Wall clock time and date at job start Mon Mar 30 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46977 * 2 1 4 4 C 1.38267 * 119.94847 * 89.99906 * 3 2 1 5 5 C 1.38135 * 120.05844 * 179.97438 * 4 3 2 6 6 C 1.38734 * 119.94539 * 359.97438 * 5 4 3 7 7 O 1.35908 * 120.05849 * 180.02562 * 6 5 4 8 8 C 1.42898 * 116.99858 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46622 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47070 * 55.00159 * 9 8 7 11 11 C 1.50703 * 109.46966 * 175.00069 * 9 8 7 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99873 * 180.02562 * 11 9 8 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47197 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47693 * 210.00055 * 15 13 11 18 18 H 1.48508 * 109.46868 * 330.00146 * 15 13 11 19 19 N 1.46899 * 109.47394 * 295.00121 * 9 8 7 20 20 C 1.46908 * 110.99885 * 310.00202 * 19 9 8 21 21 C 1.46897 * 111.00089 * 73.95336 * 19 9 8 22 22 C 1.38732 * 119.88860 * 0.28218 * 6 5 4 23 23 C 1.38146 * 119.93967 * 359.46287 * 22 6 5 24 24 H 1.09003 * 109.47062 * 60.00365 * 1 2 3 25 25 H 1.08998 * 109.47189 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 300.00689 * 1 2 3 27 27 H 1.08996 * 109.47443 * 239.99811 * 2 1 3 28 28 H 1.09003 * 109.47062 * 119.99635 * 2 1 3 29 29 H 1.08005 * 119.96622 * 0.02562 * 4 3 2 30 30 H 1.08007 * 120.03017 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47249 * 60.00252 * 8 7 6 32 32 H 1.08996 * 109.47475 * 299.99797 * 8 7 6 33 33 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.46994 * 63.95101 * 20 19 9 35 35 H 1.09000 * 109.47039 * 183.95112 * 20 19 9 36 36 H 1.09002 * 109.46750 * 303.95493 * 20 19 9 37 37 H 1.08998 * 109.46903 * 56.04498 * 21 19 9 38 38 H 1.09004 * 109.47219 * 176.04464 * 21 19 9 39 39 H 1.09000 * 109.47562 * 296.04896 * 21 19 9 40 40 H 1.08001 * 120.03178 * 179.71996 * 22 6 5 41 41 H 1.08003 * 119.97247 * 180.23397 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0716 1.1980 5 6 2.7232 3.3738 1.2007 6 6 2.9558 4.0285 -0.0001 7 8 3.4098 5.3095 -0.0002 8 6 3.6265 5.9209 -1.2735 9 6 4.1326 7.3508 -1.0730 10 1 5.0205 7.3367 -0.4408 11 6 4.4776 7.9537 -2.4104 12 1 4.3484 7.3750 -3.3131 13 6 4.9582 9.2440 -2.4815 14 7 5.1151 9.9489 -1.3824 15 14 5.3866 9.9911 -4.1392 16 1 4.1908 10.6699 -4.7001 17 1 6.4822 10.9789 -3.9689 18 1 5.8272 8.9181 -5.0666 19 7 3.0856 8.1551 -0.4288 20 6 1.8022 8.0057 -1.1278 21 6 2.9545 7.8076 0.9924 22 6 2.7192 3.3752 -1.2009 23 6 2.2633 2.0712 -1.1981 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0822 1.5610 2.1326 30 1 2.9024 3.8819 2.1368 31 1 2.6898 5.9422 -1.8305 32 1 4.3675 5.3476 -1.8304 33 1 5.4535 10.8566 -1.4325 34 1 1.4644 6.9723 -1.0504 35 1 1.0623 8.6648 -0.6737 36 1 1.9277 8.2693 -2.1780 37 1 3.9190 7.9268 1.4861 38 1 2.2226 8.4654 1.4613 39 1 2.6247 6.7728 1.0846 40 1 2.8952 3.8843 -2.1370 41 1 2.0825 1.5608 -2.1326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057521023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:29 Heat of formation + Delta-G solvation = -12.456395 kcal Electronic energy + Delta-G solvation = -20044.693325 eV Core-core repulsion = 17117.905547 eV Total energy + Delta-G solvation = -2926.787778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88976 -37.93280 -35.97190 -33.40721 -32.31938 -30.89426 -29.37726 -28.25270 -26.42726 -25.21014 -23.48586 -23.12067 -22.28683 -20.67923 -19.32615 -17.85234 -16.16901 -15.87379 -15.62754 -15.38973 -14.55799 -14.30958 -14.02063 -13.74324 -13.54090 -13.48709 -13.14990 -13.09417 -12.49009 -12.33715 -12.04331 -11.72161 -11.33132 -11.26760 -11.02567 -10.96532 -10.94384 -10.68995 -10.54938 -10.50676 -10.45561 -9.98157 -9.71618 -9.09107 -8.82725 -8.44954 -7.73961 -6.70989 -5.94189 -4.09349 1.52081 1.64083 3.30799 3.37914 3.39038 3.81273 3.93994 4.45557 4.80357 4.85231 5.08521 5.16480 5.20077 5.28759 5.47579 5.50608 5.60460 5.64746 5.75893 5.80911 5.93539 5.94858 6.07464 6.12277 6.18947 6.26011 6.37849 6.44858 6.49187 6.50658 6.61757 6.75231 6.83374 6.94643 6.96410 7.02124 7.38336 7.80602 7.95412 8.10300 8.52453 8.68005 9.02199 9.58711 11.11130 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.004342 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.366743 B = 6446.953166 C = 6859.731607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.080 4.080 5 C -0.160 4.160 6 C 0.137 3.863 7 O -0.306 6.306 8 C 0.026 3.974 9 C 0.228 3.772 10 H 0.049 0.951 11 C -0.536 4.536 12 H 0.055 0.945 13 C 0.088 3.912 14 N -0.843 5.843 15 Si 0.887 3.113 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.501 5.501 20 C 0.039 3.961 21 C 0.026 3.974 22 C -0.209 4.209 23 C -0.078 4.078 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.258 0.742 34 H 0.001 0.999 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.128 0.872 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -15.132 3.116 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.139 4.139 4 C -0.099 4.099 5 C -0.178 4.178 6 C 0.090 3.910 7 O -0.220 6.220 8 C -0.050 4.050 9 C 0.121 3.879 10 H 0.067 0.933 11 C -0.575 4.575 12 H 0.074 0.926 13 C -0.120 4.120 14 N -0.477 5.477 15 Si 0.714 3.286 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.200 1.200 19 N -0.223 5.223 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.228 4.228 23 C -0.096 4.096 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.145 0.855 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.647 -14.291 3.342 16.112 hybrid contribution -0.076 -0.340 -1.110 1.164 sum -6.723 -14.631 2.232 16.256 Atomic orbital electron populations 1.21765 0.95228 1.01207 1.02211 1.20407 0.95783 0.92885 1.02269 1.19669 1.04366 0.96682 0.93140 1.20739 0.98038 0.93700 0.97383 1.20434 1.05757 0.95170 0.96472 1.19320 0.92652 0.85316 0.93702 1.86344 1.79019 1.22402 1.34188 1.24282 1.00090 0.98079 0.82537 1.19471 0.90865 0.81343 0.96215 0.93341 1.20655 1.46502 0.99479 0.90862 0.92632 1.24869 0.94390 0.96816 0.95917 1.70084 1.41693 1.09373 1.26561 0.86711 0.78127 0.79174 0.84559 1.20625 1.21177 1.19960 1.62369 1.04664 1.55475 0.99838 1.22161 0.91838 0.96507 1.00513 1.22422 1.00355 0.97634 0.91861 1.21337 1.07131 0.96590 0.97743 1.20763 0.97582 0.93880 0.97346 0.92661 0.92802 0.92646 0.91522 0.91491 0.86065 0.85568 0.92587 0.92860 0.93215 0.98104 0.94142 0.91259 0.92833 0.94290 0.95425 0.85457 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.14 -1.73 5.13 -104.60 -0.54 -2.26 16 4 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 5 C -0.16 -2.43 9.99 -39.44 -0.39 -2.82 16 6 C 0.14 2.39 6.69 -39.22 -0.26 2.13 16 7 O -0.31 -6.13 7.15 -19.45 -0.14 -6.27 16 8 C 0.03 0.55 3.56 37.16 0.13 0.69 16 9 C 0.23 5.64 2.01 -68.86 -0.14 5.51 16 10 H 0.05 1.33 7.94 -51.93 -0.41 0.92 16 11 C -0.54 -14.25 7.69 -34.44 -0.26 -14.52 16 12 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 13 C 0.09 2.38 5.39 -17.82 -0.10 2.29 16 14 N -0.84 -24.06 12.77 55.43 0.71 -23.35 16 15 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 N -0.50 -12.10 4.25 -244.58 -1.04 -13.14 16 20 C 0.04 0.84 8.64 60.07 0.52 1.35 16 21 C 0.03 0.56 9.10 60.06 0.55 1.10 16 22 C -0.21 -3.34 9.04 -39.43 -0.36 -3.70 16 23 C -0.08 -1.05 9.69 -39.60 -0.38 -1.44 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 30 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.06 1.16 5.60 -51.93 -0.29 0.87 16 32 H 0.05 1.10 7.67 -51.93 -0.40 0.70 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.00 0.02 6.34 -51.93 -0.33 -0.31 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.57 7.32 -51.93 -0.38 1.19 16 37 H 0.05 1.18 8.02 -51.93 -0.42 0.76 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.58 5.56 -51.93 -0.29 0.29 16 40 H 0.13 2.03 6.30 -52.49 -0.33 1.69 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -28.65 329.45 -8.56 -37.20 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.61 Total: -0.24 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.42 Total: -14.90 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.33 Total: -36.49 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.14 Total: -6.27 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.65 -8.56 -37.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057521023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds