Wall clock time and date at job start Mon Mar 30 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46960 * 2 1 4 4 C 1.38273 * 119.94428 * 90.00674 * 3 2 1 5 5 C 1.38144 * 120.05653 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.94074 * 359.97438 * 5 4 3 7 7 O 1.35906 * 120.05223 * 180.02562 * 6 5 4 8 8 C 1.42897 * 116.99933 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47216 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46376 * 304.99770 * 9 8 7 11 11 C 1.50701 * 109.47211 * 185.00201 * 9 8 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 9 8 14 14 N 1.31523 * 119.99908 * 179.72112 * 13 11 9 15 15 Si 1.86800 * 120.00405 * 359.71709 * 13 11 9 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 N 1.46898 * 109.47472 * 64.99450 * 9 8 7 20 20 C 1.46900 * 111.00072 * 295.00639 * 19 9 8 21 21 C 1.46909 * 110.99662 * 58.95677 * 19 9 8 22 22 C 1.38733 * 119.89311 * 0.28528 * 6 5 4 23 23 C 1.38145 * 119.94172 * 359.46260 * 22 6 5 24 24 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47020 * 299.99884 * 1 2 3 26 26 H 1.08997 * 109.47474 * 59.99620 * 1 2 3 27 27 H 1.08998 * 109.46911 * 239.99575 * 2 1 3 28 28 H 1.09000 * 109.46754 * 120.00440 * 2 1 3 29 29 H 1.08004 * 119.97029 * 0.02562 * 4 3 2 30 30 H 1.07993 * 120.02624 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47481 * 60.00414 * 8 7 6 32 32 H 1.09000 * 109.47073 * 299.99884 * 8 7 6 33 33 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47450 * 63.95036 * 20 19 9 35 35 H 1.08998 * 109.46986 * 183.94953 * 20 19 9 36 36 H 1.08999 * 109.46807 * 303.95069 * 20 19 9 37 37 H 1.08995 * 109.47051 * 56.04377 * 21 19 9 38 38 H 1.08999 * 109.46999 * 176.04841 * 21 19 9 39 39 H 1.08996 * 109.47060 * 296.04611 * 21 19 9 40 40 H 1.07998 * 120.02508 * 179.71918 * 22 6 5 41 41 H 1.07992 * 119.97069 * 180.23434 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2625 2.0715 1.1982 5 6 2.7224 3.3741 1.2009 6 6 2.9538 4.0292 0.0001 7 8 3.4068 5.3105 0.0001 8 6 3.6224 5.9224 -1.2731 9 6 4.1287 7.3523 -1.0727 10 1 3.4299 7.8997 -0.4401 11 6 4.2390 8.0382 -2.4100 12 1 3.9748 7.5073 -3.3126 13 6 4.6830 9.3415 -2.4816 14 7 4.7845 9.9384 -3.6492 15 14 5.1404 10.2596 -0.9204 16 1 6.5801 10.0472 -0.6250 17 1 4.8818 11.7103 -1.1054 18 1 4.3229 9.7513 0.2103 19 7 5.4487 7.3187 -0.4291 20 6 5.3589 6.7632 0.9279 21 6 6.4123 6.5659 -1.2434 22 6 2.7170 3.3760 -1.2007 23 6 2.2620 2.0716 -1.1981 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.0825 1.5608 2.1327 30 1 2.9016 3.8820 2.1369 31 1 2.6854 5.9431 -1.8296 32 1 4.3636 5.3497 -1.8306 33 1 5.0966 10.8554 -3.6996 34 1 5.0346 5.7239 0.8744 35 1 6.3366 6.8145 1.4069 36 1 4.6388 7.3391 1.5092 37 1 6.4592 6.9980 -2.2429 38 1 7.3974 6.6158 -0.7793 39 1 6.0954 5.5253 -1.3119 40 1 2.8921 3.8854 -2.1367 41 1 2.0811 1.5614 -2.1325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057521028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:32 Heat of formation + Delta-G solvation = -12.176384 kcal Electronic energy + Delta-G solvation = -20127.187588 eV Core-core repulsion = 17200.411953 eV Total energy + Delta-G solvation = -2926.775636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01729 -38.13981 -36.28692 -33.47809 -32.40958 -30.97197 -29.68798 -28.43763 -26.68954 -25.51837 -23.53723 -23.05638 -22.46716 -20.74689 -19.34532 -18.00620 -16.57693 -16.14294 -15.74145 -15.46096 -14.55622 -14.32930 -14.13022 -14.02090 -13.66348 -13.47169 -13.19993 -13.14936 -12.78995 -12.43621 -12.26161 -11.91887 -11.53239 -11.41720 -11.17692 -11.00160 -10.95697 -10.73853 -10.63241 -10.51018 -10.42039 -9.97432 -9.67990 -9.26583 -8.89257 -8.59439 -7.83509 -7.24177 -6.10017 -4.20865 1.45417 1.56412 3.53936 3.58139 3.68041 3.71646 3.86816 4.59111 4.75625 4.80338 4.93959 5.02233 5.11436 5.24900 5.42865 5.43426 5.45282 5.54746 5.71164 5.73445 5.78864 5.89276 5.93831 6.02059 6.05145 6.13247 6.16682 6.20517 6.27993 6.41626 6.50240 6.55085 6.69358 6.72278 6.79060 6.94452 7.09072 7.48973 7.80323 7.98377 8.16062 8.45236 8.84405 9.52258 10.98497 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.004483 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.578081 B = 6244.048762 C = 6563.086386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.136 4.136 4 C -0.081 4.081 5 C -0.159 4.159 6 C 0.134 3.866 7 O -0.308 6.308 8 C 0.037 3.963 9 C 0.187 3.813 10 H 0.053 0.947 11 C -0.524 4.524 12 H 0.074 0.926 13 C 0.088 3.912 14 N -0.895 5.895 15 Si 0.928 3.072 16 H -0.277 1.277 17 H -0.315 1.315 18 H -0.270 1.270 19 N -0.541 5.541 20 C 0.015 3.985 21 C 0.036 3.964 22 C -0.207 4.207 23 C -0.077 4.077 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.011 0.989 40 H 0.129 0.871 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -16.661 8.133 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.136 4.136 4 C -0.099 4.099 5 C -0.177 4.177 6 C 0.087 3.913 7 O -0.222 6.222 8 C -0.039 4.039 9 C 0.081 3.919 10 H 0.071 0.929 11 C -0.562 4.562 12 H 0.092 0.908 13 C -0.117 4.117 14 N -0.531 5.531 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.244 1.244 18 H -0.196 1.196 19 N -0.265 5.265 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.226 4.226 23 C -0.095 4.095 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.147 0.853 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.165 -15.879 8.229 18.364 hybrid contribution 0.023 -0.311 0.350 0.469 sum -4.142 -16.190 8.579 18.785 Atomic orbital electron populations 1.21766 0.95157 1.01267 1.02237 1.20417 0.95842 0.92831 1.02321 1.19691 1.04068 0.96707 0.93124 1.20748 0.98044 0.93682 0.97421 1.20419 1.05729 0.95193 0.96381 1.19268 0.92895 0.85317 0.93775 1.86340 1.78590 1.23251 1.34004 1.23916 1.00448 0.96994 0.82512 1.20001 0.86592 0.88500 0.96803 0.92873 1.20572 1.47203 0.97930 0.90464 0.90808 1.24909 0.92956 0.97077 0.96720 1.69936 1.45413 1.13181 1.24574 0.85979 0.79923 0.75179 0.83029 1.20277 1.24423 1.19565 1.62353 1.10697 1.51548 1.01923 1.22559 0.99891 0.99059 0.91765 1.22172 0.94349 0.94698 1.00038 1.21355 1.06889 0.96604 0.97744 1.20781 0.97471 0.93859 0.97420 0.92761 0.92644 0.92609 0.91464 0.91471 0.86019 0.85581 0.92150 0.92233 0.92478 0.93632 0.93658 0.92718 0.89756 0.93695 0.97067 0.85332 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.14 -1.62 5.13 -104.60 -0.54 -2.16 16 4 C -0.08 -0.99 9.69 -39.60 -0.38 -1.37 16 5 C -0.16 -2.26 9.99 -39.43 -0.39 -2.66 16 6 C 0.13 2.20 6.69 -39.22 -0.26 1.94 16 7 O -0.31 -5.74 6.74 -19.44 -0.13 -5.87 16 8 C 0.04 0.74 3.75 37.16 0.14 0.88 16 9 C 0.19 4.35 1.57 -68.86 -0.11 4.24 16 10 H 0.05 1.31 7.17 -51.93 -0.37 0.93 16 11 C -0.52 -14.09 7.80 -34.44 -0.27 -14.36 16 12 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 13 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 14 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 15 Si 0.93 23.51 26.02 -169.99 -4.42 19.09 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 17 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 18 H -0.27 -6.73 6.55 56.52 0.37 -6.36 16 19 N -0.54 -11.95 2.53 -244.58 -0.62 -12.57 16 20 C 0.02 0.29 8.79 60.06 0.53 0.82 16 21 C 0.04 0.72 8.86 60.07 0.53 1.26 16 22 C -0.21 -3.17 9.04 -39.43 -0.36 -3.52 16 23 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.06 1.19 7.65 -51.93 -0.40 0.80 16 32 H 0.06 1.18 5.74 -51.93 -0.30 0.88 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.85 5.40 -51.93 -0.28 0.57 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.08 1.90 6.99 -51.93 -0.36 1.54 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.01 0.21 6.40 -51.93 -0.33 -0.12 16 40 H 0.13 1.98 6.30 -52.49 -0.33 1.64 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -29.44 323.53 -7.52 -36.96 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.60 Total: -0.93 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.39 Total: -15.64 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.15 Total: -38.49 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.13 Total: -5.87 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.42 Total: 19.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.44 -7.52 -36.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057521028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.782 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds