Wall clock time and date at job start Mon Mar 30 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00281 * 2 1 4 4 C 1.50699 * 109.47459 * 179.97438 * 3 2 1 5 5 C 1.38159 * 120.02718 * 260.02474 * 4 3 2 6 6 C 1.38255 * 120.05377 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.94284 * 180.02562 * 6 5 4 8 8 C 1.38283 * 120.10890 * 0.02562 * 6 5 4 9 9 C 1.38119 * 120.05859 * 359.67988 * 8 6 5 10 10 C 1.38712 * 120.02718 * 79.99764 * 4 3 2 11 11 O 1.35903 * 120.05209 * 0.03294 * 10 4 3 12 12 C 1.42906 * 116.99515 * 179.97438 * 11 10 4 13 13 C 1.53006 * 109.46748 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00347 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99775 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00546 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00745 * 19 17 15 23 23 H 1.09008 * 109.47347 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47300 * 299.99791 * 1 2 3 25 25 H 1.09003 * 109.47211 * 59.99882 * 1 2 3 26 26 H 1.00901 * 110.99943 * 123.96008 * 2 1 3 27 27 H 1.09001 * 109.46706 * 60.00025 * 3 2 1 28 28 H 1.08998 * 109.47269 * 300.00546 * 3 2 1 29 29 H 1.07997 * 119.97551 * 359.95674 * 5 4 3 30 30 H 1.08997 * 109.47029 * 90.00198 * 7 6 5 31 31 H 1.08999 * 109.47391 * 210.00218 * 7 6 5 32 32 H 1.09004 * 109.47368 * 329.99942 * 7 6 5 33 33 H 1.08002 * 119.97218 * 179.97438 * 8 6 5 34 34 H 1.08001 * 120.03418 * 180.31411 * 9 8 6 35 35 H 1.09000 * 109.47490 * 59.99635 * 12 11 10 36 36 H 1.09001 * 109.47232 * 299.98989 * 12 11 10 37 37 H 1.08993 * 109.46955 * 299.99993 * 13 12 11 38 38 H 1.09000 * 109.47050 * 59.99822 * 13 12 11 39 39 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 40 40 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 41 41 H 0.96991 * 119.99882 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1981 1.5201 1.1790 6 6 5.5801 1.4828 1.1803 7 6 6.3369 1.6886 2.4671 8 6 6.2691 1.2570 0.0028 9 6 5.5776 1.0616 -1.1768 10 6 4.1907 1.1040 -1.1817 11 8 3.5081 0.9180 -2.3421 12 6 4.2829 0.6897 -3.5210 13 6 3.3478 0.5035 -4.7176 14 6 4.1773 0.2596 -5.9799 15 6 3.2563 0.0768 -7.1587 16 1 2.1864 0.1297 -7.0213 17 6 3.7795 -0.1580 -8.4125 18 7 2.9758 -0.3170 -9.4413 19 14 5.6301 -0.2488 -8.6502 20 1 6.0840 -1.6513 -8.4704 21 1 5.9766 0.2120 -10.0188 22 1 6.3009 0.6205 -7.6505 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.8306 -0.5262 0.7813 27 1 1.6460 1.8947 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.6623 1.6973 2.0998 30 1 6.4919 0.7264 2.9552 31 1 7.3023 2.1464 2.2516 32 1 5.7639 2.3418 3.1252 33 1 7.3487 1.2287 0.0062 34 1 6.1160 0.8802 -2.0953 35 1 4.8880 -0.2075 -3.3901 36 1 4.9349 1.5450 -3.6987 37 1 2.6961 -0.3519 -4.5397 38 1 2.7424 1.4004 -4.8487 39 1 4.8287 1.1152 -6.1576 40 1 4.7829 -0.6372 -5.8490 41 1 3.3440 -0.4818 -10.3233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071403511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:22 Heat of formation + Delta-G solvation = -32.883951 kcal Electronic energy + Delta-G solvation = -19257.261843 eV Core-core repulsion = 16329.588260 eV Total energy + Delta-G solvation = -2927.673583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21547 -37.71297 -36.09712 -34.12516 -32.31927 -31.54201 -31.35838 -27.70268 -26.98383 -25.93440 -23.82253 -23.35914 -21.54648 -20.65592 -20.03863 -17.82745 -16.82303 -16.25395 -15.83930 -15.72644 -14.90814 -14.61330 -14.39195 -14.12561 -13.89241 -13.78465 -13.32875 -13.27008 -12.71085 -12.66204 -12.43594 -12.02567 -11.99998 -11.81133 -11.67286 -11.35773 -11.11627 -11.03938 -10.53472 -10.49212 -10.03201 -9.79743 -9.70690 -9.21965 -8.95686 -8.55155 -8.44927 -7.89130 -6.05072 -4.03675 1.26816 1.45470 3.29896 3.37196 3.39856 3.52861 3.65455 4.35883 4.43867 4.69217 4.73217 4.86579 5.12642 5.15145 5.22978 5.28144 5.32581 5.40918 5.44645 5.48271 5.49540 5.58102 5.62123 5.67782 5.80820 5.85853 5.89047 6.05716 6.29779 6.42080 6.45668 6.49545 6.54693 6.81715 6.85749 6.91387 7.24914 7.31928 7.36592 7.67208 7.78928 8.52854 9.00100 9.56484 11.08348 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.004089 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.988955 B = 6845.793728 C = 8069.563437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.683 5.683 3 C 0.112 3.888 4 C -0.126 4.126 5 C -0.077 4.077 6 C -0.139 4.139 7 C -0.105 4.105 8 C -0.077 4.077 9 C -0.211 4.211 10 C 0.160 3.840 11 O -0.299 6.299 12 C 0.056 3.944 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.520 4.520 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.067 0.933 24 H 0.017 0.983 25 H 0.067 0.933 26 H 0.338 0.662 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.013 0.987 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 3.672 24.473 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.313 5.313 3 C -0.017 4.017 4 C -0.127 4.127 5 C -0.095 4.095 6 C -0.139 4.139 7 C -0.162 4.162 8 C -0.095 4.095 9 C -0.230 4.230 10 C 0.113 3.887 11 O -0.211 6.211 12 C -0.019 4.019 13 C -0.136 4.136 14 C -0.047 4.047 15 C -0.558 4.558 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.086 0.914 24 H 0.035 0.965 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.453 3.572 23.527 24.046 hybrid contribution 1.065 0.126 0.481 1.175 sum 4.518 3.698 24.008 24.707 Atomic orbital electron populations 1.22189 0.87659 1.01884 1.00273 1.60328 1.07472 1.13736 1.49794 1.20665 0.90025 0.90007 1.00982 1.19069 0.95316 1.07204 0.91084 1.20685 0.93396 0.99043 0.96421 1.19683 0.93642 1.05052 0.95521 1.20664 0.99571 1.01592 0.94347 1.20801 0.99447 0.97643 0.91597 1.21345 0.93342 1.08534 0.99799 1.18870 0.90064 0.93159 0.86650 1.86196 1.35912 1.84754 1.14277 1.23185 0.95376 0.99911 0.83380 1.21482 0.98091 1.02494 0.91556 1.19514 0.96120 0.96281 0.92815 1.21080 0.94774 1.49055 0.90906 0.90820 1.25023 0.97898 0.94608 0.95941 1.69909 1.34876 1.49463 0.99875 0.86777 0.86271 0.78777 0.77453 1.20224 1.21312 1.19062 0.91434 0.96493 0.91390 0.84529 0.94978 0.89707 0.86075 0.91733 0.91919 0.92002 0.86127 0.85229 0.92506 0.92651 0.91505 0.91738 0.96460 0.96840 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 60.06 0.64 0.94 16 2 N -0.68 -8.28 6.84 -122.42 -0.84 -9.12 16 3 C 0.11 1.36 5.48 -4.98 -0.03 1.33 16 4 C -0.13 -1.64 5.41 -104.48 -0.56 -2.21 16 5 C -0.08 -0.84 9.32 -39.60 -0.37 -1.21 16 6 C -0.14 -1.48 5.88 -104.60 -0.62 -2.10 16 7 C -0.10 -0.81 10.01 36.00 0.36 -0.45 16 8 C -0.08 -0.89 9.69 -39.61 -0.38 -1.27 16 9 C -0.21 -2.88 9.04 -39.44 -0.36 -3.23 16 10 C 0.16 2.41 6.66 -39.22 -0.26 2.15 16 11 O -0.30 -5.12 9.37 -19.43 -0.18 -5.31 16 12 C 0.06 0.97 4.74 37.16 0.18 1.14 16 13 C -0.10 -2.02 5.52 -26.73 -0.15 -2.17 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 15 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 19 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.34 3.60 8.81 -39.29 -0.35 3.25 16 27 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 28 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 29 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.69 6.30 -52.49 -0.33 1.36 16 35 H 0.06 0.93 7.65 -51.93 -0.40 0.53 16 36 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 40 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -31.51 338.48 -8.77 -40.28 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.87 Total: 0.15 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.09 Total: -20.89 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.06 Total: -36.37 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.18 Total: -5.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.51 -8.77 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071403511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.398 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds