Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38322 * 119.93134 * 2 1 4 4 C 1.38080 * 120.07067 * 179.97438 * 3 2 1 5 5 C 1.38895 * 119.93098 * 359.97438 * 4 3 2 6 6 O 1.35748 * 120.07031 * 179.97438 * 5 4 3 7 7 C 1.34832 * 116.99976 * 354.40190 * 6 5 4 8 8 H 1.08000 * 119.99949 * 5.06165 * 7 6 5 9 9 C 1.38660 * 120.00002 * 185.06240 * 7 6 5 10 10 N 1.31555 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 119.99823 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47407 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46972 * 120.00176 * 11 9 7 14 14 H 1.48510 * 109.47241 * 240.00077 * 11 9 7 15 15 C 1.38855 * 119.86240 * 0.02562 * 5 4 3 16 16 C 1.50697 * 120.03722 * 180.02562 * 15 5 4 17 17 N 1.46904 * 109.47429 * 79.99543 * 16 15 5 18 18 C 1.46898 * 111.00156 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46891 * 60.00077 * 18 17 16 20 20 C 1.52992 * 109.47258 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47077 * 300.00395 * 18 17 16 22 22 C 1.38125 * 119.93169 * 0.27084 * 15 5 4 23 23 H 1.08995 * 109.46967 * 90.00236 * 1 2 3 24 24 H 1.08996 * 109.47095 * 210.00472 * 1 2 3 25 25 H 1.09003 * 109.47367 * 330.00414 * 1 2 3 26 26 H 1.08000 * 119.96552 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.03375 * 179.97438 * 4 3 2 28 28 H 0.96999 * 119.99938 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.47217 * 319.99836 * 16 15 5 30 30 H 1.09006 * 109.47536 * 199.99850 * 16 15 5 31 31 H 1.00898 * 110.99362 * 56.05162 * 17 16 15 32 32 H 1.08999 * 109.47206 * 60.00245 * 19 18 17 33 33 H 1.09001 * 109.46974 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.47307 * 299.99603 * 19 18 17 35 35 H 1.09001 * 109.47225 * 60.00021 * 20 18 17 36 36 H 1.08997 * 109.47293 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.47179 * 299.99963 * 20 18 17 38 38 H 1.08997 * 109.47635 * 60.00082 * 21 18 17 39 39 H 1.09005 * 109.46734 * 180.02562 * 21 18 17 40 40 H 1.09001 * 109.46883 * 299.99659 * 21 18 17 41 41 H 1.08001 * 119.97021 * 179.72260 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2739 0.0001 0.0016 6 8 5.6314 0.0001 0.0016 7 6 6.2435 1.1956 -0.1166 8 1 5.6585 2.1034 -0.1235 9 6 7.6240 1.2595 -0.2294 10 7 8.3365 0.1536 -0.2216 11 14 8.4719 2.9157 -0.3940 12 1 7.4541 3.9969 -0.3767 13 1 9.4133 3.1046 0.7389 14 1 9.2227 2.9625 -1.6745 15 6 3.5782 -1.2016 0.0016 16 6 4.3293 -2.5081 0.0034 17 7 4.7804 -2.8118 1.3680 18 6 5.5187 -4.0812 1.4082 19 6 6.7435 -3.9878 0.4960 20 6 5.9706 -4.3632 2.8424 21 6 4.6104 -5.2149 0.9279 22 6 2.1970 -1.1984 -0.0051 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6555 2.1331 -0.0004 27 1 4.1162 2.1384 0.0001 28 1 9.3023 0.1984 -0.3001 29 1 5.1937 -2.4312 -0.6563 30 1 3.6736 -3.3047 -0.3483 31 1 4.0031 -2.8248 2.0112 32 1 7.3906 -3.1802 0.8381 33 1 7.2911 -4.9298 0.5254 34 1 6.4212 -3.7872 -0.5257 35 1 5.0978 -4.4298 3.4919 36 1 6.5188 -5.3048 2.8721 37 1 6.6176 -3.5556 3.1849 38 1 4.2881 -5.0142 -0.0938 39 1 5.1581 -6.1568 0.9582 40 1 3.7378 -5.2813 1.5778 41 1 1.6553 -2.1327 -0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071407159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = -15.017421 kcal Electronic energy + Delta-G solvation = -20348.885683 eV Core-core repulsion = 17421.986851 eV Total energy + Delta-G solvation = -2926.898832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.23922 -37.68982 -36.53758 -32.86118 -32.09526 -30.65983 -29.25894 -27.11414 -26.92864 -26.07973 -24.82014 -24.18795 -21.32750 -19.75046 -18.76029 -17.85938 -16.75437 -15.33672 -15.04767 -14.65564 -14.48940 -14.02211 -13.60941 -13.55244 -13.43228 -13.21284 -12.89680 -12.60106 -12.54267 -12.13852 -11.85047 -11.74930 -11.55891 -11.35121 -11.33762 -11.10638 -11.06230 -10.64926 -10.54598 -10.49471 -10.36553 -10.32931 -10.16068 -9.20442 -8.73138 -8.04449 -7.69369 -6.99147 -6.36475 -3.92877 2.21049 2.42785 3.16306 3.18071 3.22868 4.02847 4.47128 4.84807 5.17720 5.21361 5.28374 5.35814 5.51227 5.54595 5.57839 5.70736 5.78438 5.85294 5.93672 5.98346 6.01471 6.03249 6.12348 6.19527 6.21462 6.28463 6.33907 6.36483 6.46911 6.59799 6.68579 6.80545 6.96570 7.03542 7.19047 7.29089 7.46718 7.49649 7.72706 7.92523 8.04861 8.07945 9.09256 9.82941 10.80637 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.008540 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.175661 B = 3278.062949 C = 5394.276663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.192 4.192 3 C -0.070 4.070 4 C -0.237 4.237 5 C 0.171 3.829 6 O -0.157 6.157 7 C -0.391 4.391 8 H 0.089 0.911 9 C 0.042 3.958 10 N -0.854 5.854 11 Si 0.935 3.065 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.161 4.161 16 C 0.119 3.881 17 N -0.660 5.660 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.180 4.180 22 C -0.068 4.068 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.267 0.733 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.331 0.669 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 -5.838 1.779 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.193 4.193 3 C -0.088 4.088 4 C -0.256 4.256 5 C 0.116 3.884 6 O -0.059 6.059 7 C -0.468 4.468 8 H 0.106 0.894 9 C -0.163 4.163 10 N -0.489 5.489 11 Si 0.761 3.239 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.163 4.163 16 C -0.009 4.009 17 N -0.290 5.290 18 C 0.015 3.985 19 C -0.193 4.193 20 C -0.193 4.193 21 C -0.239 4.239 22 C -0.087 4.087 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.148 0.852 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.835 -5.703 1.732 9.069 hybrid contribution -0.381 0.359 -0.191 0.558 sum -7.216 -5.344 1.541 9.111 Atomic orbital electron populations 1.20490 0.92654 1.01094 1.00614 1.19290 0.94756 0.93201 1.12021 1.20604 0.93601 0.96415 0.98184 1.21161 0.94186 0.98450 1.11811 1.19093 0.85087 0.92341 0.91845 1.84046 1.12352 1.32142 1.77337 1.21363 0.90222 0.83389 1.51821 0.89396 1.25202 0.95421 0.98903 0.96733 1.70058 1.06446 1.26613 1.45796 0.85732 0.79412 0.80623 0.78155 1.19250 1.20263 1.20301 1.18842 0.92376 0.92967 1.12110 1.20588 0.97678 0.91881 0.90749 1.60578 1.29247 1.31573 1.07628 1.20912 0.94237 0.87562 0.95748 1.21824 0.96948 1.01346 0.99208 1.21788 1.01003 1.01324 0.95193 1.22590 1.00081 0.99718 1.01556 1.20401 0.92455 0.96521 0.99364 0.92987 0.92978 0.92903 0.87801 0.85683 0.92348 0.89722 0.95947 0.85185 0.90558 0.93593 0.92702 0.93367 0.92815 0.91551 0.92440 0.92677 0.93235 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.01 36.00 0.36 -0.90 16 2 C -0.19 -3.40 5.88 -104.58 -0.62 -4.02 16 3 C -0.07 -1.32 9.69 -39.61 -0.38 -1.71 16 4 C -0.24 -5.27 9.17 -39.40 -0.36 -5.63 16 5 C 0.17 4.15 6.62 -39.11 -0.26 3.89 16 6 O -0.16 -4.38 9.00 0.05 0.00 -4.38 16 7 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 C 0.04 1.15 5.49 -17.51 -0.10 1.05 16 10 N -0.85 -24.65 13.67 55.48 0.76 -23.89 16 11 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 C -0.16 -3.38 5.41 -104.44 -0.56 -3.94 16 16 C 0.12 2.29 4.70 -4.98 -0.02 2.27 16 17 N -0.66 -12.10 6.08 -101.22 -0.62 -12.72 16 18 C 0.11 1.68 0.97 -131.61 -0.13 1.55 16 19 C -0.14 -2.35 8.24 37.16 0.31 -2.05 16 20 C -0.14 -1.92 8.73 37.15 0.32 -1.59 16 21 C -0.18 -2.40 8.23 37.16 0.31 -2.09 16 22 C -0.07 -1.25 9.32 -39.61 -0.37 -1.62 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.08 1.87 6.02 -51.93 -0.31 1.56 16 30 H 0.02 0.38 6.16 -51.93 -0.32 0.06 16 31 H 0.33 5.64 8.71 -39.29 -0.34 5.29 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 1.00 6.40 -51.93 -0.33 0.66 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -29.35 331.81 -7.50 -36.85 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.41 Total: 8.89 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -1.21 Total: -25.41 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.14 Total: -36.61 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.00 Total: -4.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.35 -7.50 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071407159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.828 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds