Wall clock time and date at job start Mon Mar 30 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38290 * 119.94426 * 2 1 4 4 C 1.38121 * 120.05462 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94773 * 359.81117 * 4 3 2 6 6 O 1.35899 * 120.06045 * 180.23507 * 5 4 3 7 7 C 1.42902 * 116.99769 * 0.20430 * 6 5 4 8 8 C 1.53000 * 109.46773 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47013 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00183 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00199 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00242 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47026 * 90.00075 * 13 11 9 15 15 H 1.48498 * 109.47008 * 210.00266 * 13 11 9 16 16 H 1.48497 * 109.46609 * 329.99964 * 13 11 9 17 17 C 1.38717 * 119.88397 * 0.43868 * 5 4 3 18 18 C 1.50701 * 120.02546 * 179.79290 * 17 5 4 19 19 C 1.52997 * 109.47212 * 84.72533 * 18 17 5 20 20 H 1.09008 * 109.47017 * 54.99761 * 19 18 17 21 21 C 1.52994 * 109.47404 * 174.99684 * 19 18 17 22 22 N 1.46904 * 109.47449 * 295.00105 * 19 18 17 23 23 C 1.38159 * 119.94263 * 359.51838 * 17 5 4 24 24 H 1.08997 * 109.47682 * 269.98371 * 1 2 3 25 25 H 1.09008 * 109.46641 * 29.98418 * 1 2 3 26 26 H 1.09005 * 109.46930 * 149.97550 * 1 2 3 27 27 H 1.07998 * 119.97541 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.02826 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47142 * 300.00353 * 7 6 5 30 30 H 1.09006 * 109.47170 * 60.00300 * 7 6 5 31 31 H 1.09000 * 109.47533 * 300.00062 * 8 7 6 32 32 H 1.09000 * 109.47437 * 60.00461 * 8 7 6 33 33 H 0.97000 * 120.00530 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.47060 * 204.72589 * 18 17 5 35 35 H 1.09001 * 109.47380 * 324.72676 * 18 17 5 36 36 H 1.09008 * 109.46970 * 60.00049 * 21 19 18 37 37 H 1.08996 * 109.47654 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.47476 * 300.00087 * 21 19 18 39 39 H 1.00898 * 111.00551 * 176.04613 * 22 19 18 40 40 H 1.00898 * 110.99372 * 300.00401 * 22 19 18 41 41 H 1.08003 * 119.96941 * 180.25153 * 23 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0050 6 8 5.6324 0.0000 0.0104 7 6 6.2812 1.2733 0.0156 8 6 7.7980 1.0727 0.0205 9 6 8.4822 2.4155 0.0254 10 1 7.8940 3.3213 0.0255 11 6 9.8590 2.4876 0.0298 12 7 10.5753 1.3847 0.0293 13 14 10.7071 4.1521 0.0366 14 1 10.9275 4.5896 1.4384 15 1 12.0142 4.0444 -0.6597 16 1 9.8536 5.1452 -0.6636 17 6 3.5787 -1.2006 -0.0002 18 6 4.3303 -2.5068 -0.0001 19 6 4.6940 -2.8857 1.4369 20 1 3.7912 -2.9037 2.0475 21 6 5.3460 -4.2697 1.4499 22 7 5.6338 -1.8966 1.9814 23 6 2.1971 -1.1978 0.0001 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6560 2.1328 0.0004 28 1 4.1172 2.1371 0.0010 29 1 5.9917 1.8322 -0.8743 30 1 5.9848 1.8284 0.9057 31 1 8.0877 0.5137 0.9102 32 1 8.0940 0.5178 -0.8697 33 1 11.5440 1.4354 0.0320 34 1 3.7041 -3.2863 -0.4340 35 1 5.2410 -2.4020 -0.5898 36 1 6.2488 -4.2518 0.8393 37 1 5.6056 -4.5396 2.4736 38 1 4.6488 -5.0037 1.0461 39 1 5.8396 -2.0883 2.9503 40 1 6.4795 -1.8609 1.4322 41 1 1.6557 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071411991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:50 Heat of formation + Delta-G solvation = -60.150963 kcal Electronic energy + Delta-G solvation = -19866.575893 eV Core-core repulsion = 16937.719923 eV Total energy + Delta-G solvation = -2928.855970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10215 -38.57673 -37.42496 -35.43596 -33.35299 -32.34120 -31.82803 -29.70104 -27.72630 -27.28608 -26.36406 -23.93624 -22.27779 -21.81437 -20.99620 -19.13755 -18.06104 -17.35358 -16.82755 -16.57626 -16.36183 -15.94875 -15.25830 -15.09772 -14.76370 -14.39479 -14.33523 -14.24108 -13.92703 -13.75792 -13.40869 -13.20436 -12.91078 -12.84794 -12.71320 -12.55242 -12.47369 -12.27032 -11.99367 -11.74411 -11.67262 -11.47892 -11.34170 -11.25080 -10.58286 -9.66812 -9.33437 -8.67342 -8.24294 -6.36522 0.51212 0.67753 1.40809 1.42448 1.53441 2.34249 2.67052 2.92116 3.10173 3.72476 3.89478 4.04626 4.11018 4.17666 4.27838 4.36043 4.39361 4.48789 4.52214 4.57382 4.73827 4.77325 4.83962 4.89788 4.93977 4.96541 5.02392 5.11480 5.20019 5.32200 5.37339 5.40572 5.55660 5.57012 5.70186 5.74550 5.79892 6.06884 6.16672 6.46810 6.71782 6.75801 6.80280 7.32947 8.88291 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.004912 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.328087 B = 5698.739423 C = 6933.933389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.139 4.139 3 C -0.093 4.093 4 C -0.231 4.231 5 C 0.131 3.869 6 O -0.307 6.307 7 C 0.089 3.911 8 C 0.039 3.961 9 C -0.546 4.546 10 H 0.063 0.937 11 C 0.006 3.994 12 N -0.928 5.928 13 Si 0.970 3.030 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.263 1.263 17 C -0.116 4.116 18 C -0.062 4.062 19 C 0.098 3.902 20 H 0.080 0.920 21 C -0.180 4.180 22 N -0.846 5.846 23 C -0.087 4.087 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.004 0.996 32 H -0.004 1.004 33 H 0.266 0.734 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.337 0.663 40 H 0.338 0.662 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.433 -7.601 1.467 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C -0.111 4.111 4 C -0.250 4.250 5 C 0.085 3.915 6 O -0.220 6.220 7 C 0.014 3.986 8 C 0.002 3.998 9 C -0.584 4.584 10 H 0.082 0.918 11 C -0.193 4.193 12 N -0.567 5.567 13 Si 0.794 3.206 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.116 4.116 18 C -0.100 4.100 19 C -0.013 4.013 20 H 0.098 0.902 21 C -0.239 4.239 22 N -0.376 5.376 23 C -0.104 4.104 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.014 0.986 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.689 -7.286 1.300 20.101 hybrid contribution 1.746 0.292 0.165 1.778 sum -16.944 -6.993 1.465 18.389 Atomic orbital electron populations 1.20697 0.88970 1.03379 1.02671 1.20072 0.97573 0.92448 1.03814 1.21002 0.92525 0.98870 0.98692 1.21412 0.96386 0.97088 1.10143 1.19169 0.82862 0.94323 0.95183 1.86094 1.16300 1.32117 1.87524 1.22682 0.93741 0.83081 0.99127 1.18841 0.88505 0.96560 0.95930 1.21411 0.92231 0.92838 1.51921 0.91845 1.25933 0.98173 1.00891 0.94265 1.70102 1.06396 1.29435 1.50769 0.85377 0.77719 0.78921 0.78609 1.19619 1.20565 1.18671 1.19279 0.93618 0.92969 1.05773 1.20487 0.99223 0.93546 0.96704 1.21378 0.95904 0.89098 0.94927 0.90230 1.22587 1.01215 0.98163 1.01952 1.58770 1.19343 1.52854 1.06627 1.20990 0.91725 0.98795 0.98932 0.90880 0.91173 0.90541 0.84589 0.86546 0.93719 0.93479 0.97808 0.98552 0.92551 0.88732 0.93065 0.93681 0.92229 0.90665 0.84998 0.84912 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.14 -3.31 5.88 -19.85 -0.12 -3.43 16 3 C -0.09 -2.54 9.69 22.25 0.22 -2.33 16 4 C -0.23 -7.83 9.04 22.36 0.20 -7.62 16 5 C 0.13 4.75 6.29 22.51 0.14 4.89 16 6 O -0.31 -12.82 7.50 -92.42 -0.69 -13.52 16 7 C 0.09 4.01 4.68 71.98 0.34 4.35 16 8 C 0.04 2.12 5.34 29.85 0.16 2.28 16 9 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 10 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 11 C 0.01 0.35 5.46 84.65 0.46 0.81 16 12 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 13 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 17 C -0.12 -3.49 5.04 -19.77 -0.10 -3.59 16 18 C -0.06 -1.65 4.77 29.85 0.14 -1.51 16 19 C 0.10 2.43 3.34 44.91 0.15 2.58 16 20 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 21 C -0.18 -3.67 9.48 71.98 0.68 -2.99 16 22 N -0.85 -25.65 7.48 -168.67 -1.26 -26.91 16 23 C -0.09 -2.13 9.33 22.25 0.21 -1.92 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 0.99 8.08 -2.38 -0.02 0.97 16 26 H 0.08 0.99 8.08 -2.38 -0.02 0.97 16 27 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.12 4.02 6.30 -2.91 -0.02 4.01 16 29 H 0.04 1.97 7.65 -2.39 -0.02 1.95 16 30 H 0.05 2.09 7.67 -2.38 -0.02 2.08 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.09 1.93 8.05 -2.39 -0.02 1.92 16 35 H 0.05 1.62 7.70 -2.39 -0.02 1.60 16 36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.34 9.06 9.07 -89.70 -0.81 8.25 16 40 H 0.34 11.69 8.41 -89.70 -0.75 10.94 16 41 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -65.28 336.76 3.23 -62.04 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.55 Total: 28.67 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.43 Total: -40.39 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -0.98 Total: -82.82 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.69 Total: -13.52 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.28 3.23 -62.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071411991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.893 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds