Wall clock time and date at job start Mon Mar 30 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38322 * 119.93134 * 2 1 4 4 C 1.38080 * 120.07067 * 179.97438 * 3 2 1 5 5 C 1.38895 * 119.93098 * 359.97438 * 4 3 2 6 6 O 1.35748 * 120.07031 * 179.97438 * 5 4 3 7 7 C 1.34832 * 116.99976 * 354.40190 * 6 5 4 8 8 H 1.08000 * 119.99949 * 5.06165 * 7 6 5 9 9 C 1.38660 * 120.00002 * 185.06240 * 7 6 5 10 10 N 1.31555 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 119.99823 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47407 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46972 * 120.00176 * 11 9 7 14 14 H 1.48510 * 109.47241 * 240.00077 * 11 9 7 15 15 C 1.38855 * 119.86240 * 0.02562 * 5 4 3 16 16 C 1.50697 * 120.03722 * 180.02562 * 15 5 4 17 17 N 1.46904 * 109.47429 * 79.99543 * 16 15 5 18 18 C 1.46898 * 111.00156 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46891 * 60.00077 * 18 17 16 20 20 C 1.52992 * 109.47258 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47077 * 300.00395 * 18 17 16 22 22 C 1.38125 * 119.93169 * 0.27084 * 15 5 4 23 23 H 1.08995 * 109.46967 * 90.00236 * 1 2 3 24 24 H 1.08996 * 109.47095 * 210.00472 * 1 2 3 25 25 H 1.09003 * 109.47367 * 330.00414 * 1 2 3 26 26 H 1.08000 * 119.96552 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.03375 * 179.97438 * 4 3 2 28 28 H 0.96999 * 119.99938 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.47217 * 319.99836 * 16 15 5 30 30 H 1.09006 * 109.47536 * 199.99850 * 16 15 5 31 31 H 1.00898 * 110.99362 * 56.05162 * 17 16 15 32 32 H 1.08999 * 109.47206 * 60.00245 * 19 18 17 33 33 H 1.09001 * 109.46974 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.47307 * 299.99603 * 19 18 17 35 35 H 1.09001 * 109.47225 * 60.00021 * 20 18 17 36 36 H 1.08997 * 109.47293 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.47179 * 299.99963 * 20 18 17 38 38 H 1.08997 * 109.47635 * 60.00082 * 21 18 17 39 39 H 1.09005 * 109.46734 * 180.02562 * 21 18 17 40 40 H 1.09001 * 109.46883 * 299.99659 * 21 18 17 41 41 H 1.08001 * 119.97021 * 179.72260 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2739 0.0001 0.0016 6 8 5.6314 0.0001 0.0016 7 6 6.2435 1.1956 -0.1166 8 1 5.6585 2.1034 -0.1235 9 6 7.6240 1.2595 -0.2294 10 7 8.3365 0.1536 -0.2216 11 14 8.4719 2.9157 -0.3940 12 1 7.4541 3.9969 -0.3767 13 1 9.4133 3.1046 0.7389 14 1 9.2227 2.9625 -1.6745 15 6 3.5782 -1.2016 0.0016 16 6 4.3293 -2.5081 0.0034 17 7 4.7804 -2.8118 1.3680 18 6 5.5187 -4.0812 1.4082 19 6 6.7435 -3.9878 0.4960 20 6 5.9706 -4.3632 2.8424 21 6 4.6104 -5.2149 0.9279 22 6 2.1970 -1.1984 -0.0051 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6555 2.1331 -0.0004 27 1 4.1162 2.1384 0.0001 28 1 9.3023 0.1984 -0.3001 29 1 5.1937 -2.4312 -0.6563 30 1 3.6736 -3.3047 -0.3483 31 1 4.0031 -2.8248 2.0112 32 1 7.3906 -3.1802 0.8381 33 1 7.2911 -4.9298 0.5254 34 1 6.4212 -3.7872 -0.5257 35 1 5.0978 -4.4298 3.4919 36 1 6.5188 -5.3048 2.8721 37 1 6.6176 -3.5556 3.1849 38 1 4.2881 -5.0142 -0.0938 39 1 5.1581 -6.1568 0.9582 40 1 3.7378 -5.2813 1.5778 41 1 1.6553 -2.1327 -0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071407159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:19 Heat of formation + Delta-G solvation = -33.244403 kcal Electronic energy + Delta-G solvation = -20349.676064 eV Core-core repulsion = 17421.986851 eV Total energy + Delta-G solvation = -2927.689214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91005 -39.09882 -38.23828 -34.49391 -33.91541 -32.18864 -30.75050 -28.38427 -28.13984 -27.78400 -26.49880 -25.72017 -23.02048 -21.29402 -20.09495 -19.71569 -18.60507 -16.78896 -16.63543 -16.30152 -16.06000 -15.51481 -15.31822 -15.05569 -14.94194 -14.51910 -14.24798 -14.16453 -13.91149 -13.59306 -13.55711 -12.94687 -12.89067 -12.86419 -12.68520 -12.65758 -12.39081 -12.18664 -12.11545 -12.05944 -11.88750 -11.78638 -11.54802 -11.02731 -10.70323 -9.62726 -9.07849 -8.70446 -8.38464 -6.03464 0.59848 0.80851 1.34673 1.42563 1.51471 2.20235 2.84344 3.16137 3.50874 3.63784 3.95491 4.02808 4.06256 4.15191 4.25744 4.32631 4.44147 4.60694 4.63271 4.71906 4.75939 4.80212 4.87126 4.92353 4.98778 5.00792 5.03582 5.05541 5.08813 5.21349 5.22542 5.31072 5.43032 5.46787 5.51812 5.68062 5.81663 5.89394 6.09294 6.30344 6.36939 6.71298 7.05864 7.92116 8.83103 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.008540 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.175661 B = 3278.062949 C = 5394.276663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.170 4.170 3 C -0.075 4.075 4 C -0.253 4.253 5 C 0.129 3.871 6 O -0.204 6.204 7 C -0.413 4.413 8 H 0.092 0.908 9 C -0.017 4.017 10 N -0.907 5.907 11 Si 1.010 2.990 12 H -0.256 1.256 13 H -0.270 1.270 14 H -0.270 1.270 15 C -0.167 4.167 16 C 0.131 3.869 17 N -0.682 5.682 18 C 0.103 3.897 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.169 4.169 22 C -0.068 4.068 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.268 0.732 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.339 0.661 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 -6.542 2.187 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.171 4.171 3 C -0.093 4.093 4 C -0.272 4.272 5 C 0.077 3.923 6 O -0.109 6.109 7 C -0.490 4.490 8 H 0.110 0.890 9 C -0.216 4.216 10 N -0.545 5.545 11 Si 0.830 3.170 12 H -0.180 1.180 13 H -0.196 1.196 14 H -0.195 1.195 15 C -0.168 4.168 16 C 0.003 3.997 17 N -0.314 5.314 18 C 0.013 3.987 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.228 4.228 22 C -0.086 4.086 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.130 0.870 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.158 0.842 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.199 -6.411 2.146 12.236 hybrid contribution 0.328 0.497 -0.312 0.673 sum -9.870 -5.914 1.834 11.652 Atomic orbital electron populations 1.20588 0.88815 1.03042 1.02324 1.19927 0.97444 0.92215 1.07531 1.20969 0.92218 0.98678 0.97483 1.21274 0.95896 0.97384 1.12669 1.19694 0.84405 0.94436 0.93725 1.84028 1.14317 1.32151 1.80396 1.21775 0.91012 0.83975 1.52231 0.89032 1.26380 0.95811 1.03085 0.96281 1.70214 1.06661 1.29197 1.48430 0.84653 0.78215 0.75730 0.78385 1.17955 1.19563 1.19464 1.19259 0.93819 0.92588 1.11170 1.20373 0.96380 0.92140 0.90840 1.60455 1.29882 1.33799 1.07261 1.21006 0.93640 0.87673 0.96422 1.21758 0.97532 1.00861 0.98526 1.21746 1.01456 1.01361 0.94180 1.22447 1.00110 0.98991 1.01288 1.20830 0.91207 0.98586 0.98015 0.91216 0.90874 0.91299 0.84732 0.87050 0.92303 0.93826 0.93062 0.84230 0.95284 0.90768 0.94421 0.91557 0.90494 0.94344 0.93068 0.90777 0.91516 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 10.01 71.23 0.71 -1.28 16 2 C -0.17 -5.43 5.88 -19.83 -0.12 -5.54 16 3 C -0.08 -2.72 9.69 22.25 0.22 -2.50 16 4 C -0.25 -11.53 9.17 22.39 0.21 -11.32 16 5 C 0.13 6.53 6.62 22.58 0.15 6.68 16 6 O -0.20 -12.27 9.00 -22.73 -0.20 -12.47 16 7 C -0.41 -24.62 9.49 67.92 0.64 -23.97 16 8 H 0.09 5.13 5.20 -2.91 -0.02 5.11 16 9 C -0.02 -1.00 5.49 84.84 0.47 -0.53 16 10 N -0.91 -56.14 13.67 21.61 0.30 -55.85 16 11 Si 1.01 44.31 29.55 68.60 2.03 46.34 16 12 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 15 C -0.17 -7.02 5.41 -19.74 -0.11 -7.13 16 16 C 0.13 5.15 4.70 85.56 0.40 5.55 16 17 N -0.68 -25.45 6.08 -474.15 -2.88 -28.33 16 18 C 0.10 3.23 0.97 3.53 0.00 3.23 16 19 C -0.13 -4.72 8.24 71.98 0.59 -4.13 16 20 C -0.13 -3.57 8.73 71.98 0.63 -2.94 16 21 C -0.17 -4.06 8.23 71.98 0.59 -3.47 16 22 C -0.07 -2.29 9.32 22.25 0.21 -2.08 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.35 8.09 -2.39 -0.02 1.34 16 25 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 26 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.04 2.07 6.02 -2.38 -0.01 2.06 16 30 H 0.05 1.68 6.16 -2.38 -0.01 1.66 16 31 H 0.34 11.30 8.71 -89.70 -0.78 10.52 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.46 6.40 -2.39 -0.02 1.45 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.29 6.40 -2.39 -0.02 1.27 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.14 3.76 8.03 -2.91 -0.02 3.74 16 Total: -1.00 -70.64 331.81 4.07 -66.57 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.24 Total: 33.18 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 4.60 Total: -49.44 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.59 Total: -84.18 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.20 Total: -12.47 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.64 4.07 -66.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071407159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.323 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds