Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38123 * 120.03846 * 2 1 4 4 C 1.38261 * 120.07278 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.92530 * 180.02562 * 4 3 2 6 6 O 1.42907 * 109.47042 * 90.00313 * 5 4 3 7 7 C 1.38303 * 120.15220 * 359.97438 * 4 3 2 8 8 C 1.38084 * 120.07292 * 359.74490 * 7 4 3 9 9 C 1.38892 * 120.03336 * 179.97438 * 2 1 3 10 10 N 1.39672 * 120.07731 * 359.97438 * 9 2 1 11 11 C 1.46900 * 111.00323 * 116.04521 * 10 9 2 12 12 C 1.50706 * 109.47055 * 298.58301 * 11 10 9 13 13 H 1.07994 * 119.99765 * 354.93350 * 12 11 10 14 14 C 1.37875 * 119.99837 * 174.93142 * 12 11 10 15 15 N 1.31516 * 119.99856 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46720 * 90.00081 * 16 14 12 18 18 H 1.48497 * 109.47279 * 210.00355 * 16 14 12 19 19 H 1.48505 * 109.47013 * 330.00762 * 16 14 12 20 20 C 1.46899 * 110.99907 * 240.00180 * 10 9 2 21 21 C 1.53003 * 109.47202 * 175.60353 * 20 10 9 22 22 C 1.52998 * 109.47573 * 55.60149 * 20 10 9 23 23 H 1.09002 * 109.46618 * 270.01846 * 1 2 3 24 24 H 1.08997 * 109.47163 * 30.01206 * 1 2 3 25 25 H 1.08993 * 109.47388 * 150.01963 * 1 2 3 26 26 H 1.08002 * 119.96281 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47249 * 210.00270 * 5 4 3 28 28 H 1.08995 * 109.47156 * 330.00583 * 5 4 3 29 29 H 0.96694 * 113.99757 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.96673 * 180.02562 * 7 4 3 31 31 H 1.08005 * 120.03905 * 180.27776 * 8 7 4 32 32 H 1.09001 * 109.46896 * 58.57704 * 11 10 9 33 33 H 1.08997 * 109.47494 * 178.57903 * 11 10 9 34 34 H 0.97006 * 119.99401 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47020 * 295.60088 * 20 10 9 36 36 H 1.09003 * 109.46544 * 306.59476 * 21 20 10 37 37 H 1.08997 * 109.47083 * 66.58786 * 21 20 10 38 38 H 1.09000 * 109.46909 * 186.59717 * 21 20 10 39 39 H 1.08991 * 109.47589 * 179.97438 * 22 20 10 40 40 H 1.09003 * 109.46869 * 300.00502 * 22 20 10 41 41 H 1.08999 * 109.46997 * 59.99925 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1965 -0.0005 5 6 4.3321 2.5031 0.0001 6 8 4.5701 2.9151 1.3476 7 6 4.2765 0.0011 -0.0005 8 6 3.5915 -1.1979 0.0053 9 6 2.2022 -1.2024 0.0005 10 7 1.5062 -2.4134 0.0016 11 6 1.7654 -3.1708 -1.2301 12 6 1.2909 -2.3747 -2.4185 13 1 0.7684 -1.4415 -2.2695 14 6 1.5239 -2.8380 -3.6960 15 7 2.1598 -3.9749 -3.8775 16 14 0.9351 -1.8518 -5.1692 17 1 1.9984 -0.9029 -5.5864 18 1 0.6266 -2.7743 -6.2912 19 1 -0.2878 -1.0940 -4.8007 20 6 1.8388 -3.2107 1.1897 21 6 0.9786 -4.4758 1.2122 22 6 1.5667 -2.3865 2.4497 23 1 -0.3632 0.0003 1.0277 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6585 2.1311 -0.0004 27 1 5.2846 2.3749 -0.5143 28 1 3.7414 3.2619 -0.5129 29 1 5.0508 3.7505 1.4243 30 1 5.3565 0.0052 -0.0005 31 1 4.1352 -2.1311 0.0098 32 1 2.8351 -3.3589 -1.3226 33 1 1.2315 -4.1202 -1.1921 34 1 2.3240 -4.3006 -4.7763 35 1 2.8924 -3.4883 1.1577 36 1 -0.0729 -4.2016 1.1260 37 1 1.2560 -5.1187 0.3769 38 1 1.1397 -5.0080 2.1497 39 1 1.8130 -2.9782 3.3312 40 1 2.1795 -1.4852 2.4336 41 1 0.5131 -2.1089 2.4817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050561209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -26.769224 kcal Electronic energy + Delta-G solvation = -20695.930098 eV Core-core repulsion = 17768.521669 eV Total energy + Delta-G solvation = -2927.408429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67097 -37.37612 -35.93343 -32.93826 -32.31117 -31.50108 -29.70930 -27.29828 -26.45466 -26.10717 -24.48577 -22.24887 -21.68117 -20.13299 -18.98428 -17.36369 -16.56177 -16.05515 -15.31465 -15.04070 -14.78961 -14.12174 -13.94660 -13.71540 -13.47163 -12.77339 -12.74228 -12.50185 -12.18479 -12.03632 -11.79017 -11.61473 -11.58240 -11.41738 -11.09373 -10.90967 -10.72480 -10.65810 -10.59895 -10.48235 -10.14317 -9.99026 -9.81675 -9.18143 -8.44655 -8.14952 -7.73409 -7.39183 -6.02672 -4.02565 1.86904 2.01887 3.32157 3.38092 3.42226 4.14688 4.41993 4.69575 4.77261 5.16464 5.22829 5.34187 5.49598 5.51453 5.53444 5.56247 5.62314 5.79935 5.89594 6.05593 6.07661 6.17029 6.24967 6.27730 6.34558 6.37968 6.45676 6.54166 6.68065 6.76454 6.84067 7.02725 7.07385 7.20594 7.26441 7.48286 7.51664 7.64487 7.80367 8.08998 8.33035 8.55248 9.05503 9.61370 11.08386 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.008151 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.397668 B = 3434.311330 C = 4578.533727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.071 4.071 3 C -0.100 4.100 4 C -0.118 4.118 5 C 0.124 3.876 6 O -0.569 6.569 7 C -0.098 4.098 8 C -0.150 4.150 9 C 0.160 3.840 10 N -0.505 5.505 11 C 0.195 3.805 12 C -0.505 4.505 13 H 0.066 0.934 14 C 0.058 3.942 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.080 3.920 21 C -0.140 4.140 22 C -0.143 4.143 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.373 0.627 30 H 0.110 0.890 31 H 0.114 0.886 32 H -0.003 1.003 33 H 0.038 0.962 34 H 0.260 0.740 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 8.558 9.620 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.072 4.072 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.046 3.954 6 O -0.374 6.374 7 C -0.116 4.116 8 C -0.170 4.170 9 C 0.066 3.934 10 N -0.228 5.228 11 C 0.071 3.929 12 C -0.543 4.543 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.027 4.027 21 C -0.198 4.198 22 C -0.201 4.201 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.132 0.868 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.219 0.781 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.207 7.934 9.609 12.520 hybrid contribution 1.094 0.739 -1.279 1.838 sum 2.302 8.673 8.330 12.244 Atomic orbital electron populations 1.20639 0.91076 1.03033 1.01103 1.19728 0.96334 0.91378 0.99731 1.20703 0.93077 0.97198 1.00859 1.19318 0.93626 0.93412 1.05413 1.20935 0.97744 0.93597 0.83083 1.86610 1.79856 1.43810 1.27129 1.20694 0.98837 0.91861 1.00251 1.21571 0.95359 0.97740 1.02298 1.18521 0.89570 0.91476 0.93875 1.59996 1.56050 1.02987 1.03769 1.19884 0.95364 0.93532 0.84073 1.21183 1.36084 1.07200 0.89849 0.91596 1.24932 0.95365 0.95115 0.98945 1.69954 1.41806 1.20196 1.21910 0.86562 0.79195 0.79845 0.82274 1.20812 1.21301 1.19712 1.21556 0.97045 0.93579 0.90512 1.21826 1.00717 0.96430 1.00814 1.21861 1.02218 0.99706 0.96266 0.92530 0.93244 0.89185 0.86797 0.93257 0.93223 0.78137 0.87144 0.86785 0.98468 0.94392 0.93000 0.94975 0.91896 0.92098 0.93264 0.93085 0.92929 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.55 36.01 0.34 -1.44 16 2 C -0.07 -1.36 5.54 -104.42 -0.58 -1.94 16 3 C -0.10 -1.75 9.35 -39.61 -0.37 -2.12 16 4 C -0.12 -2.01 5.51 -104.59 -0.58 -2.58 16 5 C 0.12 1.64 7.17 36.00 0.26 1.90 16 6 O -0.57 -7.33 13.64 -35.23 -0.48 -7.81 16 7 C -0.10 -1.76 9.69 -39.61 -0.38 -2.14 16 8 C -0.15 -3.00 8.53 -39.38 -0.34 -3.34 16 9 C 0.16 3.30 2.18 -83.79 -0.18 3.12 16 10 N -0.51 -10.70 3.35 -164.92 -0.55 -11.25 16 11 C 0.19 4.94 4.34 -4.97 -0.02 4.92 16 12 C -0.50 -13.96 8.59 -34.44 -0.30 -14.25 16 13 H 0.07 1.82 6.19 -52.49 -0.32 1.50 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.08 1.46 2.37 -67.71 -0.16 1.29 16 21 C -0.14 -2.33 8.78 37.16 0.33 -2.01 16 22 C -0.14 -2.24 8.99 37.16 0.33 -1.91 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 25 H 0.09 1.79 6.63 -51.93 -0.34 1.45 16 26 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.37 2.73 9.12 45.56 0.42 3.14 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.11 2.29 7.05 -52.48 -0.37 1.92 16 32 H 0.00 -0.07 7.31 -51.93 -0.38 -0.45 16 33 H 0.04 1.01 6.19 -51.93 -0.32 0.69 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.03 0.60 7.27 -51.93 -0.38 0.23 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.88 7.06 -51.93 -0.37 0.51 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -31.19 330.05 -7.85 -39.04 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.77 Total: 2.98 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.74 Total: -18.97 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.18 Total: -37.05 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.48 Total: -7.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.19 -7.85 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050561209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.273 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds