Wall clock time and date at job start Mon Mar 30 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.94722 * 2 1 4 4 C 1.38115 * 120.05653 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.94620 * 359.80737 * 4 3 2 6 6 O 1.35899 * 120.06117 * 180.23216 * 5 4 3 7 7 C 1.42901 * 116.99808 * 0.21533 * 6 5 4 8 8 C 1.53004 * 109.47043 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46958 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00414 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00529 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99458 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00746 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46758 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46989 * 119.99881 * 13 11 9 16 16 H 1.48490 * 109.47685 * 240.00325 * 13 11 9 17 17 C 1.38714 * 119.88950 * 0.44252 * 5 4 3 18 18 C 1.50695 * 120.03170 * 179.79320 * 17 5 4 19 19 C 1.52999 * 109.47581 * 84.72477 * 18 17 5 20 20 H 1.09002 * 109.46716 * 305.00061 * 19 18 17 21 21 C 1.52997 * 109.47317 * 185.00152 * 19 18 17 22 22 N 1.46894 * 109.46927 * 64.99671 * 19 18 17 23 23 C 1.38167 * 119.93902 * 359.51714 * 17 5 4 24 24 H 1.09000 * 109.47205 * 269.97962 * 1 2 3 25 25 H 1.08998 * 109.46938 * 29.98296 * 1 2 3 26 26 H 1.08994 * 109.47220 * 149.97796 * 1 2 3 27 27 H 1.07999 * 119.96674 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.03143 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.46894 * 299.99500 * 7 6 5 30 30 H 1.08995 * 109.47454 * 59.99791 * 7 6 5 31 31 H 1.08994 * 109.47190 * 299.98996 * 8 7 6 32 32 H 1.08995 * 109.47161 * 59.99618 * 8 7 6 33 33 H 0.96998 * 120.00200 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47061 * 324.71691 * 18 17 5 35 35 H 1.09000 * 109.47118 * 204.72286 * 18 17 5 36 36 H 1.09002 * 109.47153 * 299.99641 * 21 19 18 37 37 H 1.09001 * 109.46832 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.47261 * 59.99813 * 21 19 18 39 39 H 1.00906 * 111.00039 * 180.02562 * 22 19 18 40 40 H 1.00899 * 111.00319 * 303.95632 * 22 19 18 41 41 H 1.08002 * 119.97337 * 180.25683 * 23 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 0.0030 6 8 5.6324 -0.0002 0.0072 7 6 6.2812 1.2730 0.0126 8 6 7.7980 1.0724 0.0175 9 6 8.4822 2.4151 0.0225 10 1 7.8941 3.3210 0.0219 11 6 9.8591 2.4874 0.0280 12 7 10.5753 1.3843 0.0283 13 14 10.7072 4.1517 0.0335 14 1 9.6845 5.2284 0.0316 15 1 11.5510 4.2732 1.2495 16 1 11.5603 4.2766 -1.1754 17 6 3.5787 -1.2007 -0.0023 18 6 4.3302 -2.5069 -0.0032 19 6 4.6950 -2.8865 1.4333 20 1 5.2463 -2.0682 1.8965 21 6 5.5641 -4.1456 1.4231 22 7 3.4678 -3.1448 2.1982 23 6 2.1971 -1.1979 -0.0009 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8897 -0.5141 27 1 1.6560 2.1327 0.0004 28 1 4.1172 2.1369 -0.0001 29 1 5.9912 1.8323 -0.8769 30 1 5.9856 1.8277 0.9031 31 1 8.0877 0.5134 0.9072 32 1 8.0940 0.5176 -0.8728 33 1 11.5440 1.4350 0.0317 34 1 5.2404 -2.4019 -0.5936 35 1 3.7037 -3.2862 -0.4370 36 1 5.0128 -4.9640 0.9599 37 1 5.8244 -4.4158 2.4465 38 1 6.4748 -3.9539 0.8555 39 1 3.6821 -3.3974 3.1513 40 1 2.8475 -2.3497 2.1659 41 1 1.6556 -2.1324 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071411992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:53 Heat of formation + Delta-G solvation = -46.935758 kcal Electronic energy + Delta-G solvation = -19695.042518 eV Core-core repulsion = 16766.759603 eV Total energy + Delta-G solvation = -2928.282915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06164 -37.45396 -36.36758 -33.46549 -32.17663 -31.23090 -30.08892 -29.16777 -26.72958 -25.98686 -24.87846 -22.44525 -21.16738 -20.45444 -19.74800 -17.70042 -16.16333 -16.12127 -15.73906 -15.24240 -15.15652 -14.84678 -14.52807 -14.09375 -13.66846 -13.61015 -13.07429 -12.71993 -12.36270 -12.31629 -12.25415 -11.83019 -11.77808 -11.54902 -11.39194 -11.17770 -11.08668 -10.91724 -10.79882 -10.67261 -10.31153 -9.83096 -9.67880 -9.30850 -8.76198 -8.51422 -8.47453 -7.65441 -6.12903 -4.17487 1.49768 1.64565 3.24552 3.31808 3.35276 3.84810 3.89485 4.39355 4.62523 4.84133 4.96731 5.06727 5.18724 5.23739 5.31601 5.35470 5.44897 5.59060 5.60635 5.72470 5.81481 5.84990 5.94974 5.99944 6.01467 6.07142 6.09222 6.16565 6.30793 6.40865 6.51254 6.64192 6.70769 6.77324 7.04417 7.23436 7.47986 7.50796 7.61260 7.79407 8.04735 8.21585 8.88240 9.47087 10.98666 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.004670 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.433673 B = 5993.681909 C = 7216.273637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.209 4.209 5 C 0.141 3.859 6 O -0.312 6.312 7 C 0.065 3.935 8 C 0.027 3.973 9 C -0.526 4.526 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.124 4.124 18 C -0.063 4.063 19 C 0.091 3.909 20 H 0.041 0.959 21 C -0.143 4.143 22 N -0.847 5.847 23 C -0.078 4.078 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.335 0.665 40 H 0.340 0.660 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 -6.018 1.748 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C -0.102 4.102 4 C -0.227 4.227 5 C 0.094 3.906 6 O -0.225 6.225 7 C -0.009 4.009 8 C -0.010 4.010 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.527 5.527 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.020 4.020 20 H 0.060 0.940 21 C -0.201 4.201 22 N -0.378 5.378 23 C -0.096 4.096 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.787 -6.826 1.213 18.163 hybrid contribution 0.854 2.106 0.610 2.353 sum -15.934 -4.719 1.823 16.718 Atomic orbital electron populations 1.20650 0.91541 1.02170 1.01696 1.19701 0.95769 0.93059 1.05516 1.20765 0.93330 0.97384 0.98705 1.21340 0.95169 0.97682 1.08550 1.19058 0.83959 0.93249 0.94347 1.86162 1.14673 1.34692 1.86957 1.23314 0.96483 0.81576 0.99526 1.19107 0.85106 0.98041 0.98783 1.21009 0.91495 0.91810 1.52152 0.92370 1.24982 0.97414 0.96849 0.94886 1.69983 1.06018 1.26938 1.49772 0.86443 0.79557 0.83722 0.77747 1.19651 1.20827 1.20800 1.19241 0.93166 0.93235 1.06857 1.20460 1.00206 0.93041 0.96344 1.21253 0.90159 0.96650 0.93897 0.94048 1.21794 0.99323 0.97341 1.01645 1.58891 1.16780 1.44422 1.17724 1.20725 0.92371 0.97483 0.98995 0.91871 0.92125 0.91985 0.86415 0.85325 0.93234 0.93336 0.95497 0.95424 0.92757 0.90017 0.90829 0.92187 0.93061 0.91812 0.85305 0.84671 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.14 -1.73 5.88 -104.60 -0.62 -2.34 16 3 C -0.08 -1.12 9.69 -39.61 -0.38 -1.50 16 4 C -0.21 -3.31 9.04 -39.44 -0.36 -3.66 16 5 C 0.14 2.44 6.66 -39.22 -0.26 2.18 16 6 O -0.31 -6.28 9.28 -19.42 -0.18 -6.46 16 7 C 0.07 1.39 4.68 37.16 0.17 1.56 16 8 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 9 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 10 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 13 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.12 -1.86 4.60 -104.47 -0.48 -2.34 16 18 C -0.06 -0.89 4.74 -27.89 -0.13 -1.02 16 19 C 0.09 1.24 3.42 -67.72 -0.23 1.01 16 20 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.14 -1.76 9.49 37.16 0.35 -1.40 16 22 N -0.85 -9.91 9.24 -4.67 -0.04 -9.95 16 23 C -0.08 -1.00 8.17 -39.60 -0.32 -1.32 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 29 H 0.05 1.02 7.65 -51.93 -0.40 0.62 16 30 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.08 1.28 7.70 -51.93 -0.40 0.88 16 35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.34 3.44 9.04 -39.29 -0.36 3.09 16 40 H 0.34 3.99 7.15 -39.29 -0.28 3.71 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -29.47 337.85 -8.64 -38.11 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.77 Total: 4.81 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -2.46 Total: -22.22 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.69 Total: -35.52 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.18 Total: -6.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.47 -8.64 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071411992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.828 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds