Wall clock time and date at job start Mon Mar 30 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38320 * 119.92787 * 2 1 4 4 C 1.38083 * 120.06500 * 180.02562 * 3 2 1 5 5 C 1.38902 * 119.93025 * 359.97438 * 4 3 2 6 6 O 1.35756 * 120.06557 * 179.97438 * 5 4 3 7 7 C 1.34826 * 117.00170 * 354.39704 * 6 5 4 8 8 H 1.08005 * 119.99737 * 5.06825 * 7 6 5 9 9 C 1.38649 * 120.00042 * 185.06351 * 7 6 5 10 10 N 1.31555 * 120.00004 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99991 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47112 * 60.00322 * 11 9 7 13 13 H 1.48504 * 109.46934 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.46936 * 299.99968 * 11 9 7 15 15 C 1.38861 * 119.86233 * 359.97438 * 5 4 3 16 16 C 1.50698 * 120.03260 * 180.02562 * 15 5 4 17 17 N 1.46896 * 109.47115 * 80.00092 * 16 15 5 18 18 C 1.46898 * 111.00162 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47323 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47027 * 65.00203 * 19 18 17 21 21 C 1.53006 * 109.47345 * 185.00019 * 19 18 17 22 22 C 1.38117 * 119.92981 * 0.28255 * 15 5 4 23 23 H 1.08998 * 109.46994 * 89.99962 * 1 2 3 24 24 H 1.09001 * 109.47154 * 209.99862 * 1 2 3 25 25 H 1.08999 * 109.46647 * 329.99629 * 1 2 3 26 26 H 1.07999 * 119.97218 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.03252 * 179.97438 * 4 3 2 28 28 H 0.97000 * 119.99796 * 179.97438 * 10 9 7 29 29 H 1.09005 * 109.47342 * 320.00307 * 16 15 5 30 30 H 1.09000 * 109.47260 * 200.00580 * 16 15 5 31 31 H 1.00896 * 110.99999 * 56.04721 * 17 16 15 32 32 H 1.09004 * 109.47269 * 300.00741 * 18 17 16 33 33 H 1.09006 * 109.47160 * 60.00018 * 18 17 16 34 34 H 1.09000 * 109.47093 * 305.00183 * 19 18 17 35 35 H 1.09001 * 109.46949 * 299.99725 * 20 19 18 36 36 H 1.09000 * 109.47200 * 60.00046 * 20 19 18 37 37 H 1.09008 * 109.47086 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46813 * 60.00054 * 21 19 18 39 39 H 1.08998 * 109.47136 * 179.97438 * 21 19 18 40 40 H 1.09003 * 109.46907 * 300.00579 * 21 19 18 41 41 H 1.08000 * 119.96126 * 179.72517 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1988 0.0000 4 6 3.5780 1.2021 -0.0005 5 6 4.2739 0.0000 -0.0005 6 8 5.6315 0.0000 -0.0016 7 6 6.2435 1.1955 -0.1199 8 1 5.6585 2.1034 -0.1259 9 6 7.6238 1.2595 -0.2337 10 7 8.3363 0.1536 -0.2268 11 14 8.4718 2.9159 -0.3969 12 1 8.1716 3.7455 0.7976 13 1 9.9390 2.7126 -0.5029 14 1 7.9789 3.6063 -1.6157 15 6 3.5782 -1.2018 0.0005 16 6 4.3293 -2.5082 0.0011 17 7 4.7824 -2.8119 1.3651 18 6 5.5197 -4.0818 1.4044 19 6 5.9738 -4.3638 2.8379 20 6 4.7481 -4.5797 3.7279 21 6 6.8468 -5.6202 2.8587 22 6 2.1970 -1.1984 -0.0043 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5139 26 1 1.6556 2.1331 -0.0004 27 1 4.1163 2.1383 -0.0010 28 1 9.3020 0.1983 -0.3069 29 1 5.1927 -2.4313 -0.6598 30 1 3.6731 -3.3048 -0.3497 31 1 4.0061 -2.8248 2.0095 32 1 4.8714 -4.8891 1.0635 33 1 6.3913 -4.0162 0.7531 34 1 6.5484 -3.5158 3.2105 35 1 4.1262 -3.6847 3.7132 36 1 4.1734 -5.4277 3.3554 37 1 5.0716 -4.7802 4.7494 38 1 7.7199 -5.4663 2.2246 39 1 7.1706 -5.8208 3.8799 40 1 6.2721 -6.4681 2.4861 41 1 1.6554 -2.1327 -0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071407335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:23 Heat of formation + Delta-G solvation = -23.256022 kcal Electronic energy + Delta-G solvation = -19865.697756 eV Core-core repulsion = 16938.441671 eV Total energy + Delta-G solvation = -2927.256085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.17986 -37.06111 -36.53167 -33.86577 -32.28692 -30.85172 -30.24603 -27.05924 -26.24208 -25.76984 -24.66866 -23.15681 -21.31165 -19.98494 -19.51518 -17.86791 -16.76754 -15.71889 -14.95056 -14.66115 -14.50492 -14.31623 -13.75864 -13.59053 -13.45310 -13.38270 -12.89868 -12.63311 -12.51779 -12.42336 -12.10063 -11.95833 -11.68544 -11.57029 -11.25451 -11.09095 -10.88174 -10.62869 -10.53645 -10.47300 -10.40494 -10.33665 -10.23981 -9.21855 -8.72996 -8.06943 -7.73319 -7.00439 -6.36441 -3.93486 2.19823 2.42060 3.17475 3.18268 3.20586 4.02777 4.47217 4.86286 5.13057 5.15481 5.20290 5.33333 5.33960 5.52566 5.55009 5.70443 5.72146 5.79062 5.85148 5.91922 5.94353 5.97854 6.01155 6.04171 6.12179 6.16249 6.23680 6.31730 6.44333 6.50637 6.51795 6.62256 6.79558 7.01220 7.17458 7.27651 7.45556 7.47650 7.66599 7.91314 8.00769 8.07436 9.08739 9.82127 10.80614 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.007728 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.473683 B = 3622.454025 C = 5952.692837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.192 4.192 3 C -0.069 4.069 4 C -0.236 4.236 5 C 0.171 3.829 6 O -0.157 6.157 7 C -0.392 4.392 8 H 0.088 0.912 9 C 0.042 3.958 10 N -0.856 5.856 11 Si 0.936 3.064 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.271 1.271 15 C -0.162 4.162 16 C 0.124 3.876 17 N -0.672 5.672 18 C 0.068 3.932 19 C -0.097 4.097 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.068 4.068 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.268 0.732 29 H 0.081 0.919 30 H 0.019 0.981 31 H 0.331 0.669 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -6.106 3.200 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.193 4.193 3 C -0.087 4.087 4 C -0.256 4.256 5 C 0.116 3.884 6 O -0.059 6.059 7 C -0.469 4.469 8 H 0.106 0.894 9 C -0.163 4.163 10 N -0.491 5.491 11 Si 0.761 3.239 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.196 1.196 15 C -0.164 4.164 16 C -0.005 4.005 17 N -0.303 5.303 18 C -0.061 4.061 19 C -0.116 4.116 20 C -0.205 4.205 21 C -0.202 4.202 22 C -0.087 4.087 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.037 0.963 31 H 0.150 0.850 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.933 -5.984 3.143 9.682 hybrid contribution -0.318 0.379 -0.188 0.530 sum -7.252 -5.604 2.954 9.629 Atomic orbital electron populations 1.20494 0.92622 1.01110 1.00635 1.19290 0.94774 0.93179 1.12029 1.20609 0.93589 0.96434 0.98103 1.21157 0.94185 0.98418 1.11799 1.19099 0.85073 0.92365 0.91852 1.84046 1.12387 1.32171 1.77298 1.21271 0.90223 0.83342 1.52054 0.89441 1.25218 0.95422 0.98955 0.96675 1.70047 1.06623 1.26797 1.45585 0.85858 0.78343 0.80565 0.79101 1.19598 1.20366 1.19641 1.18801 0.92383 0.92858 1.12342 1.20479 0.97559 0.92083 0.90331 1.60406 1.29633 1.32603 1.07656 1.21960 0.98135 0.89591 0.96462 1.21126 0.96641 0.98429 0.95416 1.21854 0.98054 1.01268 0.99279 1.21790 0.99689 0.97282 1.01411 1.20400 0.92415 0.96570 0.99303 0.92965 0.92964 0.92885 0.87751 0.85653 0.92193 0.90078 0.96290 0.85036 0.96434 0.90874 0.89958 0.92350 0.93364 0.92974 0.92500 0.92894 0.93192 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.01 36.01 0.36 -0.89 16 2 C -0.19 -3.40 5.88 -104.57 -0.62 -4.02 16 3 C -0.07 -1.31 9.69 -39.61 -0.38 -1.69 16 4 C -0.24 -5.26 9.17 -39.39 -0.36 -5.62 16 5 C 0.17 4.17 6.62 -39.11 -0.26 3.91 16 6 O -0.16 -4.44 9.00 0.04 0.00 -4.44 16 7 C -0.39 -11.02 9.49 30.88 0.29 -10.73 16 8 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 9 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 10 N -0.86 -25.08 13.67 55.48 0.76 -24.32 16 11 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 C -0.16 -3.42 5.41 -104.44 -0.56 -3.99 16 16 C 0.12 2.43 5.48 -4.98 -0.03 2.40 16 17 N -0.67 -12.56 6.49 -115.06 -0.75 -13.30 16 18 C 0.07 1.09 5.14 -3.83 -0.02 1.07 16 19 C -0.10 -1.38 3.13 -90.62 -0.28 -1.66 16 20 C -0.15 -1.80 8.96 37.16 0.33 -1.47 16 21 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 22 C -0.07 -1.25 9.32 -39.61 -0.37 -1.61 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.08 1.82 7.86 -51.93 -0.41 1.41 16 30 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 31 H 0.33 5.68 6.97 -39.29 -0.27 5.41 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.06 0.75 6.68 -51.93 -0.35 0.40 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 1.66 8.03 -52.49 -0.42 1.24 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -29.92 337.22 -8.22 -38.13 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.64 Total: 7.74 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -1.65 Total: -24.62 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.01 Total: -37.62 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.00 Total: -4.44 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.92 -8.22 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071407335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.879 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds