Wall clock time and date at job start Mon Mar 30 2020 07:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47341 * 2 1 4 4 C 1.38283 * 119.97064 * 270.02444 * 3 2 1 5 5 C 1.38252 * 120.11130 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.05227 * 359.67096 * 5 4 3 7 7 C 1.38716 * 119.94492 * 0.57898 * 6 5 4 8 8 O 1.35895 * 120.05571 * 179.72162 * 7 6 5 9 9 C 1.42909 * 117.00142 * 359.72571 * 8 7 6 10 10 C 1.52997 * 109.46921 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47883 * 54.05743 * 10 9 8 12 12 C 1.50701 * 109.47030 * 174.06041 * 10 9 8 13 13 H 1.08006 * 119.99729 * 359.06825 * 12 10 9 14 14 C 1.37879 * 120.00298 * 179.34740 * 12 10 9 15 15 N 1.31510 * 119.99856 * 6.38446 * 14 12 10 16 16 Si 1.86796 * 119.99909 * 186.38677 * 14 12 10 17 17 H 1.48499 * 109.47489 * 60.00248 * 16 14 12 18 18 H 1.48502 * 109.46868 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47473 * 299.99667 * 16 14 12 20 20 N 1.46904 * 109.47110 * 294.05615 * 10 9 8 21 21 C 1.46900 * 111.00076 * 310.14167 * 20 10 9 22 22 C 1.46900 * 110.99788 * 74.09891 * 20 10 9 23 23 C 1.38121 * 119.97193 * 90.00223 * 3 2 1 24 24 H 1.09005 * 109.46774 * 300.00130 * 1 2 3 25 25 H 1.08995 * 109.46515 * 59.99726 * 1 2 3 26 26 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46774 * 239.99869 * 2 1 3 28 28 H 1.09000 * 109.46923 * 120.00518 * 2 1 3 29 29 H 1.07994 * 119.94852 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.96983 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.03000 * 180.30175 * 6 5 4 32 32 H 1.08998 * 109.46842 * 60.00048 * 9 8 7 33 33 H 1.08995 * 109.46703 * 300.00163 * 9 8 7 34 34 H 0.97002 * 120.00253 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47093 * 66.12946 * 21 20 10 36 36 H 1.08998 * 109.46914 * 186.12659 * 21 20 10 37 37 H 1.09000 * 109.46975 * 306.13112 * 21 20 10 38 38 H 1.08995 * 109.47392 * 51.52430 * 22 20 10 39 39 H 1.08997 * 109.47019 * 171.52823 * 22 20 10 40 40 H 1.09001 * 109.47121 * 291.51888 * 22 20 10 41 41 H 1.08005 * 120.02864 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0722 -1.1979 5 6 2.7236 3.3755 -1.2013 6 6 2.9498 4.0325 -0.0072 7 6 2.7250 3.3795 1.1958 8 8 2.9521 4.0217 2.3717 9 6 3.4278 5.3671 2.2949 10 6 3.6240 5.9201 3.7079 11 1 4.2694 5.2489 4.2745 12 6 4.2619 7.2832 3.6297 13 1 4.5170 7.7057 2.6690 14 6 4.5252 7.9884 4.7849 15 7 4.3370 7.4236 5.9574 16 14 5.1492 9.7462 4.6842 17 1 4.1528 10.5852 3.9710 18 1 5.3526 10.2785 6.0555 19 1 6.4375 9.7728 3.9463 20 7 2.3207 6.0271 4.3772 21 6 1.3477 6.7254 3.5265 22 6 1.8210 4.7031 4.7712 23 6 2.2625 2.0713 1.1965 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0818 1.5619 -2.1324 30 1 2.9027 3.8820 -2.1382 31 1 3.3056 5.0522 -0.0102 32 1 2.7004 5.9797 1.7623 33 1 4.3785 5.3863 1.7622 34 1 4.5218 7.9198 6.7702 35 1 1.1361 6.1205 2.6447 36 1 0.4263 6.8871 4.0858 37 1 1.7589 7.6864 3.2177 38 1 2.5922 4.1760 5.3328 39 1 0.9340 4.8200 5.3937 40 1 1.5658 4.1308 3.8792 41 1 2.0829 1.5620 2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057521018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:23 Heat of formation + Delta-G solvation = -29.374564 kcal Electronic energy + Delta-G solvation = -20135.547326 eV Core-core repulsion = 17208.025921 eV Total energy + Delta-G solvation = -2927.521405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20792 -39.31941 -37.58292 -34.67760 -34.36580 -31.80290 -30.51943 -29.96337 -28.20784 -26.99685 -25.08479 -24.46170 -23.39604 -22.03975 -20.89046 -18.97814 -18.02109 -17.44529 -17.02052 -16.87132 -16.40328 -15.62702 -15.49517 -15.32195 -15.05455 -14.64448 -14.37512 -14.07465 -13.95742 -13.77958 -13.28038 -13.09099 -12.80946 -12.78103 -12.62406 -12.56397 -12.33252 -12.28383 -12.24009 -11.85948 -11.77711 -11.59631 -11.47463 -11.13159 -10.48769 -9.75514 -9.09726 -8.57400 -8.03137 -6.21861 0.37036 0.52610 1.45996 1.47716 1.54472 2.28537 2.55536 2.81344 3.18898 3.73971 3.83399 3.90337 4.12608 4.18287 4.25212 4.34798 4.41436 4.49666 4.52702 4.57650 4.61648 4.65261 4.68031 4.76830 4.80458 5.02863 5.08713 5.09680 5.12505 5.15898 5.18194 5.39269 5.41146 5.44793 5.52535 5.67432 5.72054 5.92080 6.09812 6.51579 6.59552 6.81752 7.01682 7.49748 9.03772 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.004536 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.489643 B = 6170.871550 C = 6632.450606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.046 4.046 4 C -0.163 4.163 5 C -0.078 4.078 6 C -0.232 4.232 7 C 0.108 3.892 8 O -0.325 6.325 9 C 0.048 3.952 10 C 0.230 3.770 11 H 0.009 0.991 12 C -0.550 4.550 13 H 0.057 0.943 14 C 0.044 3.956 15 N -0.881 5.881 16 Si 0.951 3.049 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.271 1.271 20 N -0.529 5.529 21 C 0.046 3.954 22 C 0.039 3.961 23 C -0.173 4.173 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.011 0.989 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -11.442 -13.468 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.046 4.046 4 C -0.181 4.181 5 C -0.096 4.096 6 C -0.251 4.251 7 C 0.063 3.937 8 O -0.239 6.239 9 C -0.029 4.029 10 C 0.123 3.877 11 H 0.027 0.973 12 C -0.588 4.588 13 H 0.076 0.924 14 C -0.161 4.161 15 N -0.516 5.516 16 Si 0.777 3.223 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.196 1.196 20 N -0.252 5.252 21 C -0.103 4.103 22 C -0.109 4.109 23 C -0.191 4.191 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.501 -11.214 -12.611 18.084 hybrid contribution 0.499 0.875 -0.325 1.058 sum -6.001 -10.339 -12.936 17.614 Atomic orbital electron populations 1.21731 0.93969 1.02638 1.01815 1.20616 0.96700 0.90613 1.03992 1.20013 0.95795 0.97091 0.91670 1.21234 1.03384 0.95116 0.98335 1.21236 0.96044 0.94962 0.97321 1.21427 1.09225 1.01523 0.92925 1.19581 0.95523 0.93042 0.85598 1.86232 1.80426 1.28787 1.28491 1.23760 0.97503 0.79068 1.02523 1.19174 0.87966 0.94943 0.85641 0.97336 1.20943 1.42332 1.02597 0.92969 0.92439 1.25593 0.94352 1.01268 0.94879 1.70175 1.46146 1.37599 0.97683 0.85753 0.78894 0.80634 0.77060 1.19559 1.21181 1.19600 1.62232 1.02902 1.17553 1.42524 1.22103 0.95150 0.98571 0.94459 1.22262 0.98857 0.90796 0.99013 1.20463 1.06632 0.92524 0.99505 0.93801 0.92329 0.90575 0.88885 0.90732 0.83159 0.83479 0.86222 0.92253 0.93200 0.93268 0.97047 0.92436 0.92515 0.94349 0.92642 0.95068 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.90 71.98 0.71 -1.51 16 2 C -0.08 -1.39 6.06 29.85 0.18 -1.21 16 3 C -0.05 -1.09 5.13 -19.88 -0.10 -1.19 16 4 C -0.16 -3.56 9.70 22.28 0.22 -3.35 16 5 C -0.08 -1.92 10.04 22.25 0.22 -1.69 16 6 C -0.23 -7.35 9.04 22.37 0.20 -7.15 16 7 C 0.11 3.84 6.69 22.51 0.15 3.99 16 8 O -0.33 -13.50 7.30 -92.37 -0.67 -14.18 16 9 C 0.05 2.09 3.58 71.98 0.26 2.35 16 10 C 0.23 11.82 1.97 44.17 0.09 11.90 16 11 H 0.01 0.51 7.87 -2.39 -0.02 0.49 16 12 C -0.55 -29.88 7.66 25.60 0.20 -29.68 16 13 H 0.06 3.01 7.75 -2.91 -0.02 2.99 16 14 C 0.04 2.40 5.34 84.66 0.45 2.85 16 15 N -0.88 -51.49 12.92 21.45 0.28 -51.21 16 16 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 N -0.53 -25.97 4.38 -927.73 -4.06 -30.03 16 21 C 0.05 1.96 8.57 127.69 1.09 3.05 16 22 C 0.04 1.71 9.00 127.69 1.15 2.86 16 23 C -0.17 -5.26 9.64 22.36 0.22 -5.05 16 24 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 1.20 8.09 -2.38 -0.02 1.18 16 28 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 29 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.12 3.86 6.30 -2.91 -0.02 3.84 16 32 H 0.06 2.50 5.59 -2.39 -0.01 2.49 16 33 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.01 0.46 6.46 -2.38 -0.02 0.44 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.56 7.27 -2.39 -0.02 2.54 16 38 H 0.04 1.75 7.92 -2.39 -0.02 1.73 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.03 1.31 5.88 -2.39 -0.01 1.30 16 41 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -62.71 329.85 3.59 -59.12 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.99 Total: 15.13 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 5.04 Total: -23.83 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.78 Total: -81.25 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.67 Total: -14.18 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.71 3.59 -59.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057521018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.746 kcal (2) G-P(sol) polarization free energy of solvation -62.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds