Wall clock time and date at job start Mon Mar 30 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48500 * 109.47082 * 240.00227 * 3 2 1 5 5 H 1.48504 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47250 * 120.00061 * 3 2 1 7 7 C 1.37883 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99288 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47115 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46923 * 173.70313 * 10 9 7 12 12 C 1.46907 * 110.99641 * 187.16405 * 11 10 9 13 13 C 1.50702 * 109.46797 * 160.62043 * 12 11 10 14 14 C 1.34513 * 125.78693 * 88.72255 * 13 12 11 15 15 C 1.41379 * 106.84092 * 179.88525 * 14 13 12 16 16 C 1.34514 * 106.83938 * 0.37626 * 15 14 13 17 17 O 1.34297 * 125.79253 * 269.02899 * 13 12 11 18 18 C 1.46896 * 110.99991 * 63.21374 * 11 10 9 19 19 C 1.55235 * 110.47113 * 33.09430 * 18 11 10 20 20 C 1.54893 * 102.58743 * 203.39882 * 19 18 11 21 21 C 1.54262 * 104.31442 * 37.92781 * 20 19 18 22 22 C 1.53871 * 106.60154 * 336.32984 * 21 20 19 23 23 H 0.97003 * 120.00038 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47159 * 60.00475 * 9 7 2 25 25 H 1.09000 * 109.47028 * 300.00312 * 9 7 2 26 26 H 1.08999 * 109.47255 * 53.70368 * 10 9 7 27 27 H 1.08997 * 109.47026 * 293.70518 * 10 9 7 28 28 H 1.09001 * 109.46737 * 280.61943 * 12 11 10 29 29 H 1.08996 * 109.47198 * 40.62688 * 12 11 10 30 30 H 1.08004 * 126.58068 * 0.02919 * 14 13 12 31 31 H 1.08005 * 126.58430 * 180.16053 * 15 14 13 32 32 H 1.07998 * 125.79019 * 179.74624 * 16 15 14 33 33 H 1.09006 * 110.43383 * 155.75160 * 18 11 10 34 34 H 1.09002 * 110.89796 * 85.10817 * 19 18 11 35 35 H 1.08998 * 110.76718 * 321.62867 * 19 18 11 36 36 H 1.09004 * 110.48040 * 279.18826 * 20 19 18 37 37 H 1.08998 * 110.48541 * 156.67934 * 20 19 18 38 38 H 1.09007 * 110.02817 * 95.61153 * 21 20 19 39 39 H 1.09003 * 110.03683 * 216.98996 * 21 20 19 40 40 H 1.08995 * 110.03429 * 119.28218 * 22 21 20 41 41 H 1.09008 * 110.02965 * 240.66489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5169 -4.9289 0.1514 12 6 2.4466 -6.0528 0.3261 13 6 1.7154 -7.2187 0.9402 14 6 1.0589 -8.1793 0.2652 15 6 0.5279 -9.0672 1.2288 16 6 0.8846 -8.5914 2.4354 17 8 1.6037 -7.4717 2.2544 18 6 0.6196 -5.1602 -0.9884 19 6 1.2322 -4.5749 -2.2892 20 6 -0.0156 -4.3519 -3.1794 21 6 -1.1021 -3.8656 -2.1982 22 6 -0.6983 -4.3795 -0.8052 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8897 26 1 2.9436 -3.5431 0.8277 27 1 2.7952 -3.6699 -0.9415 28 1 2.8484 -6.3460 -0.6438 29 1 3.2633 -5.7503 0.9814 30 1 0.9588 -8.2586 -0.8073 31 1 -0.0554 -9.9550 1.0338 32 1 0.6348 -9.0345 3.3881 33 1 0.4190 -6.2253 -1.1048 34 1 1.9148 -5.2874 -2.7523 35 1 1.7367 -3.6300 -2.0876 36 1 -0.3189 -5.2862 -3.6519 37 1 0.1851 -3.5914 -3.9340 38 1 -1.1434 -2.7764 -2.1969 39 1 -2.0716 -4.2754 -2.4816 40 1 -0.5436 -3.5397 -0.1278 41 1 -1.4721 -5.0387 -0.4116 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052077199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:35 Heat of formation + Delta-G solvation = 3.850867 kcal Electronic energy + Delta-G solvation = -20617.436879 eV Core-core repulsion = 17691.356237 eV Total energy + Delta-G solvation = -2926.080642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.39302 -40.54056 -36.28700 -35.21997 -33.83971 -32.45000 -30.46866 -29.61084 -28.41292 -26.85405 -24.85741 -22.76909 -22.50672 -21.31364 -21.10911 -20.36077 -18.57966 -18.01757 -17.34171 -16.86475 -16.50301 -16.43959 -15.50898 -15.43716 -15.05946 -14.62558 -14.18597 -13.92895 -13.82715 -13.62700 -13.46969 -13.26895 -12.81353 -12.78224 -12.50713 -12.41861 -12.09901 -11.90734 -11.86940 -11.67645 -11.50840 -11.30097 -11.16806 -10.76707 -10.62744 -10.44267 -9.36876 -9.04984 -8.13225 -6.22730 0.86703 1.41151 1.43335 1.50793 1.77221 2.21679 2.43711 3.14089 3.20180 3.79392 3.86342 3.88691 4.12901 4.19322 4.21184 4.32927 4.43131 4.49900 4.61303 4.64119 4.66985 4.73774 4.84193 4.92191 5.00547 5.01572 5.07764 5.14694 5.17370 5.28074 5.28738 5.38539 5.50107 5.61250 5.61528 5.70435 5.77869 5.93886 6.19349 6.30028 6.38392 6.41990 6.94623 7.44817 8.97436 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.005474 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.886001 B = 5113.956871 C = 5775.966385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.030 3.970 10 C 0.072 3.928 11 N -0.545 5.545 12 C 0.128 3.872 13 C -0.012 4.012 14 C -0.214 4.214 15 C -0.223 4.223 16 C -0.050 4.050 17 O -0.196 6.196 18 C 0.091 3.909 19 C -0.165 4.165 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.131 4.131 23 H 0.261 0.739 24 H 0.034 0.966 25 H -0.017 1.017 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.233 0.767 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -17.192 -2.533 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.055 4.055 11 N -0.268 5.268 12 C 0.001 3.999 13 C -0.062 4.062 14 C -0.234 4.234 15 C -0.242 4.242 16 C -0.117 4.117 17 O -0.092 6.092 18 C -0.017 4.017 19 C -0.204 4.204 20 C -0.147 4.147 21 C -0.157 4.157 22 C -0.169 4.169 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.001 0.999 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.175 0.825 31 H 0.187 0.813 32 H 0.249 0.751 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.286 -16.858 -1.867 17.009 hybrid contribution 0.432 1.083 -0.446 1.248 sum 1.718 -15.775 -2.312 16.036 Atomic orbital electron populations 1.70092 1.07521 1.27411 1.51592 1.25807 0.95621 1.02697 0.94965 0.85644 0.78379 0.78868 0.78991 1.19204 1.21075 1.19631 1.21658 0.93340 0.92630 1.50574 0.92653 1.19266 0.94265 0.90941 0.96193 1.22180 0.96100 0.88108 0.99081 1.62036 1.20626 1.01692 1.42441 1.20483 0.93033 0.86867 0.99533 1.22498 1.04131 0.98944 0.80661 1.21828 1.03292 0.96895 1.01371 1.22129 1.06448 1.03482 0.92142 1.24764 0.97888 0.87144 1.01942 1.84023 1.58537 1.39528 1.27125 1.22603 0.92319 0.99270 0.87488 1.23363 0.98542 1.01949 0.96520 1.22187 0.94298 1.01312 0.96939 1.22024 0.99256 0.99523 0.94853 1.22469 0.96441 1.00129 0.97817 0.93055 0.94838 0.99851 0.92802 0.93854 0.89695 0.89592 0.82497 0.81256 0.75113 0.88830 0.90257 0.91243 0.89650 0.92255 0.94573 0.90793 0.91901 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.58 3.04 29.85 0.09 1.68 16 10 C 0.07 3.00 4.34 86.30 0.37 3.37 16 11 N -0.54 -19.71 4.43 -868.51 -3.84 -23.56 16 12 C 0.13 3.75 5.48 85.56 0.47 4.22 16 13 C -0.01 -0.34 6.57 24.83 0.16 -0.18 16 14 C -0.21 -5.31 9.55 22.19 0.21 -5.09 16 15 C -0.22 -4.82 10.91 22.19 0.24 -4.58 16 16 C -0.05 -1.12 12.09 66.97 0.81 -0.31 16 17 O -0.20 -5.87 10.65 -2.40 -0.03 -5.89 16 18 C 0.09 3.02 2.66 46.11 0.12 3.14 16 19 C -0.17 -5.19 5.36 32.01 0.17 -5.02 16 20 C -0.11 -3.20 6.82 31.67 0.22 -2.98 16 21 C -0.12 -4.09 6.24 31.32 0.20 -3.89 16 22 C -0.13 -4.94 5.65 31.32 0.18 -4.76 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.03 1.78 3.99 -2.39 -0.01 1.77 16 25 H -0.02 -1.00 7.38 -2.39 -0.02 -1.02 16 26 H 0.05 2.27 7.90 -2.39 -0.02 2.25 16 27 H 0.04 1.71 5.82 -2.39 -0.01 1.70 16 28 H 0.09 2.09 8.00 -2.39 -0.02 2.07 16 29 H 0.09 2.49 7.78 -2.39 -0.02 2.47 16 30 H 0.16 3.30 7.57 -2.91 -0.02 3.28 16 31 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.23 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.09 2.71 5.79 -2.38 -0.01 2.69 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.66 4.34 -2.39 -0.01 2.65 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.49 7.82 -2.38 -0.02 1.47 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 2.98 4.51 -2.39 -0.01 2.97 16 41 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -66.41 316.29 3.39 -63.02 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.01 Total: 19.89 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 3.94 Total: -44.07 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.56 Total: -79.47 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.03 Total: -5.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.41 3.39 -63.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052077199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.867 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds