Wall clock time and date at job start Mon Mar 30 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47341 * 2 1 4 4 C 1.38283 * 119.97064 * 270.02444 * 3 2 1 5 5 C 1.38252 * 120.11130 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.05227 * 359.67096 * 5 4 3 7 7 C 1.38716 * 119.94492 * 0.57898 * 6 5 4 8 8 O 1.35895 * 120.05571 * 179.72162 * 7 6 5 9 9 C 1.42909 * 117.00142 * 359.72571 * 8 7 6 10 10 C 1.52997 * 109.46921 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47883 * 54.05743 * 10 9 8 12 12 C 1.50701 * 109.47030 * 174.06041 * 10 9 8 13 13 H 1.08006 * 119.99729 * 359.06825 * 12 10 9 14 14 C 1.37879 * 120.00298 * 179.34740 * 12 10 9 15 15 N 1.31510 * 119.99856 * 6.38446 * 14 12 10 16 16 Si 1.86796 * 119.99909 * 186.38677 * 14 12 10 17 17 H 1.48499 * 109.47489 * 60.00248 * 16 14 12 18 18 H 1.48502 * 109.46868 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47473 * 299.99667 * 16 14 12 20 20 N 1.46904 * 109.47110 * 294.05615 * 10 9 8 21 21 C 1.46900 * 111.00076 * 310.14167 * 20 10 9 22 22 C 1.46900 * 110.99788 * 74.09891 * 20 10 9 23 23 C 1.38121 * 119.97193 * 90.00223 * 3 2 1 24 24 H 1.09005 * 109.46774 * 300.00130 * 1 2 3 25 25 H 1.08995 * 109.46515 * 59.99726 * 1 2 3 26 26 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46774 * 239.99869 * 2 1 3 28 28 H 1.09000 * 109.46923 * 120.00518 * 2 1 3 29 29 H 1.07994 * 119.94852 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.96983 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.03000 * 180.30175 * 6 5 4 32 32 H 1.08998 * 109.46842 * 60.00048 * 9 8 7 33 33 H 1.08995 * 109.46703 * 300.00163 * 9 8 7 34 34 H 0.97002 * 120.00253 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47093 * 66.12946 * 21 20 10 36 36 H 1.08998 * 109.46914 * 186.12659 * 21 20 10 37 37 H 1.09000 * 109.46975 * 306.13112 * 21 20 10 38 38 H 1.08995 * 109.47392 * 51.52430 * 22 20 10 39 39 H 1.08997 * 109.47019 * 171.52823 * 22 20 10 40 40 H 1.09001 * 109.47121 * 291.51888 * 22 20 10 41 41 H 1.08005 * 120.02864 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0722 -1.1979 5 6 2.7236 3.3755 -1.2013 6 6 2.9498 4.0325 -0.0072 7 6 2.7250 3.3795 1.1958 8 8 2.9521 4.0217 2.3717 9 6 3.4278 5.3671 2.2949 10 6 3.6240 5.9201 3.7079 11 1 4.2694 5.2489 4.2745 12 6 4.2619 7.2832 3.6297 13 1 4.5170 7.7057 2.6690 14 6 4.5252 7.9884 4.7849 15 7 4.3370 7.4236 5.9574 16 14 5.1492 9.7462 4.6842 17 1 4.1528 10.5852 3.9710 18 1 5.3526 10.2785 6.0555 19 1 6.4375 9.7728 3.9463 20 7 2.3207 6.0271 4.3772 21 6 1.3477 6.7254 3.5265 22 6 1.8210 4.7031 4.7712 23 6 2.2625 2.0713 1.1965 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0818 1.5619 -2.1324 30 1 2.9027 3.8820 -2.1382 31 1 3.3056 5.0522 -0.0102 32 1 2.7004 5.9797 1.7623 33 1 4.3785 5.3863 1.7622 34 1 4.5218 7.9198 6.7702 35 1 1.1361 6.1205 2.6447 36 1 0.4263 6.8871 4.0858 37 1 1.7589 7.6864 3.2177 38 1 2.5922 4.1760 5.3328 39 1 0.9340 4.8200 5.3937 40 1 1.5658 4.1308 3.8792 41 1 2.0829 1.5620 2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057521018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:24 Heat of formation + Delta-G solvation = -13.652846 kcal Electronic energy + Delta-G solvation = -20134.865581 eV Core-core repulsion = 17208.025921 eV Total energy + Delta-G solvation = -2926.839660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89218 -37.90162 -35.94808 -33.72310 -32.32690 -30.44652 -29.07747 -28.71803 -26.44772 -25.21245 -23.81900 -22.88869 -22.25788 -20.73349 -19.22548 -17.53867 -16.23036 -15.85218 -15.69441 -15.57701 -14.55531 -14.53177 -14.05724 -13.71889 -13.51578 -13.41281 -13.28015 -12.91905 -12.42051 -12.20809 -11.89942 -11.74307 -11.43095 -11.29183 -11.05523 -11.01379 -10.94267 -10.71525 -10.58167 -10.51501 -10.44701 -10.02119 -9.71954 -9.15555 -8.65135 -8.40518 -7.84088 -6.75296 -5.96901 -4.08961 1.48715 1.68707 3.32203 3.37720 3.38555 3.78907 3.94519 4.45585 4.76692 4.91758 5.09235 5.18767 5.27176 5.29484 5.40936 5.51778 5.62212 5.66067 5.68246 5.80877 5.90445 5.97380 6.08584 6.12618 6.20412 6.26689 6.36114 6.44521 6.49097 6.56374 6.63638 6.72969 6.80965 6.92025 6.94216 7.01219 7.39300 7.80273 7.95518 8.10056 8.50898 8.66259 9.01474 9.58789 11.10292 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.004536 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.489643 B = 6170.871550 C = 6632.450606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.048 4.048 4 C -0.171 4.171 5 C -0.078 4.078 6 C -0.217 4.217 7 C 0.144 3.856 8 O -0.307 6.307 9 C 0.027 3.973 10 C 0.228 3.772 11 H 0.050 0.950 12 C -0.538 4.538 13 H 0.055 0.945 14 C 0.091 3.909 15 N -0.846 5.846 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 N -0.504 5.504 21 C 0.038 3.962 22 C 0.029 3.971 23 C -0.160 4.160 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.259 0.741 35 H 0.001 0.999 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.024 0.976 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -10.715 -11.144 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.048 4.048 4 C -0.189 4.189 5 C -0.096 4.096 6 C -0.236 4.236 7 C 0.097 3.903 8 O -0.220 6.220 9 C -0.049 4.049 10 C 0.121 3.879 11 H 0.068 0.932 12 C -0.576 4.576 13 H 0.073 0.927 14 C -0.117 4.117 15 N -0.479 5.479 16 Si 0.714 3.286 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 N -0.227 5.227 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.179 4.179 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.600 -10.476 -10.263 15.698 hybrid contribution 0.256 0.799 -0.949 1.266 sum -5.344 -9.677 -11.211 15.744 Atomic orbital electron populations 1.21742 0.94748 1.01481 1.02381 1.20527 0.96168 0.92631 1.02715 1.19604 0.97135 0.95675 0.92434 1.20780 1.05454 0.95544 0.97163 1.20875 0.97074 0.94447 0.97246 1.21341 1.08377 1.01509 0.92343 1.19268 0.93027 0.92009 0.85986 1.86321 1.79555 1.29519 1.26622 1.24275 0.97492 0.78027 1.05128 1.19458 0.88007 0.96270 0.84159 0.93199 1.20604 1.42425 1.01782 0.92826 0.92675 1.24835 0.94124 0.97470 0.95257 1.70034 1.44640 1.36140 0.97118 0.86784 0.79232 0.85456 0.77141 1.20217 1.21231 1.20336 1.62360 1.02613 1.16092 1.41594 1.22173 0.95308 0.99465 0.94180 1.22365 0.98995 0.91830 0.98752 1.20279 1.06208 0.93113 0.98292 0.92377 0.92611 0.92538 0.91116 0.90984 0.86604 0.86312 0.85512 0.92601 0.92832 0.93070 0.98054 0.94085 0.91179 0.92743 0.94241 0.95802 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.97 16 2 C -0.08 -0.83 6.06 -27.88 -0.17 -1.00 16 3 C -0.05 -0.63 5.13 -104.65 -0.54 -1.17 16 4 C -0.17 -2.17 9.70 -39.56 -0.38 -2.55 16 5 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 6 C -0.22 -3.49 9.04 -39.43 -0.36 -3.84 16 7 C 0.14 2.53 6.69 -39.22 -0.26 2.27 16 8 O -0.31 -6.17 7.30 -19.41 -0.14 -6.31 16 9 C 0.03 0.57 3.58 37.16 0.13 0.70 16 10 C 0.23 5.64 1.97 -68.86 -0.14 5.51 16 11 H 0.05 1.38 7.87 -51.93 -0.41 0.97 16 12 C -0.54 -14.30 7.66 -34.44 -0.26 -14.56 16 13 H 0.06 1.43 7.75 -52.48 -0.41 1.02 16 14 C 0.09 2.47 5.34 -17.82 -0.10 2.37 16 15 N -0.85 -24.11 12.92 55.43 0.72 -23.39 16 16 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 N -0.50 -12.12 4.38 -244.58 -1.07 -13.19 16 21 C 0.04 0.81 8.57 60.06 0.51 1.32 16 22 C 0.03 0.63 9.00 60.06 0.54 1.17 16 23 C -0.16 -2.48 9.64 -39.44 -0.38 -2.86 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 32 H 0.06 1.15 5.59 -51.93 -0.29 0.86 16 33 H 0.05 1.11 7.67 -51.93 -0.40 0.71 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.00 0.03 6.46 -51.93 -0.34 -0.31 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.58 7.27 -51.93 -0.38 1.20 16 38 H 0.05 1.20 7.92 -51.93 -0.41 0.79 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.49 5.88 -51.93 -0.31 0.19 16 41 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -28.63 329.85 -8.59 -37.23 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.62 Total: 0.02 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.42 Total: -15.06 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.35 Total: -36.59 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.14 Total: -6.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.63 -8.59 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057521018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.574 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds