Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38123 * 120.03846 * 2 1 4 4 C 1.38261 * 120.07278 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.92530 * 180.02562 * 4 3 2 6 6 O 1.42907 * 109.47042 * 90.00313 * 5 4 3 7 7 C 1.38303 * 120.15220 * 359.97438 * 4 3 2 8 8 C 1.38084 * 120.07292 * 359.74490 * 7 4 3 9 9 C 1.38892 * 120.03336 * 179.97438 * 2 1 3 10 10 N 1.39672 * 120.07731 * 359.97438 * 9 2 1 11 11 C 1.46900 * 111.00323 * 116.04521 * 10 9 2 12 12 C 1.50706 * 109.47055 * 298.58301 * 11 10 9 13 13 H 1.07994 * 119.99765 * 354.93350 * 12 11 10 14 14 C 1.37875 * 119.99837 * 174.93142 * 12 11 10 15 15 N 1.31516 * 119.99856 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46720 * 90.00081 * 16 14 12 18 18 H 1.48497 * 109.47279 * 210.00355 * 16 14 12 19 19 H 1.48505 * 109.47013 * 330.00762 * 16 14 12 20 20 C 1.46899 * 110.99907 * 240.00180 * 10 9 2 21 21 C 1.53003 * 109.47202 * 175.60353 * 20 10 9 22 22 C 1.52998 * 109.47573 * 55.60149 * 20 10 9 23 23 H 1.09002 * 109.46618 * 270.01846 * 1 2 3 24 24 H 1.08997 * 109.47163 * 30.01206 * 1 2 3 25 25 H 1.08993 * 109.47388 * 150.01963 * 1 2 3 26 26 H 1.08002 * 119.96281 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47249 * 210.00270 * 5 4 3 28 28 H 1.08995 * 109.47156 * 330.00583 * 5 4 3 29 29 H 0.96694 * 113.99757 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.96673 * 180.02562 * 7 4 3 31 31 H 1.08005 * 120.03905 * 180.27776 * 8 7 4 32 32 H 1.09001 * 109.46896 * 58.57704 * 11 10 9 33 33 H 1.08997 * 109.47494 * 178.57903 * 11 10 9 34 34 H 0.97006 * 119.99401 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47020 * 295.60088 * 20 10 9 36 36 H 1.09003 * 109.46544 * 306.59476 * 21 20 10 37 37 H 1.08997 * 109.47083 * 66.58786 * 21 20 10 38 38 H 1.09000 * 109.46909 * 186.59717 * 21 20 10 39 39 H 1.08991 * 109.47589 * 179.97438 * 22 20 10 40 40 H 1.09003 * 109.46869 * 300.00502 * 22 20 10 41 41 H 1.08999 * 109.46997 * 59.99925 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1965 -0.0005 5 6 4.3321 2.5031 0.0001 6 8 4.5701 2.9151 1.3476 7 6 4.2765 0.0011 -0.0005 8 6 3.5915 -1.1979 0.0053 9 6 2.2022 -1.2024 0.0005 10 7 1.5062 -2.4134 0.0016 11 6 1.7654 -3.1708 -1.2301 12 6 1.2909 -2.3747 -2.4185 13 1 0.7684 -1.4415 -2.2695 14 6 1.5239 -2.8380 -3.6960 15 7 2.1598 -3.9749 -3.8775 16 14 0.9351 -1.8518 -5.1692 17 1 1.9984 -0.9029 -5.5864 18 1 0.6266 -2.7743 -6.2912 19 1 -0.2878 -1.0940 -4.8007 20 6 1.8388 -3.2107 1.1897 21 6 0.9786 -4.4758 1.2122 22 6 1.5667 -2.3865 2.4497 23 1 -0.3632 0.0003 1.0277 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6585 2.1311 -0.0004 27 1 5.2846 2.3749 -0.5143 28 1 3.7414 3.2619 -0.5129 29 1 5.0508 3.7505 1.4243 30 1 5.3565 0.0052 -0.0005 31 1 4.1352 -2.1311 0.0098 32 1 2.8351 -3.3589 -1.3226 33 1 1.2315 -4.1202 -1.1921 34 1 2.3240 -4.3006 -4.7763 35 1 2.8924 -3.4883 1.1577 36 1 -0.0729 -4.2016 1.1260 37 1 1.2560 -5.1187 0.3769 38 1 1.1397 -5.0080 2.1497 39 1 1.8130 -2.9782 3.3312 40 1 2.1795 -1.4852 2.4336 41 1 0.5131 -2.1089 2.4817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050561209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -46.983333 kcal Electronic energy + Delta-G solvation = -20696.806648 eV Core-core repulsion = 17768.521669 eV Total energy + Delta-G solvation = -2928.284978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15158 -38.67976 -37.11545 -34.96369 -33.73055 -33.01829 -31.27936 -28.87742 -27.89666 -27.65750 -25.89496 -24.02562 -23.24740 -21.52094 -20.45798 -18.54976 -18.29140 -17.65138 -16.91986 -16.62913 -16.22450 -15.80774 -15.40774 -15.00612 -14.81005 -14.31400 -14.15732 -13.93112 -13.79018 -13.64379 -13.42356 -13.10738 -12.88886 -12.85821 -12.75562 -12.57254 -12.38338 -12.17949 -12.04209 -11.91957 -11.87075 -11.50560 -11.23630 -10.92207 -10.60280 -9.59121 -9.19881 -9.11698 -8.19281 -6.26348 0.44817 0.57145 1.38182 1.38808 1.50184 2.39492 2.79456 3.14719 3.17873 3.65655 3.94474 4.07340 4.10376 4.12521 4.20767 4.40172 4.43846 4.49655 4.56310 4.72270 4.78535 4.81703 4.86315 4.94389 4.96348 4.99736 5.03543 5.13134 5.16831 5.30698 5.36508 5.37065 5.45476 5.60703 5.68805 5.70619 5.89254 6.03076 6.09864 6.47734 6.76033 6.94518 6.97651 7.42191 8.92188 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.008151 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.397668 B = 3434.311330 C = 4578.533727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.085 4.085 3 C -0.102 4.102 4 C -0.118 4.118 5 C 0.127 3.873 6 O -0.587 6.587 7 C -0.106 4.106 8 C -0.170 4.170 9 C 0.132 3.868 10 N -0.501 5.501 11 C 0.213 3.787 12 C -0.512 4.512 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.935 5.935 16 Si 0.958 3.042 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.073 3.927 21 C -0.133 4.133 22 C -0.129 4.129 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.143 0.857 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.398 0.602 30 H 0.129 0.871 31 H 0.096 0.904 32 H -0.039 1.039 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.018 0.982 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 11.189 10.244 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.118 4.118 5 C 0.050 3.950 6 O -0.396 6.396 7 C -0.125 4.125 8 C -0.191 4.191 9 C 0.038 3.962 10 N -0.223 5.223 11 C 0.089 3.911 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.576 5.576 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.034 4.034 21 C -0.191 4.191 22 C -0.186 4.186 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.161 0.839 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.248 0.752 30 H 0.147 0.853 31 H 0.114 0.886 32 H -0.021 1.021 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.805 10.594 10.260 14.770 hybrid contribution 1.288 -0.038 -1.385 1.892 sum 2.093 10.557 8.875 13.949 Atomic orbital electron populations 1.20586 0.90064 1.02472 1.02112 1.20022 0.97308 0.91479 0.99782 1.21067 0.93583 0.97602 0.99796 1.19830 0.93955 0.94869 1.03184 1.20906 0.98370 0.92025 0.83699 1.86530 1.80553 1.45787 1.26704 1.20964 0.99917 0.91637 0.99943 1.21598 0.95536 0.98109 1.03810 1.18667 0.89902 0.91599 0.95996 1.59928 1.56231 1.03214 1.02962 1.19466 0.92508 0.93100 0.86051 1.21461 1.35653 1.07157 0.90790 0.91693 1.25792 0.95533 0.96111 1.01914 1.70084 1.43105 1.21832 1.22565 0.85544 0.78985 0.78466 0.78700 1.20372 1.20746 1.18611 1.21737 0.96571 0.94410 0.90663 1.21774 1.00169 0.95610 1.01533 1.21738 1.02188 0.99091 0.95622 0.90717 0.91265 0.92130 0.83944 0.91765 0.91031 0.75203 0.85337 0.88553 1.02097 0.96398 0.92918 0.96372 0.91994 0.94612 0.89918 0.90329 0.94105 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 9.55 71.24 0.68 -2.54 16 2 C -0.08 -3.20 5.54 -19.73 -0.11 -3.30 16 3 C -0.10 -3.35 9.35 22.25 0.21 -3.14 16 4 C -0.12 -3.78 5.51 -19.84 -0.11 -3.89 16 5 C 0.13 2.91 7.17 71.24 0.51 3.42 16 6 O -0.59 -13.05 13.64 -148.98 -2.03 -15.08 16 7 C -0.11 -3.76 9.69 22.25 0.22 -3.55 16 8 C -0.17 -7.05 8.53 22.40 0.19 -6.86 16 9 C 0.13 5.57 2.18 38.21 0.08 5.65 16 10 N -0.50 -21.97 3.35 -675.69 -2.27 -24.24 16 11 C 0.21 11.43 4.34 85.56 0.37 11.80 16 12 C -0.51 -29.14 8.59 25.60 0.22 -28.92 16 13 H 0.06 3.64 6.19 -2.91 -0.02 3.63 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 16 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 C 0.07 2.72 2.37 44.92 0.11 2.82 16 21 C -0.13 -4.50 8.78 71.98 0.63 -3.87 16 22 C -0.13 -3.92 8.99 71.98 0.65 -3.27 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 25 H 0.06 2.40 6.63 -2.39 -0.02 2.39 16 26 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 28 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 29 H 0.40 4.31 9.12 -74.06 -0.68 3.64 16 30 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.10 4.18 7.05 -2.91 -0.02 4.16 16 32 H -0.04 -2.31 7.31 -2.39 -0.02 -2.33 16 33 H 0.02 1.02 6.19 -2.39 -0.01 1.01 16 34 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.02 0.72 7.27 -2.39 -0.02 0.71 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.36 6.66 -2.39 -0.02 1.34 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.33 7.06 -2.39 -0.02 1.31 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.03 330.05 2.46 -66.57 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.34 Total: 17.21 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.11 Total: -34.95 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.98 Total: -80.85 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -2.03 Total: -15.08 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.03 2.46 -66.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050561209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.585 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds