Wall clock time and date at job start Mon Mar 30 2020 07:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46960 * 2 1 4 4 C 1.38273 * 119.94428 * 90.00674 * 3 2 1 5 5 C 1.38144 * 120.05653 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.94074 * 359.97438 * 5 4 3 7 7 O 1.35906 * 120.05223 * 180.02562 * 6 5 4 8 8 C 1.42897 * 116.99933 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47216 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46376 * 304.99770 * 9 8 7 11 11 C 1.50701 * 109.47211 * 185.00201 * 9 8 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 9 8 14 14 N 1.31523 * 119.99908 * 179.72112 * 13 11 9 15 15 Si 1.86800 * 120.00405 * 359.71709 * 13 11 9 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 N 1.46898 * 109.47472 * 64.99450 * 9 8 7 20 20 C 1.46900 * 111.00072 * 295.00639 * 19 9 8 21 21 C 1.46909 * 110.99662 * 58.95677 * 19 9 8 22 22 C 1.38733 * 119.89311 * 0.28528 * 6 5 4 23 23 C 1.38145 * 119.94172 * 359.46260 * 22 6 5 24 24 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47020 * 299.99884 * 1 2 3 26 26 H 1.08997 * 109.47474 * 59.99620 * 1 2 3 27 27 H 1.08998 * 109.46911 * 239.99575 * 2 1 3 28 28 H 1.09000 * 109.46754 * 120.00440 * 2 1 3 29 29 H 1.08004 * 119.97029 * 0.02562 * 4 3 2 30 30 H 1.07993 * 120.02624 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47481 * 60.00414 * 8 7 6 32 32 H 1.09000 * 109.47073 * 299.99884 * 8 7 6 33 33 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47450 * 63.95036 * 20 19 9 35 35 H 1.08998 * 109.46986 * 183.94953 * 20 19 9 36 36 H 1.08999 * 109.46807 * 303.95069 * 20 19 9 37 37 H 1.08995 * 109.47051 * 56.04377 * 21 19 9 38 38 H 1.08999 * 109.46999 * 176.04841 * 21 19 9 39 39 H 1.08996 * 109.47060 * 296.04611 * 21 19 9 40 40 H 1.07998 * 120.02508 * 179.71918 * 22 6 5 41 41 H 1.07992 * 119.97069 * 180.23434 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2625 2.0715 1.1982 5 6 2.7224 3.3741 1.2009 6 6 2.9538 4.0292 0.0001 7 8 3.4068 5.3105 0.0001 8 6 3.6224 5.9224 -1.2731 9 6 4.1287 7.3523 -1.0727 10 1 3.4299 7.8997 -0.4401 11 6 4.2390 8.0382 -2.4100 12 1 3.9748 7.5073 -3.3126 13 6 4.6830 9.3415 -2.4816 14 7 4.7845 9.9384 -3.6492 15 14 5.1404 10.2596 -0.9204 16 1 6.5801 10.0472 -0.6250 17 1 4.8818 11.7103 -1.1054 18 1 4.3229 9.7513 0.2103 19 7 5.4487 7.3187 -0.4291 20 6 5.3589 6.7632 0.9279 21 6 6.4123 6.5659 -1.2434 22 6 2.7170 3.3760 -1.2007 23 6 2.2620 2.0716 -1.1981 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.0825 1.5608 2.1327 30 1 2.9016 3.8820 2.1369 31 1 2.6854 5.9431 -1.8296 32 1 4.3636 5.3497 -1.8306 33 1 5.0966 10.8554 -3.6996 34 1 5.0346 5.7239 0.8744 35 1 6.3366 6.8145 1.4069 36 1 4.6388 7.3391 1.5092 37 1 6.4592 6.9980 -2.2429 38 1 7.3974 6.6158 -0.7793 39 1 6.0954 5.5253 -1.3119 40 1 2.8921 3.8854 -2.1367 41 1 2.0811 1.5614 -2.1325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057521028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:31 Heat of formation + Delta-G solvation = -28.190640 kcal Electronic energy + Delta-G solvation = -20127.882019 eV Core-core repulsion = 17200.411953 eV Total energy + Delta-G solvation = -2927.470066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27176 -39.48018 -37.78376 -34.53364 -34.36597 -32.08912 -31.34073 -29.53390 -28.28625 -27.23888 -24.81954 -24.41400 -23.64422 -21.78930 -21.04610 -19.44985 -18.45113 -17.69880 -17.02636 -16.46929 -16.39631 -15.65126 -15.52499 -15.32856 -15.01724 -14.69447 -14.63431 -14.24161 -14.17963 -13.81214 -13.40916 -13.30795 -13.10698 -12.79728 -12.65153 -12.38628 -12.35563 -12.24642 -12.04276 -11.83329 -11.72639 -11.58349 -11.45105 -11.28488 -10.77312 -9.94796 -9.04883 -8.88088 -8.28923 -6.41634 0.39674 0.48094 1.48542 1.54674 1.68050 2.28843 2.49416 2.80404 2.98669 3.55013 3.84786 3.92793 3.98651 4.08761 4.20665 4.33140 4.39126 4.44977 4.51304 4.57189 4.58215 4.60529 4.69068 4.74576 4.84122 4.95038 5.03807 5.08052 5.11636 5.15418 5.20435 5.29242 5.37786 5.43734 5.45302 5.50723 5.71929 5.90835 6.01625 6.34315 6.48169 6.54255 6.70819 7.33992 8.82864 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.004483 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.578081 B = 6244.048762 C = 6563.086386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.078 4.078 5 C -0.162 4.162 6 C 0.099 3.901 7 O -0.317 6.317 8 C 0.056 3.944 9 C 0.192 3.808 10 H 0.041 0.959 11 C -0.518 4.518 12 H 0.042 0.958 13 C 0.041 3.959 14 N -0.939 5.939 15 Si 0.983 3.017 16 H -0.274 1.274 17 H -0.317 1.317 18 H -0.263 1.263 19 N -0.559 5.559 20 C 0.020 3.980 21 C 0.042 3.958 22 C -0.221 4.221 23 C -0.084 4.084 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.117 0.883 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -19.094 10.476 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.127 4.127 4 C -0.096 4.096 5 C -0.181 4.181 6 C 0.054 3.946 7 O -0.231 6.231 8 C -0.020 4.020 9 C 0.085 3.915 10 H 0.059 0.941 11 C -0.556 4.556 12 H 0.061 0.939 13 C -0.159 4.159 14 N -0.577 5.577 15 Si 0.812 3.188 16 H -0.200 1.200 17 H -0.247 1.247 18 H -0.187 1.187 19 N -0.283 5.283 20 C -0.127 4.127 21 C -0.106 4.106 22 C -0.240 4.240 23 C -0.102 4.102 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.135 0.865 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.306 -18.343 10.587 21.612 hybrid contribution -0.007 0.244 -0.376 0.448 sum -4.313 -18.099 10.211 21.223 Atomic orbital electron populations 1.21757 0.94517 1.02332 1.01730 1.20499 0.96246 0.90859 1.03695 1.20118 1.02075 0.98038 0.92518 1.21135 0.96688 0.92849 0.98935 1.20656 1.05502 0.96033 0.95866 1.19550 0.95264 0.84671 0.95153 1.86250 1.79712 1.24758 1.32408 1.23404 0.99826 0.95459 0.83328 1.19687 0.87437 0.89924 0.94463 0.94147 1.20749 1.45674 0.97840 0.91327 0.93934 1.25606 0.93272 0.98061 0.98964 1.70038 1.47543 1.13696 1.26456 0.85100 0.79661 0.73858 0.80148 1.20011 1.24699 1.18737 1.62169 1.09901 1.52838 1.03402 1.22556 1.01162 0.99167 0.89833 1.22102 0.95214 0.94792 0.98488 1.21401 1.07850 0.97737 0.97036 1.21053 0.97045 0.93078 0.99015 0.90973 0.92834 0.93483 0.90536 0.89756 0.82872 0.84702 0.92959 0.92427 0.92392 0.93020 0.91454 0.92939 0.92694 0.91304 0.95959 0.86510 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 3 C -0.13 -2.66 5.13 -19.85 -0.10 -2.77 16 4 C -0.08 -1.66 9.69 22.26 0.22 -1.45 16 5 C -0.16 -4.31 9.99 22.36 0.22 -4.09 16 6 C 0.10 3.18 6.69 22.51 0.15 3.33 16 7 O -0.32 -11.70 6.74 -92.49 -0.62 -12.32 16 8 C 0.06 2.29 3.75 71.98 0.27 2.56 16 9 C 0.19 8.99 1.57 44.17 0.07 9.06 16 10 H 0.04 2.00 7.17 -2.38 -0.02 1.98 16 11 C -0.52 -28.74 7.80 25.60 0.20 -28.55 16 12 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 13 C 0.04 2.39 5.47 84.65 0.46 2.85 16 14 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 15 Si 0.98 48.81 26.02 68.60 1.79 50.60 16 16 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.32 -15.75 7.11 99.48 0.71 -15.04 16 18 H -0.26 -12.58 6.55 99.48 0.65 -11.93 16 19 N -0.56 -24.12 2.53 -927.70 -2.35 -26.47 16 20 C 0.02 0.73 8.79 127.69 1.12 1.86 16 21 C 0.04 1.68 8.86 127.69 1.13 2.81 16 22 C -0.22 -6.71 9.04 22.37 0.20 -6.51 16 23 C -0.08 -2.05 9.69 22.25 0.22 -1.83 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 28 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 29 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.05 2.16 7.65 -2.39 -0.02 2.14 16 32 H 0.06 2.33 5.74 -2.39 -0.01 2.31 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.05 1.83 5.40 -2.39 -0.01 1.81 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.90 8.11 -2.39 -0.02 1.88 16 37 H 0.05 2.50 6.99 -2.39 -0.02 2.49 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.02 0.83 6.40 -2.39 -0.02 0.81 16 40 H 0.12 3.71 6.30 -2.91 -0.02 3.69 16 41 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.08 323.53 5.10 -58.98 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.93 Total: 11.48 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.05 Total: -24.88 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.05 Total: -83.86 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.62 Total: -12.32 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.79 Total: 50.60 kcal Total: -64.08 5.10 -58.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057521028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.788 kcal (2) G-P(sol) polarization free energy of solvation -64.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds