Wall clock time and date at job start Mon Mar 30 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46977 * 2 1 4 4 C 1.38267 * 119.94847 * 89.99906 * 3 2 1 5 5 C 1.38135 * 120.05844 * 179.97438 * 4 3 2 6 6 C 1.38734 * 119.94539 * 359.97438 * 5 4 3 7 7 O 1.35908 * 120.05849 * 180.02562 * 6 5 4 8 8 C 1.42898 * 116.99858 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46622 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47070 * 55.00159 * 9 8 7 11 11 C 1.50703 * 109.46966 * 175.00069 * 9 8 7 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99873 * 180.02562 * 11 9 8 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47197 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47693 * 210.00055 * 15 13 11 18 18 H 1.48508 * 109.46868 * 330.00146 * 15 13 11 19 19 N 1.46899 * 109.47394 * 295.00121 * 9 8 7 20 20 C 1.46908 * 110.99885 * 310.00202 * 19 9 8 21 21 C 1.46897 * 111.00089 * 73.95336 * 19 9 8 22 22 C 1.38732 * 119.88860 * 0.28218 * 6 5 4 23 23 C 1.38146 * 119.93967 * 359.46287 * 22 6 5 24 24 H 1.09003 * 109.47062 * 60.00365 * 1 2 3 25 25 H 1.08998 * 109.47189 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 300.00689 * 1 2 3 27 27 H 1.08996 * 109.47443 * 239.99811 * 2 1 3 28 28 H 1.09003 * 109.47062 * 119.99635 * 2 1 3 29 29 H 1.08005 * 119.96622 * 0.02562 * 4 3 2 30 30 H 1.08007 * 120.03017 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47249 * 60.00252 * 8 7 6 32 32 H 1.08996 * 109.47475 * 299.99797 * 8 7 6 33 33 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.46994 * 63.95101 * 20 19 9 35 35 H 1.09000 * 109.47039 * 183.95112 * 20 19 9 36 36 H 1.09002 * 109.46750 * 303.95493 * 20 19 9 37 37 H 1.08998 * 109.46903 * 56.04498 * 21 19 9 38 38 H 1.09004 * 109.47219 * 176.04464 * 21 19 9 39 39 H 1.09000 * 109.47562 * 296.04896 * 21 19 9 40 40 H 1.08001 * 120.03178 * 179.71996 * 22 6 5 41 41 H 1.08003 * 119.97247 * 180.23397 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0716 1.1980 5 6 2.7232 3.3738 1.2007 6 6 2.9558 4.0285 -0.0001 7 8 3.4098 5.3095 -0.0002 8 6 3.6265 5.9209 -1.2735 9 6 4.1326 7.3508 -1.0730 10 1 5.0205 7.3367 -0.4408 11 6 4.4776 7.9537 -2.4104 12 1 4.3484 7.3750 -3.3131 13 6 4.9582 9.2440 -2.4815 14 7 5.1151 9.9489 -1.3824 15 14 5.3866 9.9911 -4.1392 16 1 4.1908 10.6699 -4.7001 17 1 6.4822 10.9789 -3.9689 18 1 5.8272 8.9181 -5.0666 19 7 3.0856 8.1551 -0.4288 20 6 1.8022 8.0057 -1.1278 21 6 2.9545 7.8076 0.9924 22 6 2.7192 3.3752 -1.2009 23 6 2.2633 2.0712 -1.1981 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0822 1.5610 2.1326 30 1 2.9024 3.8819 2.1368 31 1 2.6898 5.9422 -1.8305 32 1 4.3675 5.3476 -1.8304 33 1 5.4535 10.8566 -1.4325 34 1 1.4644 6.9723 -1.0504 35 1 1.0623 8.6648 -0.6737 36 1 1.9277 8.2693 -2.1780 37 1 3.9190 7.9268 1.4861 38 1 2.2226 8.4654 1.4613 39 1 2.6247 6.7728 1.0846 40 1 2.8952 3.8843 -2.1370 41 1 2.0825 1.5608 -2.1326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057521023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:29 Heat of formation + Delta-G solvation = -28.032343 kcal Electronic energy + Delta-G solvation = -20045.368749 eV Core-core repulsion = 17117.905547 eV Total energy + Delta-G solvation = -2927.463202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19887 -39.32971 -37.59788 -34.39634 -34.31894 -32.05235 -31.05081 -29.42871 -28.18722 -26.98941 -24.93243 -24.39261 -23.56789 -21.79400 -21.07086 -19.29021 -18.07437 -17.46221 -17.02730 -16.44063 -16.39177 -15.54986 -15.43777 -15.27022 -15.07144 -14.68237 -14.29222 -14.14849 -13.99911 -13.74290 -13.48773 -13.10898 -12.87888 -12.82856 -12.66014 -12.51852 -12.31952 -12.22096 -12.00246 -11.85077 -11.76992 -11.58664 -11.41039 -11.07403 -10.52878 -9.94452 -8.96509 -8.53286 -8.00090 -6.22143 0.40145 0.49370 1.45668 1.46308 1.55667 2.29763 2.56038 2.81224 3.19504 3.76509 3.86812 3.93388 3.99842 4.16346 4.28080 4.36947 4.45036 4.49529 4.57102 4.60563 4.62935 4.67621 4.70944 4.78496 4.86397 5.03121 5.06946 5.12155 5.14224 5.17216 5.20771 5.37694 5.41753 5.44358 5.49855 5.72056 5.72668 5.92512 6.10007 6.52023 6.60767 6.83676 7.03124 7.49741 9.04750 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.004342 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.366743 B = 6446.953166 C = 6859.731607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.129 4.129 4 C -0.078 4.078 5 C -0.167 4.167 6 C 0.098 3.902 7 O -0.324 6.324 8 C 0.047 3.953 9 C 0.229 3.771 10 H 0.009 0.991 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.040 3.960 14 N -0.879 5.879 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.267 1.267 19 N -0.527 5.527 20 C 0.047 3.953 21 C 0.035 3.965 22 C -0.221 4.221 23 C -0.082 4.082 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.257 0.743 34 H 0.011 0.989 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.120 0.880 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 -17.301 2.839 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.129 4.129 4 C -0.096 4.096 5 C -0.186 4.186 6 C 0.053 3.947 7 O -0.238 6.238 8 C -0.029 4.029 9 C 0.122 3.878 10 H 0.027 0.973 11 C -0.587 4.587 12 H 0.075 0.925 13 C -0.165 4.165 14 N -0.514 5.514 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.250 5.250 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.240 4.240 23 C -0.100 4.100 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.170 0.830 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.138 0.862 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.941 -16.487 3.063 18.554 hybrid contribution 0.274 0.166 -0.950 1.002 sum -7.667 -16.321 2.113 18.155 Atomic orbital electron populations 1.21755 0.94475 1.02344 1.01728 1.20494 0.96275 0.90737 1.03713 1.20124 1.02204 0.98094 0.92466 1.21116 0.96697 0.92692 0.99052 1.20652 1.05890 0.96206 0.95843 1.19622 0.95137 0.84631 0.95288 1.86248 1.80257 1.24241 1.33061 1.23759 0.99806 0.96153 0.83198 1.19193 0.90073 0.83724 0.94769 0.97330 1.20986 1.46205 0.99771 0.91698 0.92466 1.25627 0.94301 0.97293 0.99232 1.70222 1.42903 1.09578 1.28662 0.85676 0.77791 0.78314 0.80435 1.20222 1.21063 1.19150 1.62234 1.05514 1.56151 1.01098 1.22083 0.91104 0.97479 0.99483 1.22325 0.99961 0.98501 0.90538 1.21404 1.07879 0.97767 0.96929 1.21070 0.96886 0.92972 0.99044 0.93378 0.90921 0.92947 0.90381 0.89863 0.82955 0.85250 0.92332 0.93190 0.93372 0.97071 0.92518 0.92709 0.94398 0.92663 0.94618 0.86230 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.07 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.13 -2.84 5.13 -19.85 -0.10 -2.94 16 4 C -0.08 -1.81 9.69 22.25 0.22 -1.59 16 5 C -0.17 -4.94 9.99 22.36 0.22 -4.72 16 6 C 0.10 3.45 6.69 22.51 0.15 3.60 16 7 O -0.32 -13.30 7.15 -92.51 -0.66 -13.97 16 8 C 0.05 2.06 3.56 71.98 0.26 2.31 16 9 C 0.23 11.78 2.01 44.17 0.09 11.87 16 10 H 0.01 0.51 7.94 -2.39 -0.02 0.49 16 11 C -0.55 -29.77 7.69 25.60 0.20 -29.57 16 12 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 13 C 0.04 2.19 5.39 84.65 0.46 2.65 16 14 N -0.88 -51.32 12.77 21.44 0.27 -51.04 16 15 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 N -0.53 -25.96 4.25 -927.71 -3.94 -29.90 16 20 C 0.05 2.03 8.64 127.69 1.10 3.13 16 21 C 0.04 1.53 9.10 127.69 1.16 2.70 16 22 C -0.22 -6.98 9.04 22.37 0.20 -6.78 16 23 C -0.08 -2.06 9.69 22.25 0.22 -1.84 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 1.04 8.08 -2.39 -0.02 1.03 16 28 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.06 2.47 5.60 -2.39 -0.01 2.46 16 32 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 33 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.01 0.45 6.34 -2.39 -0.02 0.44 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.49 7.32 -2.39 -0.02 2.48 16 37 H 0.04 1.72 8.02 -2.39 -0.02 1.71 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.04 1.50 5.56 -2.39 -0.01 1.49 16 40 H 0.12 3.86 6.30 -2.91 -0.02 3.84 16 41 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -62.44 329.45 3.75 -58.69 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.99 Total: 14.60 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.06 Total: -23.44 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.67 Total: -80.94 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.66 Total: -13.97 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.44 3.75 -58.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057521023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.661 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds