Wall clock time and date at job start Mon Mar 30 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48500 * 109.47082 * 240.00227 * 3 2 1 5 5 H 1.48504 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47250 * 120.00061 * 3 2 1 7 7 C 1.37883 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99288 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47115 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46923 * 173.70313 * 10 9 7 12 12 C 1.46907 * 110.99641 * 187.16405 * 11 10 9 13 13 C 1.50702 * 109.46797 * 160.62043 * 12 11 10 14 14 C 1.34513 * 125.78693 * 88.72255 * 13 12 11 15 15 C 1.41379 * 106.84092 * 179.88525 * 14 13 12 16 16 C 1.34514 * 106.83938 * 0.37626 * 15 14 13 17 17 O 1.34297 * 125.79253 * 269.02899 * 13 12 11 18 18 C 1.46896 * 110.99991 * 63.21374 * 11 10 9 19 19 C 1.55235 * 110.47113 * 33.09430 * 18 11 10 20 20 C 1.54893 * 102.58743 * 203.39882 * 19 18 11 21 21 C 1.54262 * 104.31442 * 37.92781 * 20 19 18 22 22 C 1.53871 * 106.60154 * 336.32984 * 21 20 19 23 23 H 0.97003 * 120.00038 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47159 * 60.00475 * 9 7 2 25 25 H 1.09000 * 109.47028 * 300.00312 * 9 7 2 26 26 H 1.08999 * 109.47255 * 53.70368 * 10 9 7 27 27 H 1.08997 * 109.47026 * 293.70518 * 10 9 7 28 28 H 1.09001 * 109.46737 * 280.61943 * 12 11 10 29 29 H 1.08996 * 109.47198 * 40.62688 * 12 11 10 30 30 H 1.08004 * 126.58068 * 0.02919 * 14 13 12 31 31 H 1.08005 * 126.58430 * 180.16053 * 15 14 13 32 32 H 1.07998 * 125.79019 * 179.74624 * 16 15 14 33 33 H 1.09006 * 110.43383 * 155.75160 * 18 11 10 34 34 H 1.09002 * 110.89796 * 85.10817 * 19 18 11 35 35 H 1.08998 * 110.76718 * 321.62867 * 19 18 11 36 36 H 1.09004 * 110.48040 * 279.18826 * 20 19 18 37 37 H 1.08998 * 110.48541 * 156.67934 * 20 19 18 38 38 H 1.09007 * 110.02817 * 95.61153 * 21 20 19 39 39 H 1.09003 * 110.03683 * 216.98996 * 21 20 19 40 40 H 1.08995 * 110.03429 * 119.28218 * 22 21 20 41 41 H 1.09008 * 110.02965 * 240.66489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5169 -4.9289 0.1514 12 6 2.4466 -6.0528 0.3261 13 6 1.7154 -7.2187 0.9402 14 6 1.0589 -8.1793 0.2652 15 6 0.5279 -9.0672 1.2288 16 6 0.8846 -8.5914 2.4354 17 8 1.6037 -7.4717 2.2544 18 6 0.6196 -5.1602 -0.9884 19 6 1.2322 -4.5749 -2.2892 20 6 -0.0156 -4.3519 -3.1794 21 6 -1.1021 -3.8656 -2.1982 22 6 -0.6983 -4.3795 -0.8052 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8897 26 1 2.9436 -3.5431 0.8277 27 1 2.7952 -3.6699 -0.9415 28 1 2.8484 -6.3460 -0.6438 29 1 3.2633 -5.7503 0.9814 30 1 0.9588 -8.2586 -0.8073 31 1 -0.0554 -9.9550 1.0338 32 1 0.6348 -9.0345 3.3881 33 1 0.4190 -6.2253 -1.1048 34 1 1.9148 -5.2874 -2.7523 35 1 1.7367 -3.6300 -2.0876 36 1 -0.3189 -5.2862 -3.6519 37 1 0.1851 -3.5914 -3.9340 38 1 -1.1434 -2.7764 -2.1969 39 1 -2.0716 -4.2754 -2.4816 40 1 -0.5436 -3.5397 -0.1278 41 1 -1.4721 -5.0387 -0.4116 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052077199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:35 Heat of formation + Delta-G solvation = 20.925425 kcal Electronic energy + Delta-G solvation = -20616.696471 eV Core-core repulsion = 17691.356237 eV Total energy + Delta-G solvation = -2925.340234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.36554 -39.11224 -34.91831 -33.26259 -32.71884 -30.91018 -28.94419 -28.22403 -27.11701 -25.13462 -23.35003 -21.61357 -20.97540 -20.21135 -19.69517 -18.89677 -17.14649 -16.57275 -15.84694 -15.56128 -15.14486 -14.52276 -14.30778 -14.09657 -13.61546 -13.30259 -12.72463 -12.60923 -12.51682 -12.27423 -12.12194 -11.54954 -11.40111 -11.03954 -10.88605 -10.71882 -10.55692 -10.53018 -10.46776 -10.00155 -9.83186 -9.76881 -9.72216 -9.41260 -8.75103 -8.33637 -8.28697 -7.66743 -5.97485 -3.99222 1.90168 2.74798 3.18916 3.34219 3.39069 3.41210 4.40584 4.55795 4.87907 5.10811 5.15461 5.18183 5.25539 5.38571 5.42968 5.45314 5.62831 5.80405 5.92553 5.98893 6.05130 6.08108 6.13240 6.22896 6.25369 6.28009 6.33724 6.36545 6.48502 6.63670 6.65389 6.83017 6.94675 6.98400 7.15206 7.32308 7.50789 7.65431 7.80462 7.94572 8.09827 8.46140 9.07093 9.63916 11.13322 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.005474 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.886001 B = 5113.956871 C = 5775.966385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.018 3.982 10 C 0.056 3.944 11 N -0.529 5.529 12 C 0.125 3.875 13 C 0.020 3.980 14 C -0.218 4.218 15 C -0.215 4.215 16 C -0.050 4.050 17 O -0.169 6.169 18 C 0.085 3.915 19 C -0.169 4.169 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.129 4.129 23 H 0.260 0.740 24 H 0.041 0.959 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.198 0.802 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -15.286 -1.598 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.019 4.019 10 C -0.070 4.070 11 N -0.252 5.252 12 C -0.003 4.003 13 C -0.031 4.031 14 C -0.238 4.238 15 C -0.234 4.234 16 C -0.118 4.118 17 O -0.064 6.064 18 C -0.024 4.024 19 C -0.207 4.207 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.166 4.166 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.214 0.786 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.650 -14.938 -0.928 14.980 hybrid contribution 0.698 0.574 -0.803 1.209 sum 1.347 -14.363 -1.730 14.530 Atomic orbital electron populations 1.69943 1.05897 1.26587 1.50613 1.24937 0.94789 0.98935 0.95365 0.86717 0.79631 0.83443 0.78531 1.20374 1.21348 1.20332 1.21186 0.92885 0.91165 1.50954 0.93026 1.19476 0.94197 0.89669 0.98596 1.22553 0.97472 0.88137 0.98852 1.62208 1.19776 1.01637 1.41550 1.20482 0.93649 0.87797 0.98362 1.22499 1.02175 0.98102 0.80351 1.21522 1.04513 0.97394 1.00368 1.21747 1.06300 1.02758 0.92592 1.23939 0.99388 0.88340 1.00116 1.84045 1.57550 1.38075 1.26737 1.22616 0.93558 0.98570 0.87613 1.23452 0.97870 1.02933 0.96452 1.22187 0.95649 0.99903 0.97638 1.22079 0.97139 1.01837 0.94846 1.22537 0.94773 1.01363 0.97964 0.93011 0.94136 0.95653 0.92125 0.94951 0.91860 0.89439 0.84004 0.83922 0.78553 0.90969 0.93079 0.88001 0.92869 0.92168 0.90814 0.93091 0.87387 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.02 0.43 3.04 -27.88 -0.08 0.35 16 10 C 0.06 1.14 4.34 -3.82 -0.02 1.12 16 11 N -0.53 -9.55 4.43 -225.87 -1.00 -10.55 16 12 C 0.13 1.90 5.48 -4.97 -0.03 1.87 16 13 C 0.02 0.30 6.57 -35.62 -0.23 0.07 16 14 C -0.22 -2.99 9.55 -39.70 -0.38 -3.37 16 15 C -0.21 -2.64 10.91 -39.70 -0.43 -3.07 16 16 C -0.05 -0.61 12.09 29.42 0.36 -0.26 16 17 O -0.17 -2.62 10.65 5.73 0.06 -2.56 16 18 C 0.08 1.44 2.66 -65.87 -0.18 1.27 16 19 C -0.17 -2.77 5.36 -24.55 -0.13 -2.91 16 20 C -0.12 -1.80 6.82 -25.07 -0.17 -1.97 16 21 C -0.12 -2.08 6.24 -25.62 -0.16 -2.24 16 22 C -0.13 -2.39 5.65 -25.61 -0.14 -2.53 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.04 1.02 3.99 -51.93 -0.21 0.81 16 25 H 0.03 0.70 7.38 -51.93 -0.38 0.32 16 26 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 27 H 0.03 0.64 5.82 -51.93 -0.30 0.33 16 28 H 0.06 0.86 8.00 -51.93 -0.42 0.44 16 29 H 0.09 1.28 7.78 -51.93 -0.40 0.87 16 30 H 0.14 1.75 7.57 -52.48 -0.40 1.35 16 31 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.07 1.14 5.79 -51.93 -0.30 0.84 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.95 4.34 -51.93 -0.23 1.73 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.45 7.82 -51.93 -0.41 1.04 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 2.40 4.51 -51.93 -0.23 2.17 16 41 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -29.57 316.29 -8.66 -38.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.19 Total: 3.77 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -2.01 Total: -24.73 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.26 Total: -35.87 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.06 Total: -2.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.57 -8.66 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052077199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.152 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds