Wall clock time and date at job start Mon Mar 30 2020 06:25:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38287 * 119.94722 * 2 1
4 4 C 1.38115 * 120.05653 * 180.02562 * 3 2 1
5 5 C 1.38750 * 119.94620 * 359.80737 * 4 3 2
6 6 O 1.35899 * 120.06117 * 180.23216 * 5 4 3
7 7 C 1.42901 * 116.99808 * 0.21533 * 6 5 4
8 8 C 1.53004 * 109.47043 * 179.97438 * 7 6 5
9 9 C 1.50698 * 109.46958 * 179.97438 * 8 7 6
10 10 H 1.08004 * 120.00414 * 359.97438 * 9 8 7
11 11 C 1.37875 * 120.00529 * 179.97438 * 9 8 7
12 12 N 1.31516 * 119.99458 * 0.02562 * 11 9 8
13 13 Si 1.86797 * 120.00746 * 179.97438 * 11 9 8
14 14 H 1.48505 * 109.46758 * 0.02562 * 13 11 9
15 15 H 1.48503 * 109.46989 * 119.99881 * 13 11 9
16 16 H 1.48490 * 109.47685 * 240.00325 * 13 11 9
17 17 C 1.38714 * 119.88950 * 0.44252 * 5 4 3
18 18 C 1.50695 * 120.03170 * 179.79320 * 17 5 4
19 19 C 1.52999 * 109.47581 * 84.72477 * 18 17 5
20 20 H 1.09002 * 109.46716 * 305.00061 * 19 18 17
21 21 C 1.52997 * 109.47317 * 185.00152 * 19 18 17
22 22 N 1.46894 * 109.46927 * 64.99671 * 19 18 17
23 23 C 1.38167 * 119.93902 * 359.51714 * 17 5 4
24 24 H 1.09000 * 109.47205 * 269.97962 * 1 2 3
25 25 H 1.08998 * 109.46938 * 29.98296 * 1 2 3
26 26 H 1.08994 * 109.47220 * 149.97796 * 1 2 3
27 27 H 1.07999 * 119.96674 * 0.02562 * 3 2 1
28 28 H 1.08004 * 120.03143 * 180.02562 * 4 3 2
29 29 H 1.09003 * 109.46894 * 299.99500 * 7 6 5
30 30 H 1.08995 * 109.47454 * 59.99791 * 7 6 5
31 31 H 1.08994 * 109.47190 * 299.98996 * 8 7 6
32 32 H 1.08995 * 109.47161 * 59.99618 * 8 7 6
33 33 H 0.96998 * 120.00200 * 179.97438 * 12 11 9
34 34 H 1.08998 * 109.47061 * 324.71691 * 18 17 5
35 35 H 1.09000 * 109.47118 * 204.72286 * 18 17 5
36 36 H 1.09002 * 109.47153 * 299.99641 * 21 19 18
37 37 H 1.09001 * 109.46832 * 179.97438 * 21 19 18
38 38 H 1.09004 * 109.47261 * 59.99813 * 21 19 18
39 39 H 1.00906 * 111.00039 * 180.02562 * 22 19 18
40 40 H 1.00899 * 111.00319 * 303.95632 * 22 19 18
41 41 H 1.08002 * 119.97337 * 180.25683 * 23 17 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1974 1.1982 0.0000
4 6 3.5785 1.2009 -0.0005
5 6 4.2734 -0.0001 0.0030
6 8 5.6324 -0.0002 0.0072
7 6 6.2812 1.2730 0.0126
8 6 7.7980 1.0724 0.0175
9 6 8.4822 2.4151 0.0225
10 1 7.8941 3.3210 0.0219
11 6 9.8591 2.4874 0.0280
12 7 10.5753 1.3843 0.0283
13 14 10.7072 4.1517 0.0335
14 1 9.6845 5.2284 0.0316
15 1 11.5510 4.2732 1.2495
16 1 11.5603 4.2766 -1.1754
17 6 3.5787 -1.2007 -0.0023
18 6 4.3302 -2.5069 -0.0032
19 6 4.6950 -2.8865 1.4333
20 1 5.2463 -2.0682 1.8965
21 6 5.5641 -4.1456 1.4231
22 7 3.4678 -3.1448 2.1982
23 6 2.1971 -1.1979 -0.0009
24 1 -0.3633 -0.0004 1.0277
25 1 -0.3633 0.8901 -0.5136
26 1 -0.3633 -0.8897 -0.5141
27 1 1.6560 2.1327 0.0004
28 1 4.1172 2.1369 -0.0001
29 1 5.9912 1.8323 -0.8769
30 1 5.9856 1.8277 0.9031
31 1 8.0877 0.5134 0.9072
32 1 8.0940 0.5176 -0.8728
33 1 11.5440 1.4350 0.0317
34 1 5.2404 -2.4019 -0.5936
35 1 3.7037 -3.2862 -0.4370
36 1 5.0128 -4.9640 0.9599
37 1 5.8244 -4.4158 2.4465
38 1 6.4748 -3.9539 0.8555
39 1 3.6821 -3.3974 3.1513
40 1 2.8475 -2.3497 2.1659
41 1 1.6556 -2.1324 -0.0008
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000071411992.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:25:53
Heat of formation + Delta-G solvation = -46.935758 kcal
Electronic energy + Delta-G solvation = -19695.042518 eV
Core-core repulsion = 16766.759603 eV
Total energy + Delta-G solvation = -2928.282915 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 263.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.06164 -37.45396 -36.36758 -33.46549 -32.17663 -31.23090 -30.08892 -29.16777
-26.72958 -25.98686 -24.87846 -22.44525 -21.16738 -20.45444 -19.74800 -17.70042
-16.16333 -16.12127 -15.73906 -15.24240 -15.15652 -14.84678 -14.52807 -14.09375
-13.66846 -13.61015 -13.07429 -12.71993 -12.36270 -12.31629 -12.25415 -11.83019
-11.77808 -11.54902 -11.39194 -11.17770 -11.08668 -10.91724 -10.79882 -10.67261
-10.31153 -9.83096 -9.67880 -9.30850 -8.76198 -8.51422 -8.47453 -7.65441
-6.12903 -4.17487 1.49768 1.64565 3.24552 3.31808 3.35276 3.84810
3.89485 4.39355 4.62523 4.84133 4.96731 5.06727 5.18724 5.23739
5.31601 5.35470 5.44897 5.59060 5.60635 5.72470 5.81481 5.84990
5.94974 5.99944 6.01467 6.07142 6.09222 6.16565 6.30793 6.40865
6.51254 6.64192 6.70769 6.77324 7.04417 7.23436 7.47986 7.50796
7.61260 7.79407 8.04735 8.21585 8.88240 9.47087 10.98666
Molecular weight = 263.16amu
Principal moments of inertia in cm(-1)
A = 0.019447 B = 0.004670 C = 0.003879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1439.433673 B = 5993.681909 C = 7216.273637
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C -0.140 4.140
3 C -0.084 4.084
4 C -0.209 4.209
5 C 0.141 3.859
6 O -0.312 6.312
7 C 0.065 3.935
8 C 0.027 3.973
9 C -0.526 4.526
10 H 0.058 0.942
11 C 0.061 3.939
12 N -0.889 5.889
13 Si 0.898 3.102
14 H -0.272 1.272
15 H -0.282 1.282
16 H -0.282 1.282
17 C -0.124 4.124
18 C -0.063 4.063
19 C 0.091 3.909
20 H 0.041 0.959
21 C -0.143 4.143
22 N -0.847 5.847
23 C -0.078 4.078
24 H 0.063 0.937
25 H 0.060 0.940
26 H 0.061 0.939
27 H 0.118 0.882
28 H 0.129 0.871
29 H 0.049 0.951
30 H 0.048 0.952
31 H 0.027 0.973
32 H 0.027 0.973
33 H 0.263 0.737
34 H 0.081 0.919
35 H 0.073 0.927
36 H 0.059 0.941
37 H 0.050 0.950
38 H 0.063 0.937
39 H 0.335 0.665
40 H 0.340 0.660
41 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.018 -6.018 1.748 18.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.140 4.140
3 C -0.102 4.102
4 C -0.227 4.227
5 C 0.094 3.906
6 O -0.225 6.225
7 C -0.009 4.009
8 C -0.010 4.010
9 C -0.565 4.565
10 H 0.076 0.924
11 C -0.141 4.141
12 N -0.527 5.527
13 Si 0.725 3.275
14 H -0.197 1.197
15 H -0.208 1.208
16 H -0.208 1.208
17 C -0.125 4.125
18 C -0.101 4.101
19 C -0.020 4.020
20 H 0.060 0.940
21 C -0.201 4.201
22 N -0.378 5.378
23 C -0.096 4.096
24 H 0.081 0.919
25 H 0.079 0.921
26 H 0.080 0.920
27 H 0.136 0.864
28 H 0.147 0.853
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.045 0.955
32 H 0.046 0.954
33 H 0.072 0.928
34 H 0.100 0.900
35 H 0.092 0.908
36 H 0.078 0.922
37 H 0.069 0.931
38 H 0.082 0.918
39 H 0.147 0.853
40 H 0.153 0.847
41 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -16.787 -6.826 1.213 18.163
hybrid contribution 0.854 2.106 0.610 2.353
sum -15.934 -4.719 1.823 16.718
Atomic orbital electron populations
1.20650 0.91541 1.02170 1.01696 1.19701 0.95769 0.93059 1.05516
1.20765 0.93330 0.97384 0.98705 1.21340 0.95169 0.97682 1.08550
1.19058 0.83959 0.93249 0.94347 1.86162 1.14673 1.34692 1.86957
1.23314 0.96483 0.81576 0.99526 1.19107 0.85106 0.98041 0.98783
1.21009 0.91495 0.91810 1.52152 0.92370 1.24982 0.97414 0.96849
0.94886 1.69983 1.06018 1.26938 1.49772 0.86443 0.79557 0.83722
0.77747 1.19651 1.20827 1.20800 1.19241 0.93166 0.93235 1.06857
1.20460 1.00206 0.93041 0.96344 1.21253 0.90159 0.96650 0.93897
0.94048 1.21794 0.99323 0.97341 1.01645 1.58891 1.16780 1.44422
1.17724 1.20725 0.92371 0.97483 0.98995 0.91871 0.92125 0.91985
0.86415 0.85325 0.93234 0.93336 0.95497 0.95424 0.92757 0.90017
0.90829 0.92187 0.93061 0.91812 0.85305 0.84671 0.85618
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.95 10.01 36.01 0.36 -0.59 16
2 C -0.14 -1.73 5.88 -104.60 -0.62 -2.34 16
3 C -0.08 -1.12 9.69 -39.61 -0.38 -1.50 16
4 C -0.21 -3.31 9.04 -39.44 -0.36 -3.66 16
5 C 0.14 2.44 6.66 -39.22 -0.26 2.18 16
6 O -0.31 -6.28 9.28 -19.42 -0.18 -6.46 16
7 C 0.07 1.39 4.68 37.16 0.17 1.56 16
8 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16
9 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16
10 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16
11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
12 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16
13 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16
14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16
15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
17 C -0.12 -1.86 4.60 -104.47 -0.48 -2.34 16
18 C -0.06 -0.89 4.74 -27.89 -0.13 -1.02 16
19 C 0.09 1.24 3.42 -67.72 -0.23 1.01 16
20 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
21 C -0.14 -1.76 9.49 37.16 0.35 -1.40 16
22 N -0.85 -9.91 9.24 -4.67 -0.04 -9.95 16
23 C -0.08 -1.00 8.17 -39.60 -0.32 -1.32 16
24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16
26 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16
27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16
28 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16
29 H 0.05 1.02 7.65 -51.93 -0.40 0.62 16
30 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16
31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
34 H 0.08 1.28 7.70 -51.93 -0.40 0.88 16
35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16
36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
39 H 0.34 3.44 9.04 -39.29 -0.36 3.09 16
40 H 0.34 3.99 7.15 -39.29 -0.28 3.71 16
41 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16
LS Contribution 337.85 15.07 5.09 5.09
Total: -1.00 -29.47 337.85 -8.64 -38.11
By element:
Atomic # 1 Polarization: 11.58 SS G_CDS: -6.77 Total: 4.81 kcal
Atomic # 6 Polarization: -19.76 SS G_CDS: -2.46 Total: -22.22 kcal
Atomic # 7 Polarization: -36.21 SS G_CDS: 0.69 Total: -35.52 kcal
Atomic # 8 Polarization: -6.28 SS G_CDS: -0.18 Total: -6.46 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -29.47 -8.64 -38.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000071411992.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.828 kcal
(2) G-P(sol) polarization free energy of solvation -29.467 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.295 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds