Wall clock time and date at job start Mon Mar 30 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38320 * 119.92787 * 2 1 4 4 C 1.38083 * 120.06500 * 180.02562 * 3 2 1 5 5 C 1.38902 * 119.93025 * 359.97438 * 4 3 2 6 6 O 1.35756 * 120.06557 * 179.97438 * 5 4 3 7 7 C 1.34826 * 117.00170 * 354.39704 * 6 5 4 8 8 H 1.08005 * 119.99737 * 5.06825 * 7 6 5 9 9 C 1.38649 * 120.00042 * 185.06351 * 7 6 5 10 10 N 1.31555 * 120.00004 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99991 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47112 * 60.00322 * 11 9 7 13 13 H 1.48504 * 109.46934 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.46936 * 299.99968 * 11 9 7 15 15 C 1.38861 * 119.86233 * 359.97438 * 5 4 3 16 16 C 1.50698 * 120.03260 * 180.02562 * 15 5 4 17 17 N 1.46896 * 109.47115 * 80.00092 * 16 15 5 18 18 C 1.46898 * 111.00162 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47323 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47027 * 65.00203 * 19 18 17 21 21 C 1.53006 * 109.47345 * 185.00019 * 19 18 17 22 22 C 1.38117 * 119.92981 * 0.28255 * 15 5 4 23 23 H 1.08998 * 109.46994 * 89.99962 * 1 2 3 24 24 H 1.09001 * 109.47154 * 209.99862 * 1 2 3 25 25 H 1.08999 * 109.46647 * 329.99629 * 1 2 3 26 26 H 1.07999 * 119.97218 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.03252 * 179.97438 * 4 3 2 28 28 H 0.97000 * 119.99796 * 179.97438 * 10 9 7 29 29 H 1.09005 * 109.47342 * 320.00307 * 16 15 5 30 30 H 1.09000 * 109.47260 * 200.00580 * 16 15 5 31 31 H 1.00896 * 110.99999 * 56.04721 * 17 16 15 32 32 H 1.09004 * 109.47269 * 300.00741 * 18 17 16 33 33 H 1.09006 * 109.47160 * 60.00018 * 18 17 16 34 34 H 1.09000 * 109.47093 * 305.00183 * 19 18 17 35 35 H 1.09001 * 109.46949 * 299.99725 * 20 19 18 36 36 H 1.09000 * 109.47200 * 60.00046 * 20 19 18 37 37 H 1.09008 * 109.47086 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46813 * 60.00054 * 21 19 18 39 39 H 1.08998 * 109.47136 * 179.97438 * 21 19 18 40 40 H 1.09003 * 109.46907 * 300.00579 * 21 19 18 41 41 H 1.08000 * 119.96126 * 179.72517 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1988 0.0000 4 6 3.5780 1.2021 -0.0005 5 6 4.2739 0.0000 -0.0005 6 8 5.6315 0.0000 -0.0016 7 6 6.2435 1.1955 -0.1199 8 1 5.6585 2.1034 -0.1259 9 6 7.6238 1.2595 -0.2337 10 7 8.3363 0.1536 -0.2268 11 14 8.4718 2.9159 -0.3969 12 1 8.1716 3.7455 0.7976 13 1 9.9390 2.7126 -0.5029 14 1 7.9789 3.6063 -1.6157 15 6 3.5782 -1.2018 0.0005 16 6 4.3293 -2.5082 0.0011 17 7 4.7824 -2.8119 1.3651 18 6 5.5197 -4.0818 1.4044 19 6 5.9738 -4.3638 2.8379 20 6 4.7481 -4.5797 3.7279 21 6 6.8468 -5.6202 2.8587 22 6 2.1970 -1.1984 -0.0043 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5139 26 1 1.6556 2.1331 -0.0004 27 1 4.1163 2.1383 -0.0010 28 1 9.3020 0.1983 -0.3069 29 1 5.1927 -2.4313 -0.6598 30 1 3.6731 -3.3048 -0.3497 31 1 4.0061 -2.8248 2.0095 32 1 4.8714 -4.8891 1.0635 33 1 6.3913 -4.0162 0.7531 34 1 6.5484 -3.5158 3.2105 35 1 4.1262 -3.6847 3.7132 36 1 4.1734 -5.4277 3.3554 37 1 5.0716 -4.7802 4.7494 38 1 7.7199 -5.4663 2.2246 39 1 7.1706 -5.8208 3.8799 40 1 6.2721 -6.4681 2.4861 41 1 1.6554 -2.1327 -0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071407335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:22 Heat of formation + Delta-G solvation = -41.609830 kcal Electronic energy + Delta-G solvation = -19866.493637 eV Core-core repulsion = 16938.441671 eV Total energy + Delta-G solvation = -2928.051966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88339 -38.53461 -38.11839 -35.23956 -34.25045 -32.35641 -31.79141 -28.05249 -27.82786 -27.34892 -26.34228 -24.60298 -23.01125 -21.43381 -20.81236 -19.73437 -18.61470 -17.15994 -16.53967 -16.32711 -16.02231 -15.78243 -15.31460 -15.11610 -15.04745 -14.66862 -14.30087 -14.16579 -13.88883 -13.65129 -13.56464 -13.26754 -13.08925 -12.83238 -12.79148 -12.62039 -12.27504 -12.19819 -12.05656 -12.00332 -11.74596 -11.59835 -11.55878 -11.03523 -10.70663 -9.65917 -9.17150 -8.72603 -8.39862 -6.05513 0.58050 0.79522 1.34373 1.45114 1.49780 2.20222 2.82953 3.14919 3.51731 3.61864 3.94709 3.99837 4.07115 4.10511 4.22590 4.24818 4.41798 4.55828 4.62201 4.64263 4.76020 4.77299 4.83344 4.85577 4.91657 4.99342 4.99867 5.05772 5.08124 5.20796 5.25376 5.30503 5.43774 5.44921 5.46675 5.66093 5.79364 5.88162 6.06620 6.21927 6.32672 6.63584 7.04304 7.90277 8.81950 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.007728 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.473683 B = 3622.454025 C = 5952.692837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.170 4.170 3 C -0.074 4.074 4 C -0.251 4.251 5 C 0.128 3.872 6 O -0.207 6.207 7 C -0.414 4.414 8 H 0.094 0.906 9 C -0.019 4.019 10 N -0.912 5.912 11 Si 1.012 2.988 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.259 1.259 15 C -0.168 4.168 16 C 0.131 3.869 17 N -0.693 5.693 18 C 0.071 3.929 19 C -0.096 4.096 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.067 4.067 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.269 0.731 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.341 0.659 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 -6.422 3.727 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.170 4.170 3 C -0.092 4.092 4 C -0.271 4.271 5 C 0.076 3.924 6 O -0.112 6.112 7 C -0.491 4.491 8 H 0.112 0.888 9 C -0.217 4.217 10 N -0.550 5.550 11 Si 0.831 3.169 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.184 1.184 15 C -0.169 4.169 16 C 0.003 3.997 17 N -0.326 5.326 18 C -0.058 4.058 19 C -0.115 4.115 20 C -0.198 4.198 21 C -0.197 4.197 22 C -0.086 4.086 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.341 -6.303 3.677 12.656 hybrid contribution 0.365 0.394 -0.349 0.640 sum -9.976 -5.909 3.327 12.063 Atomic orbital electron populations 1.20597 0.88737 1.03090 1.02370 1.19934 0.97485 0.92175 1.07431 1.20990 0.92186 0.98733 0.97292 1.21280 0.95910 0.97336 1.12532 1.19713 0.84370 0.94521 0.93775 1.84025 1.14426 1.32295 1.80456 1.21729 0.91036 0.83967 1.52338 0.88836 1.26443 0.95829 1.03259 0.96178 1.70207 1.06809 1.29514 1.48479 0.84753 0.77079 0.75353 0.79665 1.18468 1.19673 1.18366 1.19189 0.93846 0.92344 1.11534 1.20318 0.96346 0.92657 0.90369 1.60281 1.30400 1.34492 1.07384 1.21954 0.97173 0.89225 0.97439 1.21096 0.97708 0.98358 0.94342 1.21793 0.96875 1.01512 0.99574 1.21751 0.99052 0.96572 1.02284 1.20835 0.91104 0.98705 0.97927 0.91168 0.90862 0.91226 0.84550 0.86869 0.92210 0.94312 0.93086 0.83883 0.93993 0.93827 0.93215 0.93283 0.91570 0.91603 0.93650 0.91373 0.91418 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 10.01 71.24 0.71 -1.26 16 2 C -0.17 -5.36 5.88 -19.83 -0.12 -5.48 16 3 C -0.07 -2.64 9.69 22.25 0.22 -2.43 16 4 C -0.25 -11.40 9.17 22.39 0.21 -11.19 16 5 C 0.13 6.50 6.62 22.58 0.15 6.65 16 6 O -0.21 -12.57 9.00 -22.76 -0.20 -12.77 16 7 C -0.41 -24.76 9.49 67.92 0.64 -24.11 16 8 H 0.09 5.20 5.20 -2.91 -0.02 5.19 16 9 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 10 N -0.91 -57.10 13.67 21.61 0.30 -56.81 16 11 Si 1.01 44.26 29.55 68.60 2.03 46.29 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 15 C -0.17 -7.11 5.41 -19.74 -0.11 -7.21 16 16 C 0.13 5.29 5.48 85.56 0.47 5.76 16 17 N -0.69 -26.63 6.49 -517.94 -3.36 -29.99 16 18 C 0.07 2.34 5.14 86.30 0.44 2.78 16 19 C -0.10 -2.74 3.13 -10.79 -0.03 -2.77 16 20 C -0.14 -3.20 8.96 71.98 0.65 -2.56 16 21 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 22 C -0.07 -2.26 9.32 22.25 0.21 -2.06 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 25 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 26 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.04 1.87 7.86 -2.38 -0.02 1.85 16 30 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 31 H 0.34 11.62 6.97 -89.70 -0.63 10.99 16 32 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.20 6.68 -2.39 -0.02 1.19 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 41 H 0.14 3.77 8.03 -2.91 -0.02 3.75 16 Total: -1.00 -71.40 337.22 3.70 -67.70 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.38 Total: 32.67 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 4.56 Total: -47.09 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -3.07 Total: -86.80 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.20 Total: -12.77 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.40 3.70 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071407335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.087 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds