Wall clock time and date at job start Mon Mar 30 2020 06:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38264 * 119.94052 * 2 1 4 4 C 1.38146 * 120.04961 * 179.97438 * 3 2 1 5 5 C 1.38732 * 119.95015 * 359.97438 * 4 3 2 6 6 O 1.35899 * 120.05860 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99822 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46877 * 179.97438 * 7 6 5 9 9 N 1.46908 * 109.47170 * 65.10408 * 8 7 6 10 10 C 1.46897 * 110.99969 * 199.80649 * 9 8 7 11 11 C 1.46901 * 110.99703 * 75.85378 * 9 8 7 12 12 C 1.52999 * 109.46773 * 189.99902 * 11 9 8 13 13 C 1.50700 * 109.47343 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99715 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99935 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47081 * 89.99521 * 17 15 13 19 19 H 1.48492 * 109.47394 * 209.99860 * 17 15 13 20 20 H 1.48500 * 109.46917 * 330.00226 * 17 15 13 21 21 C 1.38736 * 119.88282 * 0.25081 * 5 4 3 22 22 C 1.38143 * 119.94597 * 359.49811 * 21 5 4 23 23 H 1.09003 * 109.47016 * 90.00159 * 1 2 3 24 24 H 1.09001 * 109.46904 * 210.00193 * 1 2 3 25 25 H 1.08991 * 109.47166 * 330.00046 * 1 2 3 26 26 H 1.07992 * 119.97877 * 359.95099 * 3 2 1 27 27 H 1.08006 * 120.02586 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47021 * 299.99901 * 7 6 5 29 29 H 1.08999 * 109.46811 * 60.00279 * 7 6 5 30 30 H 1.09002 * 109.47069 * 185.10283 * 8 7 6 31 31 H 1.09004 * 109.47199 * 305.10437 * 8 7 6 32 32 H 1.09004 * 109.46887 * 54.02996 * 10 9 8 33 33 H 1.08996 * 109.47101 * 174.02515 * 10 9 8 34 34 H 1.09000 * 109.47539 * 294.03091 * 10 9 8 35 35 H 1.08995 * 109.46939 * 309.99817 * 11 9 8 36 36 H 1.09001 * 109.47226 * 70.00408 * 11 9 8 37 37 H 1.09000 * 109.47468 * 300.00149 * 12 11 9 38 38 H 1.09008 * 109.46945 * 59.99863 * 12 11 9 39 39 H 0.97001 * 119.99514 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.02625 * 179.72875 * 21 5 4 41 41 H 1.08000 * 119.97473 * 180.25295 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0000 0.0016 7 6 6.2812 -1.2733 0.0033 8 6 7.7980 -1.0728 0.0024 9 7 8.2076 -0.4286 1.2576 10 6 9.5286 0.1991 1.1205 11 6 8.1932 -1.3875 2.3704 12 6 8.3790 -0.6383 3.6915 13 6 8.3637 -1.6218 4.8332 14 1 8.2347 -2.6759 4.6362 15 6 8.5143 -1.1760 6.1292 16 7 8.6718 0.1074 6.3689 17 14 8.4960 -2.3952 7.5443 18 1 9.8790 -2.8670 7.8092 19 1 7.9571 -1.7345 8.7601 20 1 7.6375 -3.5535 7.1887 21 6 3.5786 -1.2008 -0.0031 22 6 2.1972 -1.1981 0.0016 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6558 2.1326 -0.0008 27 1 4.1173 2.1369 0.0001 28 1 5.9883 -1.8291 0.8941 29 1 5.9883 -1.8314 -0.8859 30 1 8.2923 -2.0401 -0.0877 31 1 8.0804 -0.4406 -0.8394 32 1 9.5217 0.8775 0.2674 33 1 9.7612 0.7577 2.0271 34 1 10.2830 -0.5721 0.9653 35 1 7.2396 -1.9152 2.3830 36 1 9.0039 -2.1048 2.2425 37 1 9.3327 -0.1105 3.6789 38 1 7.5684 0.0791 3.8194 39 1 8.7781 0.4210 7.2807 40 1 4.1172 -2.1369 -0.0067 41 1 1.6558 -2.1326 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053421440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:13 Heat of formation + Delta-G solvation = -21.129995 kcal Electronic energy + Delta-G solvation = -19327.395621 eV Core-core repulsion = 16400.231727 eV Total energy + Delta-G solvation = -2927.163893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00986 -37.94624 -36.72495 -33.09665 -32.06060 -31.00437 -30.30300 -29.03577 -26.26092 -25.51453 -24.23956 -22.71163 -21.59643 -20.94045 -19.71695 -18.06452 -16.47743 -16.00624 -15.76523 -15.29887 -14.73070 -14.50899 -14.27405 -14.23561 -13.87830 -13.59087 -13.43084 -13.07441 -12.59577 -12.28321 -12.14992 -12.05963 -11.82620 -11.47501 -11.35561 -11.15246 -11.02712 -10.89649 -10.61078 -10.52784 -10.46933 -9.78547 -9.36422 -9.09794 -8.94745 -8.31093 -7.90609 -7.70534 -5.97361 -3.99932 1.40011 1.50700 3.32795 3.39026 3.40850 3.42283 3.81881 4.36745 4.53692 4.80247 4.87711 4.99145 5.10425 5.21585 5.29866 5.37741 5.38416 5.43434 5.50381 5.54836 5.67275 5.74820 5.81405 5.85888 5.92079 5.98454 6.09448 6.26298 6.35341 6.42609 6.46025 6.52539 6.63622 6.87149 6.98498 7.49931 7.55374 7.65766 7.80788 7.92459 8.11365 8.45368 9.07342 9.63511 11.14041 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.004285 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.789997 B = 6532.878489 C = 7550.641066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.151 4.151 5 C 0.137 3.863 6 O -0.294 6.294 7 C 0.067 3.933 8 C 0.054 3.946 9 N -0.537 5.537 10 C 0.030 3.970 11 C 0.060 3.940 12 C 0.029 3.971 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.209 4.209 22 C -0.081 4.081 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.017 0.983 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.126 0.874 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 -1.019 -16.101 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C -0.099 4.099 4 C -0.169 4.169 5 C 0.090 3.910 6 O -0.206 6.206 7 C -0.009 4.009 8 C -0.075 4.075 9 N -0.261 5.261 10 C -0.118 4.118 11 C -0.066 4.066 12 C -0.009 4.009 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.228 4.228 22 C -0.099 4.099 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.144 0.856 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.934 -0.365 -15.851 19.260 hybrid contribution 0.617 -1.572 0.760 1.852 sum -10.318 -1.937 -15.091 18.384 Atomic orbital electron populations 1.20680 0.91395 1.02470 1.01745 1.19759 0.95983 0.93143 1.04874 1.20803 0.93039 0.97585 0.98518 1.20446 0.93679 0.96566 1.06246 1.19114 0.83166 0.93964 0.94720 1.86195 1.15233 1.31638 1.87556 1.22898 0.93119 0.84070 1.00805 1.22111 0.92509 0.98557 0.94284 1.62058 1.27702 1.33125 1.03249 1.22352 0.88734 0.98259 1.02493 1.22423 0.98967 0.93174 0.92056 1.19076 0.97601 0.95597 0.88600 1.21191 1.49911 0.93579 0.91482 0.92896 1.24986 0.95335 0.95089 0.98846 1.69976 1.49665 1.13215 1.20275 0.86611 0.78157 0.81303 0.82019 1.20713 1.21168 1.19920 1.21261 0.95311 0.97255 1.08965 1.20779 0.93332 0.97504 0.98253 0.91789 0.91914 0.91831 0.85707 0.85194 0.91519 0.92397 0.93041 0.90499 0.92527 0.90304 0.96417 0.92375 0.96216 0.96442 0.95679 0.93002 0.85632 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.14 -1.59 5.88 -104.60 -0.62 -2.20 16 3 C -0.08 -0.98 9.69 -39.61 -0.38 -1.36 16 4 C -0.15 -2.10 9.99 -39.43 -0.39 -2.50 16 5 C 0.14 2.08 6.69 -39.21 -0.26 1.81 16 6 O -0.29 -4.84 10.08 -19.42 -0.20 -5.03 16 7 C 0.07 0.95 4.93 37.16 0.18 1.14 16 8 C 0.05 0.79 5.39 -3.82 -0.02 0.77 16 9 N -0.54 -10.06 4.64 -242.91 -1.13 -11.19 16 10 C 0.03 0.51 9.25 60.06 0.56 1.07 16 11 C 0.06 1.30 4.72 -3.82 -0.02 1.28 16 12 C 0.03 0.76 4.89 -27.88 -0.14 0.63 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 22 C -0.08 -0.97 9.69 -39.61 -0.38 -1.35 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.07 1.02 6.20 -51.93 -0.32 0.70 16 29 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 30 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 31 H 0.08 1.02 7.80 -51.93 -0.40 0.62 16 32 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 33 H 0.08 1.51 6.57 -51.93 -0.34 1.17 16 34 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 35 H 0.06 1.23 6.57 -51.93 -0.34 0.89 16 36 H 0.02 0.42 8.11 -51.93 -0.42 -0.01 16 37 H 0.02 0.48 6.60 -51.93 -0.34 0.14 16 38 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -32.05 336.14 -9.07 -41.12 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.64 Total: -2.11 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.88 Total: -18.20 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.39 Total: -37.73 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.20 Total: -5.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.05 -9.07 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053421440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.991 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds