 23 C 1.38165 * 119.94051 * 359.47585 * 18 5 4 24 24 H 1.08998 * 109.46456 * 269.97505 * 1 2 3 25 25 H 1.08998 * 109.46968 * 29.97796 * 1 2 3 26 26 H 1.08997 * 109.46836 * 149.97637 * 1 2 3 27 27 H 1.08000 * 119.97551 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.03104 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47837 * 300.00261 * 7 6 5 30 30 H 1.09002 * 109.47017 * 60.00222 * 7 6 5 31 31 H 1.08994 * 109.46982 * 300.00222 * 8 7 6 32 32 H 1.08995 * 109.47092 * 60.00628 * 8 7 6 33 33 H 1.08994 * 109.47671 * 300.00764 * 9 8 7 34 34 H 1.09006 * 109.46930 * 60.00754 * 9 8 7 35 35 H 0.96996 * 120.00306 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47408 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.47555 * 300.00247 * 21 19 18 38 38 H 1.09001 * 109.47393 * 59.99721 * 21 19 18 39 39 H 1.00901 * 110.99869 * 296.04907 * 22 19 18 40 40 H 1.00896 * 110.99543 * 60.00030 * 22 19 18 41 41 H 1.08004 * 119.97406 * 180.25587 * 23 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2735 0.0000 0.0056 6 8 5.6325 0.0001 0.0116 7 6 6.2811 1.2733 0.0168 8 6 7.7980 1.0728 0.0226 9 6 8.4926 2.4361 0.0275 10 6 9.9865 2.2387 0.0338 11 1 10.3994 1.2407 0.0338 12 6 10.8264 3.3321 0.0384 13 7 12.1302 3.1599 0.0434 14 14 10.1124 5.0583 0.0377 15 1 9.9175 5.5141 1.4374 16 1 11.0464 5.9800 -0.6575 17 1 8.8057 5.0531 -0.6678 18 6 3.5788 -1.2006 0.0003 19 6 4.3304 -2.5067 0.0012 20 1 5.2414 -2.4021 -0.5882 21 6 4.6934 -2.8853 1.4384 22 7 3.4868 -3.5575 -0.5838 23 6 2.1972 -1.1979 -0.0001 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6560 2.1328 0.0004 28 1 4.1171 2.1371 -0.0010 29 1 5.9923 1.8320 -0.8734 30 1 5.9843 1.8287 0.9065 31 1 8.0872 0.5140 0.9126 32 1 8.0945 0.5178 -0.8673 33 1 8.2032 2.9946 -0.8626 34 1 8.1962 2.9917 0.9173 35 1 12.7211 3.9291 0.0471 36 1 5.2374 -3.8298 1.4391 37 1 5.3193 -2.1056 1.8725 38 1 3.7824 -2.9899 2.0277 39 1 2.6661 -3.7184 -0.0193 40 1 3.2334 -3.3307 -1.5337 41 1 1.6557 -2.1324 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -58.253325 kcal Electronic energy + Delta-G solvation = -19417.137370 eV Core-core repulsion = 16488.363688 eV Total energy + Delta-G solvation = -2928.773682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42029 -39.00330 -36.92652 -36.01866 -33.97195 -32.64419 -31.22495 -29.85693 -29.36306 -27.09738 -25.28697 -24.38415 -22.45318 -21.86793 -21.06735 -19.17090 -18.85379 -17.40408 -17.21167 -16.59823 -16.44873 -16.22610 -15.47993 -15.23043 -14.94842 -14.82633 -14.56778 -14.54004 -14.40292 -13.68725 -13.53243 -13.11213 -13.01985 -12.86778 -12.71073 -12.57259 -12.48985 -12.04294 -11.98558 -11.83874 -11.81580 -11.69795 -11.41975 -11.36342 -10.79173 -9.96664 -9.67376 -8.94344 -8.31557 -6.37366 0.30785 0.43231 1.35575 1.37842 1.49428 2.23750 2.34720 2.70849 3.03407 3.60726 3.68759 3.84647 3.96408 4.00743 4.06755 4.23837 4.32673 4.35718 4.38375 4.44259 4.54496 4.67660 4.73454 4.78793 4.87457 4.90168 4.93508 4.98171 5.07131 5.21462 5.26327 5.37276 5.38877 5.44096 5.47543 5.60146 5.64031 5.87521 6.17097 6.24275 6.47116 6.58583 6.70841 7.27159 8.85440 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.003914 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.213970 B = 7151.486514 C = 8074.957362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.090 4.090 4 C -0.215 4.215 5 C 0.108 3.892 6 O -0.327 6.327 7 C 0.069 3.931 8 C -0.093 4.093 9 C -0.006 4.006 10 C -0.538 4.538 11 H 0.030 0.970 12 C 0.003 3.997 13 N -0.952 5.952 14 Si 0.954 3.046 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.242 1.242 18 C -0.157 4.157 19 C 0.140 3.860 20 H 0.069 0.931 21 C -0.133 4.133 22 N -0.836 5.836 23 C -0.088 4.088 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.143 0.857 28 H 0.132 0.868 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.268 0.732 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.348 0.652 40 H 0.348 0.652 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.521 -6.568 0.242 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.234 4.234 5 C 0.063 3.937 6 O -0.241 6.241 7 C -0.006 4.006 8 C -0.131 4.131 9 C -0.043 4.043 10 C -0.576 4.576 11 H 0.048 0.952 12 C -0.194 4.194 13 N -0.592 5.592 14 Si 0.777 3.223 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.166 1.166 18 C -0.160 4.160 19 C 0.028 3.972 20 H 0.087 0.913 21 C -0.191 4.191 22 N -0.367 5.367 23 C -0.106 4.106 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.591 -7.156 0.352 27.539 hybrid contribution 0.120 1.760 -0.068 1.766 sum -26.471 -5.395 0.285 27.017 Atomic orbital electron populations 1.20755 0.88842 1.03650 1.02966 1.20144 0.97725 0.92452 1.02364 1.21131 0.92730 0.99035 0.97881 1.21505 0.96320 0.97128 1.08446 1.19192 0.82455 0.94647 0.97443 1.86050 1.16714 1.32907 1.88428 1.22885 0.92558 0.83325 1.01784 1.21279 0.91200 0.98819 1.01788 1.19420 0.93564 0.94058 0.97255 1.21432 0.91733 0.93472 1.50943 0.95205 1.26074 0.94946 1.04503 0.93891 1.70072 1.04290 1.32504 1.52339 0.85599 0.79399 0.77920 0.79384 1.18929 1.20939 1.16557 1.20372 0.94553 0.94386 1.06699 1.20056 0.95243 0.85111 0.96766 0.91287 1.21695 1.01657 1.01404 0.94329 1.58973 1.25366 1.45061 1.07298 1.20880 0.91602 0.98990 0.99110 0.90582 0.90846 0.90522 0.83900 0.85054 0.91408 0.91271 0.92661 0.92759 0.95420 0.95508 0.92367 0.91544 0.93440 0.91770 0.83723 0.83869 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.24 0.71 -0.44 16 2 C -0.13 -2.23 5.88 -19.85 -0.12 -2.35 16 3 C -0.09 -1.80 9.69 22.25 0.22 -1.58 16 4 C -0.22 -5.35 9.04 22.37 0.20 -5.15 16 5 C 0.11 3.06 6.66 22.51 0.15 3.21 16 6 O -0.33 -10.67 9.28 -92.44 -0.86 -11.53 16 7 C 0.07 2.24 4.74 71.98 0.34 2.58 16 8 C -0.09 -3.75 5.52 30.60 0.17 -3.58 16 9 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 10 C -0.54 -31.46 9.66 25.60 0.25 -31.21 16 11 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 12 C 0.00 0.15 5.47 84.65 0.46 0.62 16 13 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 14 Si 0.95 43.72 27.47 68.60 1.88 45.61 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 18 C -0.16 -3.75 5.03 -19.77 -0.10 -3.85 16 19 C 0.14 3.26 3.32 44.16 0.15 3.41 16 20 H 0.07 1.97 7.70 -2.39 -0.02 1.95 16 21 C -0.13 -3.02 9.43 71.98 0.68 -2.34 16 22 N -0.84 -14.83 8.77 -171.80 -1.51 -16.33 16 23 C -0.09 -1.62 8.92 22.25 0.20 -1.42 16 24 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 26 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 27 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.13 3.10 6.30 -2.91 -0.02 3.09 16 29 H 0.07 2.03 7.65 -2.39 -0.02 2.01 16 30 H 0.07 2.06 7.67 -2.39 -0.02 2.04 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 34 H 0.03 1.17 7.57 -2.38 -0.02 1.15 16 35 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.35 4.69 7.40 -89.69 -0.66 4.02 16 40 H 0.35 5.54 9.02 -89.70 -0.81 4.73 16 41 H 0.15 1.87 6.39 -2.91 -0.02 1.85 16 Total: -1.00 -68.16 333.93 2.74 -65.42 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.51 Total: 19.07 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 3.43 Total: -42.24 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -1.21 Total: -76.33 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.86 Total: -11.53 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -68.16 2.74 -65.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.164 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds