Wall clock time and date at job start Mon Mar 30 2020 06:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38264 * 119.94052 * 2 1 4 4 C 1.38146 * 120.04961 * 179.97438 * 3 2 1 5 5 C 1.38732 * 119.95015 * 359.97438 * 4 3 2 6 6 O 1.35899 * 120.05860 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99822 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46877 * 179.97438 * 7 6 5 9 9 N 1.46908 * 109.47170 * 65.10408 * 8 7 6 10 10 C 1.46897 * 110.99969 * 199.80649 * 9 8 7 11 11 C 1.46901 * 110.99703 * 75.85378 * 9 8 7 12 12 C 1.52999 * 109.46773 * 189.99902 * 11 9 8 13 13 C 1.50700 * 109.47343 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99715 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99935 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47081 * 89.99521 * 17 15 13 19 19 H 1.48492 * 109.47394 * 209.99860 * 17 15 13 20 20 H 1.48500 * 109.46917 * 330.00226 * 17 15 13 21 21 C 1.38736 * 119.88282 * 0.25081 * 5 4 3 22 22 C 1.38143 * 119.94597 * 359.49811 * 21 5 4 23 23 H 1.09003 * 109.47016 * 90.00159 * 1 2 3 24 24 H 1.09001 * 109.46904 * 210.00193 * 1 2 3 25 25 H 1.08991 * 109.47166 * 330.00046 * 1 2 3 26 26 H 1.07992 * 119.97877 * 359.95099 * 3 2 1 27 27 H 1.08006 * 120.02586 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47021 * 299.99901 * 7 6 5 29 29 H 1.08999 * 109.46811 * 60.00279 * 7 6 5 30 30 H 1.09002 * 109.47069 * 185.10283 * 8 7 6 31 31 H 1.09004 * 109.47199 * 305.10437 * 8 7 6 32 32 H 1.09004 * 109.46887 * 54.02996 * 10 9 8 33 33 H 1.08996 * 109.47101 * 174.02515 * 10 9 8 34 34 H 1.09000 * 109.47539 * 294.03091 * 10 9 8 35 35 H 1.08995 * 109.46939 * 309.99817 * 11 9 8 36 36 H 1.09001 * 109.47226 * 70.00408 * 11 9 8 37 37 H 1.09000 * 109.47468 * 300.00149 * 12 11 9 38 38 H 1.09008 * 109.46945 * 59.99863 * 12 11 9 39 39 H 0.97001 * 119.99514 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.02625 * 179.72875 * 21 5 4 41 41 H 1.08000 * 119.97473 * 180.25295 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0000 0.0016 7 6 6.2812 -1.2733 0.0033 8 6 7.7980 -1.0728 0.0024 9 7 8.2076 -0.4286 1.2576 10 6 9.5286 0.1991 1.1205 11 6 8.1932 -1.3875 2.3704 12 6 8.3790 -0.6383 3.6915 13 6 8.3637 -1.6218 4.8332 14 1 8.2347 -2.6759 4.6362 15 6 8.5143 -1.1760 6.1292 16 7 8.6718 0.1074 6.3689 17 14 8.4960 -2.3952 7.5443 18 1 9.8790 -2.8670 7.8092 19 1 7.9571 -1.7345 8.7601 20 1 7.6375 -3.5535 7.1887 21 6 3.5786 -1.2008 -0.0031 22 6 2.1972 -1.1981 0.0016 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6558 2.1326 -0.0008 27 1 4.1173 2.1369 0.0001 28 1 5.9883 -1.8291 0.8941 29 1 5.9883 -1.8314 -0.8859 30 1 8.2923 -2.0401 -0.0877 31 1 8.0804 -0.4406 -0.8394 32 1 9.5217 0.8775 0.2674 33 1 9.7612 0.7577 2.0271 34 1 10.2830 -0.5721 0.9653 35 1 7.2396 -1.9152 2.3830 36 1 9.0039 -2.1048 2.2425 37 1 9.3327 -0.1105 3.6789 38 1 7.5684 0.0791 3.8194 39 1 8.7781 0.4210 7.2807 40 1 4.1172 -2.1369 -0.0067 41 1 1.6558 -2.1326 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053421440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:13 Heat of formation + Delta-G solvation = -40.542787 kcal Electronic energy + Delta-G solvation = -19328.237422 eV Core-core repulsion = 16400.231727 eV Total energy + Delta-G solvation = -2928.005695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04891 -39.13748 -38.04818 -35.20608 -33.07141 -32.04517 -31.87815 -30.50269 -27.42575 -27.03465 -25.70101 -24.02838 -22.87839 -22.12790 -21.23923 -19.14266 -18.58379 -17.24213 -16.95007 -16.55864 -16.26773 -16.00517 -15.65996 -15.38171 -15.17854 -14.47487 -14.38161 -14.36331 -14.18558 -13.95092 -13.40434 -13.30544 -12.92870 -12.87896 -12.83646 -12.56694 -12.39452 -12.34330 -12.30547 -11.84510 -11.61715 -11.51598 -11.32269 -11.20991 -10.55177 -9.92280 -9.15826 -8.91020 -8.20794 -6.32816 0.42499 0.51916 1.38701 1.40863 1.51834 2.34940 2.39653 2.84055 3.07338 3.12451 3.84277 3.98039 4.01436 4.11757 4.12493 4.25979 4.36020 4.43490 4.46412 4.49016 4.52660 4.67123 4.72455 4.79001 4.81330 4.86922 4.91405 5.03336 5.11594 5.13285 5.21232 5.42020 5.44337 5.46501 5.63888 5.71738 5.77563 5.94892 6.08806 6.27754 6.32089 6.59324 6.84737 7.36498 8.91588 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.004285 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.789997 B = 6532.878489 C = 7550.641066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.086 4.086 4 C -0.171 4.171 5 C 0.106 3.894 6 O -0.319 6.319 7 C 0.066 3.934 8 C 0.055 3.945 9 N -0.558 5.558 10 C 0.033 3.967 11 C 0.079 3.921 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.218 4.218 22 C -0.088 4.088 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.127 0.873 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.059 0.941 36 H 0.026 0.974 37 H -0.005 1.005 38 H -0.016 1.016 39 H 0.264 0.736 40 H 0.135 0.865 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -2.688 -16.876 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.103 4.103 4 C -0.190 4.190 5 C 0.060 3.940 6 O -0.233 6.233 7 C -0.009 4.009 8 C -0.072 4.072 9 N -0.283 5.283 10 C -0.115 4.115 11 C -0.048 4.048 12 C 0.000 4.000 13 C -0.584 4.584 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.237 4.237 22 C -0.106 4.106 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.166 0.834 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.003 0.997 39 H 0.072 0.928 40 H 0.153 0.847 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.151 -2.042 -16.651 20.714 hybrid contribution 0.935 -0.987 0.946 1.656 sum -11.216 -3.029 -15.705 19.535 Atomic orbital electron populations 1.20741 0.88973 1.03428 1.02979 1.20206 0.97811 0.92720 1.03167 1.21134 0.92361 0.99085 0.97765 1.20670 0.94811 0.96352 1.07171 1.19411 0.82897 0.95089 0.96598 1.86141 1.16193 1.32790 1.88195 1.22977 0.92736 0.83700 1.01515 1.22237 0.92872 0.99663 0.92467 1.61931 1.28727 1.33153 1.04454 1.22314 0.88446 0.98725 1.02019 1.22023 0.99143 0.92914 0.90756 1.18896 0.94726 0.94845 0.91580 1.21635 1.49961 0.94283 0.92541 0.92072 1.25992 0.94587 0.97106 1.02045 1.70125 1.50467 1.15503 1.21140 0.85419 0.78763 0.78780 0.77911 1.19540 1.20745 1.18636 1.21464 0.96181 0.97061 1.08984 1.21151 0.92952 0.98909 0.97576 0.90295 0.90981 0.90918 0.83354 0.85524 0.93136 0.89206 0.90929 0.88681 0.89841 0.93466 0.95141 0.92261 0.95575 0.98687 0.99748 0.92763 0.84697 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.14 -2.96 5.88 -19.85 -0.12 -3.08 16 3 C -0.09 -1.97 9.69 22.25 0.22 -1.76 16 4 C -0.17 -4.86 9.99 22.37 0.22 -4.64 16 5 C 0.11 3.25 6.69 22.51 0.15 3.40 16 6 O -0.32 -10.66 10.08 -92.41 -0.93 -11.59 16 7 C 0.07 1.83 4.93 71.98 0.35 2.19 16 8 C 0.06 1.54 5.39 86.30 0.46 2.00 16 9 N -0.56 -20.93 4.64 -922.44 -4.28 -25.21 16 10 C 0.03 1.12 9.25 127.69 1.18 2.30 16 11 C 0.08 3.44 4.72 86.30 0.41 3.85 16 12 C 0.04 2.06 4.89 29.85 0.15 2.20 16 13 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 17 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.22 -5.76 9.04 22.37 0.20 -5.56 16 22 C -0.09 -1.98 9.69 22.25 0.22 -1.76 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 25 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.05 1.54 6.20 -2.39 -0.01 1.53 16 29 H 0.09 1.88 7.65 -2.39 -0.02 1.86 16 30 H 0.07 1.74 8.00 -2.39 -0.02 1.73 16 31 H 0.09 2.32 7.80 -2.38 -0.02 2.30 16 32 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 33 H 0.05 1.88 6.57 -2.39 -0.02 1.87 16 34 H 0.03 0.95 8.13 -2.39 -0.02 0.93 16 35 H 0.06 2.54 6.57 -2.39 -0.02 2.52 16 36 H 0.03 1.09 8.11 -2.39 -0.02 1.07 16 37 H -0.01 -0.31 6.60 -2.39 -0.02 -0.32 16 38 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.14 3.15 6.30 -2.91 -0.02 3.13 16 41 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -71.03 336.14 2.94 -68.09 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.99 Total: 12.76 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 4.85 Total: -32.89 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -4.00 Total: -83.40 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.93 Total: -11.59 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.03 2.94 -68.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053421440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.552 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds