Wall clock time and date at job start Mon Mar 30 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38290 * 119.94426 * 2 1 4 4 C 1.38121 * 120.05462 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94773 * 359.81117 * 4 3 2 6 6 O 1.35899 * 120.06045 * 180.23507 * 5 4 3 7 7 C 1.42902 * 116.99769 * 0.20430 * 6 5 4 8 8 C 1.53000 * 109.46773 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47013 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00183 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00199 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00242 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47026 * 90.00075 * 13 11 9 15 15 H 1.48498 * 109.47008 * 210.00266 * 13 11 9 16 16 H 1.48497 * 109.46609 * 329.99964 * 13 11 9 17 17 C 1.38717 * 119.88397 * 0.43868 * 5 4 3 18 18 C 1.50701 * 120.02546 * 179.79290 * 17 5 4 19 19 C 1.52997 * 109.47212 * 84.72533 * 18 17 5 20 20 H 1.09008 * 109.47017 * 54.99761 * 19 18 17 21 21 C 1.52994 * 109.47404 * 174.99684 * 19 18 17 22 22 N 1.46904 * 109.47449 * 295.00105 * 19 18 17 23 23 C 1.38159 * 119.94263 * 359.51838 * 17 5 4 24 24 H 1.08997 * 109.47682 * 269.98371 * 1 2 3 25 25 H 1.09008 * 109.46641 * 29.98418 * 1 2 3 26 26 H 1.09005 * 109.46930 * 149.97550 * 1 2 3 27 27 H 1.07998 * 119.97541 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.02826 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47142 * 300.00353 * 7 6 5 30 30 H 1.09006 * 109.47170 * 60.00300 * 7 6 5 31 31 H 1.09000 * 109.47533 * 300.00062 * 8 7 6 32 32 H 1.09000 * 109.47437 * 60.00461 * 8 7 6 33 33 H 0.97000 * 120.00530 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.47060 * 204.72589 * 18 17 5 35 35 H 1.09001 * 109.47380 * 324.72676 * 18 17 5 36 36 H 1.09008 * 109.46970 * 60.00049 * 21 19 18 37 37 H 1.08996 * 109.47654 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.47476 * 300.00087 * 21 19 18 39 39 H 1.00898 * 111.00551 * 176.04613 * 22 19 18 40 40 H 1.00898 * 110.99372 * 300.00401 * 22 19 18 41 41 H 1.08003 * 119.96941 * 180.25153 * 23 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0050 6 8 5.6324 0.0000 0.0104 7 6 6.2812 1.2733 0.0156 8 6 7.7980 1.0727 0.0205 9 6 8.4822 2.4155 0.0254 10 1 7.8940 3.3213 0.0255 11 6 9.8590 2.4876 0.0298 12 7 10.5753 1.3847 0.0293 13 14 10.7071 4.1521 0.0366 14 1 10.9275 4.5896 1.4384 15 1 12.0142 4.0444 -0.6597 16 1 9.8536 5.1452 -0.6636 17 6 3.5787 -1.2006 -0.0002 18 6 4.3303 -2.5068 -0.0001 19 6 4.6940 -2.8857 1.4369 20 1 3.7912 -2.9037 2.0475 21 6 5.3460 -4.2697 1.4499 22 7 5.6338 -1.8966 1.9814 23 6 2.1971 -1.1978 0.0001 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6560 2.1328 0.0004 28 1 4.1172 2.1371 0.0010 29 1 5.9917 1.8322 -0.8743 30 1 5.9848 1.8284 0.9057 31 1 8.0877 0.5137 0.9102 32 1 8.0940 0.5178 -0.8697 33 1 11.5440 1.4354 0.0320 34 1 3.7041 -3.2863 -0.4340 35 1 5.2410 -2.4020 -0.5898 36 1 6.2488 -4.2518 0.8393 37 1 5.6056 -4.5396 2.4736 38 1 4.6488 -5.0037 1.0461 39 1 5.8396 -2.0883 2.9503 40 1 6.4795 -1.8609 1.4322 41 1 1.6557 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071411991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:50 Heat of formation + Delta-G solvation = -43.246398 kcal Electronic energy + Delta-G solvation = -19865.842856 eV Core-core repulsion = 16937.719923 eV Total energy + Delta-G solvation = -2928.122933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83834 -37.19703 -36.37294 -33.37688 -32.12398 -31.14855 -29.98381 -28.64227 -26.70226 -25.87616 -24.74972 -22.37907 -21.05649 -20.30722 -19.89422 -17.57689 -16.19611 -16.04347 -15.40603 -15.11355 -14.85198 -14.46424 -14.09300 -13.93913 -13.64707 -13.42301 -13.00562 -12.85378 -12.45778 -12.27903 -12.24260 -12.06286 -11.76966 -11.54944 -11.16325 -11.12413 -10.92009 -10.74789 -10.66286 -10.61510 -10.23467 -9.67585 -9.58576 -9.24139 -8.51831 -8.41196 -8.22601 -7.42076 -6.07706 -4.11129 1.67572 1.86278 3.29025 3.35131 3.38124 4.02309 4.11232 4.45688 4.78339 4.96985 5.09663 5.13688 5.20223 5.29160 5.34747 5.46180 5.47948 5.53282 5.66784 5.75669 5.80338 5.89068 5.93991 6.02060 6.04487 6.10386 6.17518 6.24673 6.31835 6.46771 6.66326 6.79105 6.86486 6.92888 7.21572 7.56815 7.57971 7.71478 7.87528 7.89455 8.23156 8.32022 8.94576 9.52931 11.03822 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.004912 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.328087 B = 5698.739423 C = 6933.933389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.146 4.146 3 C -0.084 4.084 4 C -0.215 4.215 5 C 0.170 3.830 6 O -0.296 6.296 7 C 0.067 3.933 8 C 0.030 3.970 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.110 4.110 18 C -0.063 4.063 19 C 0.096 3.904 20 H 0.072 0.928 21 C -0.188 4.188 22 N -0.831 5.831 23 C -0.086 4.086 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.331 0.669 40 H 0.351 0.649 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 -7.660 1.318 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.147 4.147 3 C -0.102 4.102 4 C -0.234 4.234 5 C 0.122 3.878 6 O -0.208 6.208 7 C -0.008 4.008 8 C -0.007 4.007 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.111 4.111 18 C -0.101 4.101 19 C -0.016 4.016 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.361 5.361 23 C -0.104 4.104 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.306 -7.336 1.144 17.917 hybrid contribution 1.159 0.385 0.212 1.240 sum -15.147 -6.951 1.356 16.721 Atomic orbital electron populations 1.20624 0.91860 1.01911 1.01473 1.19582 0.95489 0.93118 1.06486 1.20700 0.93434 0.97128 0.98980 1.21315 0.95074 0.97770 1.09200 1.18821 0.83941 0.92723 0.92297 1.86146 1.14540 1.33754 1.86365 1.23218 0.96319 0.82068 0.99166 1.19058 0.85374 0.97753 0.98549 1.21006 0.91441 0.91999 1.51764 0.92523 1.24961 0.97421 0.96703 0.95013 1.69968 1.05953 1.26912 1.50081 0.86528 0.78947 0.83963 0.78193 1.20542 1.21119 1.19802 1.18965 0.92578 0.93194 1.06384 1.20436 0.99949 0.93386 0.96280 1.21358 0.96079 0.88613 0.95575 0.90965 1.22693 1.01499 0.98995 1.01556 1.58756 1.19679 1.51407 1.06279 1.20596 0.92542 0.97161 1.00065 0.92103 0.92248 0.92267 0.86743 0.85587 0.93857 0.93414 0.95384 0.95759 0.92837 0.91533 0.90575 0.92449 0.92960 0.92580 0.85682 0.83456 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.15 -1.96 5.88 -104.60 -0.62 -2.57 16 3 C -0.08 -1.22 9.69 -39.61 -0.38 -1.60 16 4 C -0.21 -3.60 9.04 -39.43 -0.36 -3.96 16 5 C 0.17 3.02 6.29 -39.21 -0.25 2.77 16 6 O -0.30 -5.86 7.50 -19.42 -0.15 -6.01 16 7 C 0.07 1.43 4.68 37.16 0.17 1.61 16 8 C 0.03 0.77 5.34 -27.88 -0.15 0.62 16 9 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 10 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 13 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C -0.11 -1.71 5.04 -104.47 -0.53 -2.24 16 18 C -0.06 -0.86 4.77 -27.88 -0.13 -0.99 16 19 C 0.10 1.22 3.34 -67.71 -0.23 0.99 16 20 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 21 C -0.19 -2.03 9.48 37.15 0.35 -1.67 16 22 N -0.83 -12.21 7.48 -4.67 -0.03 -12.24 16 23 C -0.09 -1.17 9.33 -39.61 -0.37 -1.54 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.54 8.08 -51.92 -0.42 0.12 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 2.10 6.30 -52.48 -0.33 1.77 16 29 H 0.04 0.91 7.65 -51.93 -0.40 0.51 16 30 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.33 4.33 9.07 -39.29 -0.36 3.97 16 40 H 0.35 5.67 8.41 -39.29 -0.33 5.34 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -29.53 336.76 -8.74 -38.26 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.82 Total: 6.66 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.53 Total: -22.52 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.70 Total: -37.78 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.15 Total: -6.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.53 -8.74 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071411991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.982 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds